3300001173: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3

Overview

Basic Information

• IMG/M Taxon OID: 3300001173
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055376 | Ga0002993
• Sample Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24986763
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Phaeosphaeriaceae → Parastagonospora → Parastagonospora nodorum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1
Not Available	12
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → solid layer → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005904	Metagenome / Metatranscriptome	386	Y
F007761	Metagenome / Metatranscriptome	345	Y
F010257	Metagenome / Metatranscriptome	306	Y
F010484	Metagenome / Metatranscriptome	303	Y
F011040	Metagenome / Metatranscriptome	296	Y
F013261	Metagenome / Metatranscriptome	272	Y
F019860	Metagenome / Metatranscriptome	227	Y
F025087	Metagenome	203	Y
F027313	Metagenome / Metatranscriptome	195	Y
F029172	Metagenome / Metatranscriptome	189	Y
F034647	Metagenome / Metatranscriptome	174	N
F046500	Metagenome / Metatranscriptome	151	Y
F052222	Metagenome / Metatranscriptome	143	Y
F058359	Metagenome / Metatranscriptome	135	Y
F067955	Metagenome / Metatranscriptome	125	Y
F075135	Metagenome / Metatranscriptome	119	Y
F085409	Metagenome / Metatranscriptome	111	N
F097573	Metagenome / Metatranscriptome	104	Y
F098443	Metagenome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12669J13542_100014	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporales → Pleosporineae → Phaeosphaeriaceae → Parastagonospora → Parastagonospora nodorum	7871
JGI12669J13542_100354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylorubrum → Methylorubrum extorquens	1378
JGI12669J13542_100965	Not Available	927
JGI12669J13542_101356	All Organisms → cellular organisms → Bacteria	805
JGI12669J13542_101455	Not Available	784
JGI12669J13542_102500	Not Available	645
JGI12669J13542_102632	Not Available	634
JGI12669J13542_102686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629
JGI12669J13542_103563	Not Available	573
JGI12669J13542_103787	Not Available	564
JGI12669J13542_103940	Not Available	557
JGI12669J13542_104542	Not Available	531
JGI12669J13542_104563	Not Available	530
JGI12669J13542_104691	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526
JGI12669J13542_104795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523
JGI12669J13542_104814	Not Available	522
JGI12669J13542_105253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509
JGI12669J13542_105303	Not Available	507
JGI12669J13542_105420	Not Available	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12669J13542_100014	JGI12669J13542_1000143	F085409	MRYDVSNFDRPMDQCRNFPVFDTIQQKLEYANQCRASYIKLQLEYGKLNIRHSGFQDSGHVSRADQAVTEMEGLIGLINVE*YQYQDSIVEVAMAFAS*
JGI12669J13542_100354	JGI12669J13542_1003543	F052222	MFAAAVGHRSGRATPSLRGAPQRQSMEIVRRETIYRNRNAVQTNPATSLL
JGI12669J13542_100965	JGI12669J13542_1009652	F013261	TDSHYTTAITQVYGSSYPLTGRLDLQIFPSGNLRGYYHTSYYKLYIPVAGGRDGNYIWFDIGPSSLDLGLGAGPEGKLHIVATMNGDGSFKGQVYPETAAVLSGLSMQYQFATPSPLSENSNDQYIFTATPTTEVEPTPGS*
JGI12669J13542_101356	JGI12669J13542_1013562	F025087	MAVDWGEVTAIATSILAIGLLGGIAAAIFTAQQVREARKSREAHMAAEFFRRWDEDALVQTRRMVRRFKSADELRDAFAAYVAADAPEAYVLLRELDYFEQLAALEAHGAFDLELIRALVGRMLIARWELWKPAITEVYGPGVYPMFAGLVEKLGPSPESPQAQSASRGSPNPAN*
JGI12669J13542_101455	JGI12669J13542_1014552	F046500	MAVRKCPNCGAVIPAGSVAVYSYDLVCASCQHPLAISELSRNFAAFAGLAAGAIAWWIVTLRFAGQLGALGWVWPVFLGYLAASVVAAVTLMFVANLELSDGDPTPQSAVVTSXVHH*
JGI12669J13542_102500	JGI12669J13542_1025002	F067955	MEDHDYRVIEARADLAEARKRDPGELALEELKEEVTRFRKYVRWLIDLADDAADTEYDEEVSQVMIYGGIYIAPADTFKLCDDCTKTLDLI
JGI12669J13542_102632	JGI12669J13542_1026321	F098443	LVLASDEDGSTLDALKFSLASDIIELVVLTSDDAFLQTLREAVGGAR
JGI12669J13542_102686	JGI12669J13542_1026862	F005904	MRPRILLSIFLTALFVLLSGCGNVKNCPVCGTTTADGYAIINAIPVPEHNPNGEPGGPFNSFDI
JGI12669J13542_103563	JGI12669J13542_1035631	F029172	GTYVGRTLFVNGRPVTAARLGAPPRYIQIVPDHHLASKHFEYVFNIYGSYAAIFHYPKSTKMIGEITGDGGQGCTNVLYGYGKKVFWNVGGQTQITEYKVPKTPIKTLSVAYSFPTSCAMNTSGDLAVGIFFESGPGSGDVVIFKNASGSGKVYSTPLAAEYFDGYDNQGNLFADGQTSSGYFALVELRKG
JGI12669J13542_103787	JGI12669J13542_1037871	F010484	FSAYGLTPSQTKWIAQNRKKLFSNVCPAPDPSKVDFVIIFTHDVDFFSATMPEPVHKMNGFSDFTPMTMIDSALMSESDADRAHRQYVWIFQFEKGAFDPASFSPRRKYQYSKVETSSLGSKAGIKAVEDAFQFVATASH*
JGI12669J13542_103940	JGI12669J13542_1039401	F011040	MLVYEDNFGFWDIGNPEERIFFDHVQRQSVLIACERCERPVRLIPPKALCASCVSALEYGAPNSMKEYGCSQKPLLDL
JGI12669J13542_104542	JGI12669J13542_1045422	F058359	MITAWECFHFATLELVRSTPIKQRLICAYRRYLASLPTDEVPTEA
JGI12669J13542_104563	JGI12669J13542_1045631	F010257	MAKIIEFYIPSNFKKKATKWVPAEEQGKVIPFCVPQKK
JGI12669J13542_104691	JGI12669J13542_1046912	F019860	MSGKNFRVAPADERTSVDGKPVRNKVLLAMADNEYELMRADLTYIDLPSHLSLHEPTQN
JGI12669J13542_104795	JGI12669J13542_1047952	F007761	IKKHPELKDEKTARLRIDEKEGAEFIEFLTTQYLSSAILNSGNPETHGWVLFPTRNKWVGPWKEREDFILAVYMKDRVWQFPFSLPPPPGDLMLRKPEN*
JGI12669J13542_104814	JGI12669J13542_1048141	F075135	MRESTDRVQCALYSANPNEQLVASRLLESASAFQTWESEHSGLMLEVANPSFRRTQAALLKKASFRLIHRKALFEYLRDERIRGSVRQRIILSFHPAQDYTRSVIAEHGLYLRKAC
JGI12669J13542_105253	JGI12669J13542_1052532	F097573	VTDSPRDDLESLPEGIEALRALVLRTIADRDATLVERDAAVTERD
JGI12669J13542_105302	JGI12669J13542_1053021	F027313	PYVGLWALAEVVVIGTVSGIYWVGHRRDWQGQWLRARTAAELIWYLPLVAPLIDFSQPEPSANWYMRVFDPGNHLRSGDELEAICAKNESLARTLLDAAWSDPAFITKYAVWTTGILEAQAHYHHRVAIKQHALLHRVHSLNIGLFGLTAFGALLHLALHTVWLSLLT
JGI12669J13542_105303	JGI12669J13542_1053032	F011040	PGLRDTTTVRSKGAQMLVYEDNFGFWDISGPEERVFFDHVQRQSVLIACERCEQPVRLIPPKNLCACCVSALEYGAPISMKEYGSQETLLDPTHSS*
JGI12669J13542_105420	JGI12669J13542_1054201	F034647	GIVAGGIVVMVLFGLALAGLFIRNLRVHNQGNNVEIQTPVGAIKVNKDAPRASGLPVYPGAKSAGDDDNAKIELSNDQGAVGFAVEHFTTSDTLDHVDAWYAHRLGPSFRREQDVSHHPIHGVIVDSDTDLAFVDDHGDGARVVALTRKGDGVDIVLFRAGKKEAQ*