NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102104

Metagenome / Metatranscriptome Family F102104

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102104
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 51 residues
Representative Sequence MKNLILAAFAALSLSAAIAPLANAAVFHNGSTVAGDTAATRWQQTGAI
Number of Associated Samples 61
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 70.11 %
% of genes near scaffold ends (potentially truncated) 22.55 %
% of genes from short scaffolds (< 2000 bps) 80.39 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.549 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.588 % of family members)
Environment Ontology (ENVO) Unclassified
(28.431 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.020 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 50.00%    β-sheet: 5.26%    Coil/Unstructured: 44.74%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF00296Bac_luciferase 2.97
PF13586DDE_Tnp_1_2 1.98
PF13533Biotin_lipoyl_2 1.98
PF02515CoA_transf_3 0.99
PF01425Amidase 0.99
PF13683rve_3 0.99
PF12762DDE_Tnp_IS1595 0.99
PF03740PdxJ 0.99
PF13546DDE_5 0.99
PF01695IstB_IS21 0.99
PF00248Aldo_ket_red 0.99
PF00342PGI 0.99
PF02798GST_N 0.99
PF17202sCache_3_3 0.99
PF03069FmdA_AmdA 0.99
PF00872Transposase_mut 0.99
PF00230MIP 0.99
PF00982Glyco_transf_20 0.99
PF02104SURF1 0.99
PF00873ACR_tran 0.99
PF00496SBP_bac_5 0.99
PF03950tRNA-synt_1c_C 0.99
PF08811DUF1800 0.99
PF00106adh_short 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 2.97
COG0008Glutamyl- or glutaminyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.99
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.99
COG0166Glucose-6-phosphate isomeraseCarbohydrate transport and metabolism [G] 0.99
COG0380Trehalose-6-phosphate synthase, GT20 familyCarbohydrate transport and metabolism [G] 0.99
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 0.99
COG0854Pyridoxine 5'-phosphate synthase PdxJCoenzyme transport and metabolism [H] 0.99
COG1484DNA replication protein DnaCReplication, recombination and repair [L] 0.99
COG1804Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferasesLipid transport and metabolism [I] 0.99
COG2421Acetamidase/formamidaseEnergy production and conversion [C] 0.99
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 0.99
COG3346Cytochrome oxidase assembly protein ShyY1Posttranslational modification, protein turnover, chaperones [O] 0.99
COG5267Uncharacterized conserved protein, DUF1800 familyFunction unknown [S] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.55 %
All OrganismsrootAll Organisms27.45 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001422|Draft_104519All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1656Open in IMG/M
3300001661|JGI12053J15887_10037395All Organisms → cellular organisms → Bacteria2729Open in IMG/M
3300005644|Ga0075036_1688220Not Available507Open in IMG/M
3300006426|Ga0075037_1478271Not Available658Open in IMG/M
3300006893|Ga0073928_10086907Not Available2661Open in IMG/M
3300006893|Ga0073928_10086907Not Available2661Open in IMG/M
3300006893|Ga0073928_10598550Not Available779Open in IMG/M
3300006954|Ga0079219_10724960All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300009500|Ga0116229_10700661All Organisms → cellular organisms → Bacteria → Proteobacteria827Open in IMG/M
3300009500|Ga0116229_10839506Not Available744Open in IMG/M
3300009500|Ga0116229_11000481Not Available672Open in IMG/M
3300009510|Ga0116230_10590646All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300009510|Ga0116230_11123770Not Available570Open in IMG/M
3300009627|Ga0116109_1028578All Organisms → cellular organisms → Bacteria → Proteobacteria988Open in IMG/M
3300009644|Ga0116121_1237449Not Available582Open in IMG/M
3300009650|Ga0105857_1036474All Organisms → cellular organisms → Bacteria → Proteobacteria1293Open in IMG/M
3300009697|Ga0116231_10214330All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1088Open in IMG/M
3300009697|Ga0116231_10226566All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1052Open in IMG/M
3300009697|Ga0116231_10297272Not Available895Open in IMG/M
3300009697|Ga0116231_10565438Not Available622Open in IMG/M
3300009709|Ga0116227_10992094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria632Open in IMG/M
3300009787|Ga0116226_10785245Not Available935Open in IMG/M
3300009787|Ga0116226_10825217Not Available907Open in IMG/M
3300009787|Ga0116226_11464607Not Available635Open in IMG/M
3300009787|Ga0116226_11851435Not Available550Open in IMG/M
3300010341|Ga0074045_10258293All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L211150Open in IMG/M
3300010857|Ga0126354_1023008All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria638Open in IMG/M
3300010864|Ga0126357_1057840Not Available612Open in IMG/M
3300010864|Ga0126357_1059078All Organisms → cellular organisms → Bacteria1019Open in IMG/M
3300010864|Ga0126357_1097713Not Available689Open in IMG/M
3300010864|Ga0126357_1145656Not Available505Open in IMG/M
3300010865|Ga0126346_1031804Not Available509Open in IMG/M
3300010865|Ga0126346_1182128Not Available505Open in IMG/M
3300010867|Ga0126347_1006967Not Available653Open in IMG/M
3300011120|Ga0150983_11768693All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis849Open in IMG/M
3300011120|Ga0150983_15380424Not Available586Open in IMG/M
3300011120|Ga0150983_16097807Not Available666Open in IMG/M
3300012469|Ga0150984_106009773All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300015242|Ga0137412_11072903Not Available572Open in IMG/M
3300016728|Ga0181500_1220964All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales690Open in IMG/M
3300016728|Ga0181500_1228151Not Available687Open in IMG/M
3300018033|Ga0187867_10115924Not Available1553Open in IMG/M
3300018034|Ga0187863_10236664All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1015Open in IMG/M
3300018037|Ga0187883_10338675Not Available769Open in IMG/M
3300018043|Ga0187887_10098721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1761Open in IMG/M
3300019256|Ga0181508_1529538Not Available596Open in IMG/M
3300019256|Ga0181508_1580759Not Available629Open in IMG/M
3300019268|Ga0181514_1487876Not Available594Open in IMG/M
3300021151|Ga0179584_1188642Not Available544Open in IMG/M
3300021168|Ga0210406_11035288Not Available609Open in IMG/M
3300021170|Ga0210400_10064686Not Available2856Open in IMG/M
3300021170|Ga0210400_10232927Not Available1503Open in IMG/M
3300021170|Ga0210400_10455244Not Available1056Open in IMG/M
3300021170|Ga0210400_10458390Not Available1052Open in IMG/M
3300021170|Ga0210400_11184536Not Available616Open in IMG/M
3300021171|Ga0210405_10827522Not Available708Open in IMG/M
3300021171|Ga0210405_10869517Not Available687Open in IMG/M
3300021171|Ga0210405_11260701Not Available545Open in IMG/M
3300021404|Ga0210389_11223645Not Available577Open in IMG/M
3300021405|Ga0210387_11238661Not Available647Open in IMG/M
3300021405|Ga0210387_11387678Not Available605Open in IMG/M
3300021406|Ga0210386_10916899Not Available750Open in IMG/M
3300022527|Ga0242664_1089074Not Available620Open in IMG/M
3300022527|Ga0242664_1123678All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103551Open in IMG/M
3300022530|Ga0242658_1131568Not Available629Open in IMG/M
3300022557|Ga0212123_10107973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2251Open in IMG/M
3300022557|Ga0212123_10555182Not Available734Open in IMG/M
3300022715|Ga0242678_1023860All Organisms → cellular organisms → Bacteria → Proteobacteria764Open in IMG/M
3300022726|Ga0242654_10403720Not Available525Open in IMG/M
3300027698|Ga0209446_1040665Not Available1171Open in IMG/M
3300027817|Ga0209112_10054249All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1230Open in IMG/M
3300027895|Ga0209624_10274213All Organisms → cellular organisms → Bacteria1122Open in IMG/M
3300028742|Ga0302220_10379272Not Available509Open in IMG/M
3300028813|Ga0302157_10105364All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas1760Open in IMG/M
3300028813|Ga0302157_10516979All Organisms → cellular organisms → Bacteria → Proteobacteria623Open in IMG/M
3300029907|Ga0311329_10749771Not Available628Open in IMG/M
3300029954|Ga0311331_11339847All Organisms → cellular organisms → Bacteria → Proteobacteria594Open in IMG/M
3300030503|Ga0311370_11838762Not Available613Open in IMG/M
3300031236|Ga0302324_101511950Not Available871Open in IMG/M
3300031524|Ga0302320_10386227Not Available1777Open in IMG/M
3300031524|Ga0302320_10955289All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae918Open in IMG/M
3300031788|Ga0302319_10487265Not Available1330Open in IMG/M
3300032180|Ga0307471_104217817Not Available508Open in IMG/M
3300034130|Ga0370494_037085All Organisms → cellular organisms → Bacteria → Proteobacteria1244Open in IMG/M
3300034358|Ga0370485_0192792Not Available636Open in IMG/M
3300034358|Ga0370485_0263408Not Available558Open in IMG/M
3300034652|Ga0316598_022515Not Available1614Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.59%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated18.63%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil12.75%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland8.82%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog7.84%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.88%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring4.90%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil3.92%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil2.94%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.94%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.96%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.96%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.98%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.98%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.98%
Hydrocarbon Resource EnvironmentsEnvironmental → Terrestrial → Soil → Sand → Oil-Contaminated → Hydrocarbon Resource Environments0.98%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001422Oil sands microbial communities from Horse River, Alberta, Canada - outcropsEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005644Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_053 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006426Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009510Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009627Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300009650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061EnvironmentalOpen in IMG/M
3300009697Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009787Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010855Boreal forest soil eukaryotic communities from Alaska, USA - W1-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010857Boreal forest soil eukaryotic communities from Alaska, USA - W1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010860Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010864Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010865Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300010867Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300014655Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016728Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300019256Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019268Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021151Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022715Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028742Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034130Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M
3300034358Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_16EnvironmentalOpen in IMG/M
3300034652Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Draft_10451923300001422Hydrocarbon Resource EnvironmentsMKNMILAAFAALTLGVAIAPVANAASFGSSVAGDSQATQMQRTGSYSR*
JGI12053J15887_1003739533300001661Forest SoilMKNMILAAFAALSLTAAIAPVANAAVFHNGSTIAGDAQATRMQQTGAD*
Ga0075036_168822023300005644Permafrost SoilGIPPDQRWRVSMKKMFLTAFTILGLAATAVAPVAANAAAFHNGSTVAGDASATRQQQTGSYDE*
Ga0075037_147827123300006426Permafrost SoilPMKKMFLTALTVLSLAATAVAPVAANAAVFHNGSTIAGDANATRQQQTGSYNQ*
Ga0073928_1008690733300006893Iron-Sulfur Acid SpringMKNMILAAFAALSLSAAVAPVANAAIFHNNSTVAGDSAATQMQQQGGYSE*
Ga0073928_1008690743300006893Iron-Sulfur Acid SpringMKNMILAAFAALSLTAAVAPVANAAIFHNNSTVAGDSAATQMQQQGGYSE*
Ga0073928_1059855023300006893Iron-Sulfur Acid SpringMKYLIRVAFAAISLATIAPVANAATFHNGSTVAGDAAATQMQQQGQL*
Ga0079219_1072496023300006954Agricultural SoilMKKMFLAAFTVLSLAATAVTPVAANAAVFHNGSTVAGDAAATRIQQTGSYSE*
Ga0116229_1041202323300009500Host-AssociatedMKNLILSAFAALALTAVMLPVANAANTHNNSTIAGDRGATLEQQQDGTFGNS*
Ga0116229_1070066113300009500Host-AssociatedMKYLIRAAFFAISLATIAPVANAAVFHNGSTVSGDAAATLMQQTGQL*
Ga0116229_1083950613300009500Host-AssociatedMKNLILAAFTVLNLTAALAPLAQAATFHNGSSVADDQGATTLQQQYDGGR*
Ga0116229_1096241923300009500Host-AssociatedIPPDPKWRVPMKNLILAAFAALSLGTAIVPAAYAATFHNGSTVAGDSAATRQQQIGSLGQ
Ga0116229_1100048123300009500Host-AssociatedMKNLILAAFAALSLTAAVAPLANAATFHNGSTVAGDQTATAIQQQYDAG
Ga0116229_1100414923300009500Host-AssociatedEVPMKYLVRAAFFALTLATIAPVANAAITHSTVAGDAAATRMEQTGSYAGGGNG*
Ga0116230_1059064623300009510Host-AssociatedMKNLILAAFSALSLTAAVAPLANATTFHNGSTVAGDQAATAIQQQYDAGR*
Ga0116230_1112377013300009510Host-AssociatedMKNLILAAFAALSLTAVVAPLANAATFHNGSTVAGDSAATLTQQDNAFTQ*
Ga0116109_102857833300009627PeatlandMFLAAFAALSLAVAIAPAASARDFHNGSTVAGDATTTRMEQTGSFSQ*
Ga0116121_123744913300009644PeatlandMKYLVRAAFFALSLATIAPVANAAVFHNGSTVAGDTAATRMQQTGSYSD*
Ga0105857_103647413300009650Permafrost SoilVAALSLATAVAPVAANAAVFHNGSTVAGDAQATRSQQTGSLS*
Ga0116231_1021433033300009697Host-AssociatedMKNLILAAFTVLSLGAAAAPLAHAATFHNGSTVAGDSSATRLQQNGALGQAGG*
Ga0116231_1022656623300009697Host-AssociatedMKNLILAAFAALTLTAAIAPVAMAAEFHNGSTVAGDSQATLDQQTNSFAR*
Ga0116231_1024712413300009697Host-AssociatedMKNLILAAFAALSLTAVMLPVANAANTHNNSTIAGDRSATLQQQQDGSFGNS*
Ga0116231_1029727213300009697Host-AssociatedMKNLFLAAFAALSLTAAVAPLANAATFHNGSTVAGDSQATLMQQTGSYGGN*
Ga0116231_1056543823300009697Host-AssociatedMKYLVRAAFFTLSLATIAPVANAAVFHNGSTVAGDAQATRMQQTGSYSD*
Ga0116228_1100887223300009701Host-AssociatedMKNLFLAAFAALTMSAVVVPVAHAANTHNNSTIAGDRGATLEQQQDGTFGNS*
Ga0116227_1099209423300009709Host-AssociatedMKNLILAAFAALSLGSVIVPAANAATFHNGSSIAGDSAATQQQRTSSFGQ*
Ga0116226_1078524523300009787Host-AssociatedMKNLILAAFAALSLTAAVAPVAHAATFHNGSTVAGDQEATVIQQQYSTGR*
Ga0116226_1082521723300009787Host-AssociatedMMESSMKNLILAAFAALTLTAAIAPVASARDFHNGSNVAGDAQATLQQQ
Ga0116226_1146460723300009787Host-AssociatedMKYLVRAAFFALSLATIAPVANAAVFHNGSTVAGDAQATRMQQTGQYSE*
Ga0116226_1185143523300009787Host-AssociatedMFPMKTMILAAFAALTLSAAVVPAAMARGFHNGSTVGGDSAATLEQQQNGSYR*
Ga0074045_1025829313300010341Bog Forest SoilMKNLILAAFAALSLTAVVASIANAVVFHSTVADDAAATRMVQTGSFY*
Ga0126355_102039033300010855Boreal Forest SoilDISPDQRWRIPMKNLILAAFAALSLSAAIVPVANAAVFHNGSTVAGDAAATRMQQTGQL*
Ga0126355_111559613300010855Boreal Forest SoilISPDQRWRIPMKNLILAAFATLSLTAAIAPVANAAVFHNGSTVAGDAQATRMQQTGSYGAD*
Ga0126355_118277723300010855Boreal Forest SoilDISPDQRWRIPMKNLILAAFAALSLTAAIAPVANAAVFHNGSTVAGDAVATRMQQTGQL*
Ga0126354_102300813300010857Boreal Forest SoilMKNLILAAFAALSLSAAAAPLANAATFHNGSTVAGDTGATRYQQTGAI*
Ga0126351_132129123300010860Boreal Forest SoilALSKPDISPDQRWRIPMKNLILAAFAALSLSAAIVPVANAAVFHNGSTVAGDAAATRMQQTGQL*
Ga0126357_105784013300010864Boreal Forest SoilDILPGRRWGFPMKTMILTAFAILSLTAAIAPVANATTFHNGSTVRGDLAATRMQQTGSYSQ*
Ga0126357_105907813300010864Boreal Forest SoilDILPGRRWSFAMKTMILAAFAILSLTAAIAPVANAATFHNGSSVRGDLAATRMQQTGSYSQ*
Ga0126357_109771313300010864Boreal Forest SoilMKNLFLAAFAALSLAVAIAPAASAHEFHNGSTVAGDATITRMEQTGSISQ*
Ga0126357_114565613300010864Boreal Forest SoilVSPDSRWRNPMKNVILAAFAALSLTAALAPIASAATFHNGSTVAGDAQATRMEQTGSFAR
Ga0126346_103180413300010865Boreal Forest SoilMKNLFLAAFAALSLAVAIAPAASAHEFHNGSTVAGDATITRMEQTGSISE*
Ga0126346_118212823300010865Boreal Forest SoilMKNLILAAFAALSLSAAVAPLANAAVFHNGSTVAGDAANTRFQQTGAI*
Ga0126346_124405413300010865Boreal Forest SoilLPLKPDIPSGSKWSIPMKNMILAALAALSLTAALAPMANAAVFHNGSTVAGDAEATQRQQTGR*
Ga0126347_100696713300010867Boreal Forest SoilDILPGRRWGFPMKTMILTAFAILSLTAAMAPVANATTFHNGSTVRGDLAATRMQQTGSYSQ*
Ga0150983_1176869333300011120Forest SoilMKNLFLAAFAALSLAVAIAPAASAHVFHNGSTVAGDATITRMEQTGSFSQ*
Ga0150983_1538042413300011120Forest SoilQPLRSALLTILGDLKMKNLVLAAFAVLSLTAAIAPVANAASTIAGDAQATRMQQTGAYGGQ*
Ga0150983_1609780723300011120Forest SoilRIPMKNLILAAFAALSLSAVVAPLANAAEFHNGSTVAGDAAATRWQ*
Ga0150984_10600977313300012469Avena Fatua RhizosphereTSRPTGDGDNPMKNLVLAAFAALSLITAVAPVANAASTIAGDAQATRMQQTGSY*
Ga0181516_1041265923300014655BogGEVPMKYLVRAAFFALTLATIAPVANAAITHSTVAGDAAATRMEQTGSYAGGGNG*
Ga0137412_1107290313300015242Vadose Zone SoilMKNLFLAAFAALSLNAAVVPVANAAVFHNGSTVAGDAAATRMQQAGQSQG*
Ga0181500_122096423300016728PeatlandPPDQGWRIPMKYLIRAAFFAISLATIAPVANAAVFHNGSTVSGDAAATLMQQTGQL
Ga0181500_122815123300016728PeatlandMKYLVRTAFFAISLATVAPVANAAVFHNGSTVSGDATATLMQQTGQL
Ga0187867_1011592423300018033PeatlandMKYLVRAAFFALSLATIAPVANAAVFHNGSTVAGDTAATRMQQTGSYSD
Ga0187863_1023666413300018034PeatlandMKSLMLAAFAALSLSAAVVPAANAALFHNNSTIAGDAEATRSQQTGSYGGE
Ga0187883_1033867513300018037PeatlandAFFALSLATIAPVANAAVFHNGSTVAGDTAATRMQQTGSYSD
Ga0187887_1009872123300018043PeatlandMKKMFLAAFTVLGLAATAVAANAAVFHNGSTVAGDAAATRMQQTGYY
Ga0181508_152953823300019256PeatlandRAAFFALTLATIAPVANAAITHSTVAGDAAATRMEQTGSYAGGGNG
Ga0181508_158075923300019256PeatlandMKYLVRTAFFAISLATVAPVANAAVFHNGSTVSGDAAATLMQQTGQL
Ga0181514_148787623300019268PeatlandMKYLIRAALFAVSLASIPPVANAAAFHNGRAISEDAAATLMQQTGQL
Ga0179584_118864223300021151Vadose Zone SoilPDQRWRIPMKNLILAAFAALSLSAAIVPVANAAVFHNGSTVAGDTQATRMQQTGSYGAD
Ga0210406_1103528813300021168SoilMKTMILAAFAALSLTAAIAPVANAADFHNGSTVAGDKLATQTQQYGAY
Ga0210400_1006468623300021170SoilMKNLILAAIAALSLSAAVAPLANATVFHNGSTVAGNAVATRMQQTGSYSE
Ga0210400_1023292723300021170SoilMKNLFLAAVAALSLSAAVAPLANAAVFHNGSTVSDDAASTRLHQIGAYGGQ
Ga0210400_1045524423300021170SoilMKNLILAAFAALSLSAAIAPLANAAVFHNGSTVAGDTAATRWQQTGAI
Ga0210400_1045839023300021170SoilMKTKTLVLAAVAVMSLTAAIAPIANAAVFHNGSTVAGDAAATRQQQTGSYAR
Ga0210400_1118453623300021170SoilMKNLVLAAVAALSLSGAIAPLANAAVFHNGSTVGGDAAATRMQQTGSYSE
Ga0210405_1082752223300021171SoilMKTKSLVLAAVAAMSLTAAIVPIANAAVFHNGSTVAGDRAATVIQQEGAYAGGGG
Ga0210405_1086951713300021171SoilMRYLVRVAFAVLSLATITPVANAAVFHNGSTIADDGAATLRQQNGGFAGGGN
Ga0210405_1126070123300021171SoilLKQFLLAAFAALSLTAAVAPLAHARDFHNGSTVAGDAAATIIQQQGGFAGGGG
Ga0210389_1122364513300021404SoilMKNLVLAVVAALSLSGAIAPMANAAVFHNGSTVSGDAAATRMQQTGS
Ga0210387_1123866113300021405SoilMKNLFLAAFAALSLAVAIAPAASAHVFHNGSTVAGDATITRMEQTGSFSQ
Ga0210387_1138767813300021405SoilMKNLILAAFAALSLSAAVAPLANAAVFHNGSTVAGDSVATRWQQTGAY
Ga0210386_1091689923300021406SoilMKNLVLAVVAALSLSGAIAPMANAAVFHNGSTVSGDAAATRMQQTGSYSE
Ga0242664_108907433300022527SoilMKNLILAAFAALSLSAVVAPLANAAEFHNGSTVAGDAAATRWQQTGAYN
Ga0242664_112367813300022527SoilMKNLILAAFAALSLSAAVAPLANAATFHNGSTIAGDSTATRMQQTGSYGGE
Ga0242658_105220023300022530SoilTSRPTKRWRVPMNNLILAAFTPLSLTAAFAPVADAAVFRKGSTVAGDAAARRIQPTGWKS
Ga0242658_113156813300022530SoilLAAFAALSLTAAVAPLAHARDFHNGSTVAGDAAATIMQQQGGFAGGGG
Ga0242658_120710613300022530SoilSPDPIERWSIPMKNLILAAFAALRLSAAIAPVANAAVFHNGSTVAGDTAATRWQQTGAI
Ga0212123_1010797333300022557Iron-Sulfur Acid SpringMKYLIRVAFAAISLATIAPVANAATFHNGSTVAGDAAATQMQQQGQL
Ga0212123_1055518223300022557Iron-Sulfur Acid SpringMKNMILAAFAALSLSAAVAPVANAAIFHNNSTVAGDPAATQMQQQGGYSE
Ga0242678_102386023300022715SoilMAAFAALSLTAAVAPLAHAKDFHNGSTVDGDAAATIMQQQGGFAGGGG
Ga0242654_1040372023300022726SoilMKYLVRVAFAVLSLATITPVANAAVFHNGSTVAGDRAATIMQQQGAIEGGGG
Ga0209446_104066523300027698Bog Forest SoilAALSLSAAVVPAANAAVFHNGSSAAGDFTATRMQQQGQL
Ga0209112_1005424923300027817Forest SoilMKKMFLAALTVLSLTAAAVAPIAANAAVFHNGSSVGGDSSATRSEQTGSIDNG
Ga0209624_1027421323300027895Forest SoilLSLSATVAPLASAATFHNGSTVVGDSFATRMQQTGSYGE
Ga0302220_1037927213300028742PalsaMKHLILAAFAALSLTAVVAPMANAAVFHNGSTIAGDAAATRMQQTGSYSR
Ga0302157_1010536413300028813BogMKNLMLAAFAALSLSTAIVPAANAALFHNDSTIAGDAAATRSQQTGSYGGE
Ga0302157_1051697923300028813BogDNPMKNLILTALAALSLTAAIAPVANAAGFHNGSTVAGDATATRMQQTGSL
Ga0311329_1074977123300029907BogMEIPMKYLVRAAFFALSLATIAPVANAAVFHNGSTVAGDAAATRLEQTGSYND
Ga0311331_1133984723300029954BogALAALSMTAAIAPVANAAGFHNGSTVAGDATATRMQQTGSL
Ga0311370_1183876223300030503PalsaMKNLILAAFAALSLSAVVVPVANAAVFHDGSTVAGDAAATRMQQTGAYGGE
Ga0302324_10151195013300031236PalsaMKNLILAAFAALSLSAVVVPVANAAVFHDGSTVAGDAAATRMQQTGSYGGE
Ga0302320_1038622713300031524BogMKNLMLAAFAALSLSTAIVPAANAALFHNSSTIAGDAAATRSQQTGSYGGE
Ga0302320_1095528923300031524BogMKKMFLTAFTVLSLAAAPVAANAAVFHNGSTVGGDAAATRMQQTGSYSD
Ga0302319_1048726523300031788BogMKNLMLAAFGALSLSTAIVPAANAALFHNDSTIAGDAAATRSQQTGSYGGE
Ga0302319_1138057113300031788BogPFVGSSKPDIPPDRRWRIPMKYLVRAAFFALSLATIAPVANAAVFHNGSTIAGDAAATRLEQTGSYND
Ga0307471_10421781713300032180Hardwood Forest SoilLKQFLLAAFAALSLTAAVAPLAHARDFHNGSTVAGDAAATIMQQSGVYYP
Ga0370494_037085_55_2043300034130Untreated Peat SoilMKTLILAAFAALSLSVIAPIASAAAFHNGSTVSGDAAATRMQQTGSYTR
Ga0372943_0006080_700_8943300034268SoilLVIQADITPDLRWRISMKNLMVAAFAALSLTAAVAPMANARDFHNGSTVAGDTIATRTGLAGAY
Ga0370485_0192792_92_2413300034358Untreated Peat SoilMKNLFLAALAALSLAASAPLANARNLHNGSTVSGDAAATRIQQTGGYSQ
Ga0370485_0263408_37_1863300034358Untreated Peat SoilMKTLFLAAFAALSLTVAAPLANAATFHNGSTVAGDAAATRIQQTGGYSQ
Ga0316598_022515_1433_15853300034652Untreated Peat SoilMKTLFLAAFTALSLTVAVVPVASAAGFHNGSTVAGDAAATRMQQTGAYSR


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