3300001329: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-5cm)- 6 month illumina

Overview

Basic Information

• IMG/M Taxon OID: 3300001329
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0083722 | Gp0054896 | Ga0011036
• Sample Name: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A28-5cm)- 6 month illumina
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31976169
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → active permafrost layer → permafrost
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Axel Heiberg Island, Nunavut, Canada
• Coordinates
  • Lat. (^o): 79.26
  • Long. (^o): -90.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002094	Metagenome / Metatranscriptome	594	Y
F016071	Metagenome / Metatranscriptome	250	Y
F025332	Metagenome / Metatranscriptome	202	Y
F084617	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
A285W6_1040332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	561
A285W6_1040800	All Organisms → cellular organisms → Bacteria	660
A285W6_1044410	Not Available	556
A285W6_1091297	All Organisms → cellular organisms → Bacteria → Acidobacteria	557

Sequences

Scaffold ID	Protein ID	Family	Sequence
A285W6_1040332	A285W6_10403322	F016071	MPHQIERKFAFGPSALDDLARAFDSAWKELSAQGVEMNSEEQLRCIRTKLAQRIMEYATEGEHGVGHLKEFGLQGLPHL
A285W6_1040800	A285W6_10408002	F084617	VAVIEPGDASKREKDINTRRNTIKHPILAGDLDPDSPRRVPTNVIIMAVAVIVVILYLLGR*
A285W6_1044410	A285W6_10444102	F025332	MIRELAFASKQGMTAETLLWRGVIAVTIQDWLSKPLRPKREAERYLFENSADLSLVCSSAGIDVGQLRERLNKVRGRTLLDLLPVAA*
A285W6_1091297	A285W6_10912971	F002094	PTGDLGTVERSNEEDAVVKWDDDGRMRLRQRSLKKI*