3300001399: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012

Overview

Basic Information

• IMG/M Taxon OID: 3300001399
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0056272 | Ga0003464
• Sample Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12281009
• Sequencing Scaffolds: 8
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002759	Metagenome / Metatranscriptome	532	Y
F004387	Metagenome / Metatranscriptome	440	Y
F025088	Metagenome / Metatranscriptome	203	Y
F035555	Metagenome / Metatranscriptome	172	Y
F048671	Metagenome / Metatranscriptome	148	Y
F072806	Metagenome / Metatranscriptome	121	Y
F077984	Metagenome / Metatranscriptome	117	Y
F079370	Metagenome / Metatranscriptome	116	Y
F098278	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI20178J14841_100011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2876
JGI20178J14841_100090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1766
JGI20178J14841_100231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1418
JGI20178J14841_101094	Not Available	664
JGI20178J14841_101146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653
JGI20178J14841_101761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559
JGI20178J14841_102118	All Organisms → cellular organisms → Bacteria → Acidobacteria	528
JGI20178J14841_102468	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20178J14841_100011	JGI20178J14841_1000112	F035555	VHPMSQLAFDLDDVAPXVPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20178J14841_100090	JGI20178J14841_1000901	F035555	VHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20178J14841_100231	JGI20178J14841_1002312	F002759	VTSGWITQADRSRWQQQAAAELAVILAAHPDIPVIAWTVTASGGALSGQVLAPAAGRRGLFGQWRQALELDGATETPSRNGTPVYLHARGVRSGVAVSITATVFDGAEDSR*
JGI20178J14841_100639	JGI20178J14841_1006393	F098278	VAAPGGLQGRELAVLGWTTDDDSGEVALLCRLVDGSAGEIPARWTDLPVRVESQRAVGGVGSPAGWRLLLARGERLAGRRG
JGI20178J14841_101094	JGI20178J14841_1010941	F077984	GIQTKGLDPPPRVVEAGCLQRAWCALTARVKTLTDVLGQLIPKPVSDVVSFWAHLRQSFDSVPKLLCFLSQHHHISLLGNYLCLQPPR*
JGI20178J14841_101146	JGI20178J14841_1011461	F025088	MICPVEIASDLSAFQAARVGEHGRHVGLLEGRGGAGNEDT
JGI20178J14841_101358	JGI20178J14841_1013582	F079370	MAQEVRSPAAYAADIDAAKDRMISFVDGCTDEDWHAAPVDGDPRPVAVIVDHVAHAYEYLAGWIR
JGI20178J14841_101761	JGI20178J14841_1017612	F004387	PTDGGGNGHAQTAKSNGSAAAGSGDDLDARILGLEKAVGTALFRGILREYGRANQPKLIRDAAIKGKVLQMLESATRGLDRLEAVTQRLDPNTVKGLLDKLQVPPLNEIADIKTLQHVVLGLEELAGSNRNSAA*
JGI20178J14841_102118	JGI20178J14841_1021182	F072806	MGRTESLNLKNDYERACGWYGHFNKSEMALFSECTDRYAQKLLDTADIVREAILRQLRESVV
JGI20178J14841_102468	JGI20178J14841_1024682	F048671	MSEILAEAGRITGLGPEISGKITFGLQSAYAEQTGQEPTRFVAPAGQMADLNDEDLVVVQFNRIDNGTVSGPLPVVALSRA*