3300001157: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2

Overview

Basic Information

• IMG/M Taxon OID: 3300001157
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055411 | Ga0002908
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25993306
• Sequencing Scaffolds: 25
• Novel Protein Genes: 27
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	1
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	1
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000621	Metagenome	981	Y
F001123	Metagenome / Metatranscriptome	770	Y
F002113	Metagenome	592	Y
F002379	Metagenome / Metatranscriptome	566	Y
F002675	Metagenome	538	Y
F006953	Metagenome / Metatranscriptome	361	Y
F007823	Metagenome / Metatranscriptome	344	Y
F007889	Metagenome / Metatranscriptome	343	Y
F009919	Metagenome	311	Y
F020968	Metagenome / Metatranscriptome	221	Y
F022661	Metagenome	213	Y
F025373	Metagenome	202	Y
F029282	Metagenome / Metatranscriptome	189	Y
F029794	Metagenome	187	N
F036256	Metagenome	170	Y
F037169	Metagenome / Metatranscriptome	168	Y
F040704	Metagenome	161	Y
F042000	Metagenome / Metatranscriptome	159	Y
F048489	Metagenome / Metatranscriptome	148	Y
F048508	Metagenome	148	Y
F050596	Metagenome / Metatranscriptome	145	Y
F051223	Metagenome / Metatranscriptome	144	Y
F054068	Metagenome / Metatranscriptome	140	Y
F070499	Metagenome	123	Y
F082332	Metagenome	113	Y
F089392	Metagenome	109	Y
F097047	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12686J13345_100213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Chloracidobacterium → Chloracidobacterium thermophilum	8771
JGI12686J13345_100502	All Organisms → cellular organisms → Bacteria	5470
JGI12686J13345_100563	All Organisms → cellular organisms → Bacteria	5040
JGI12686J13345_100605	All Organisms → cellular organisms → Bacteria	4748
JGI12686J13345_100843	All Organisms → cellular organisms → Bacteria	3580
JGI12686J13345_101048	All Organisms → cellular organisms → Bacteria → Acidobacteria	2741
JGI12686J13345_101197	All Organisms → cellular organisms → Bacteria	2279
JGI12686J13345_101612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1390
JGI12686J13345_101690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	1296
JGI12686J13345_101714	Not Available	1277
JGI12686J13345_101786	Not Available	1225
JGI12686J13345_101925	All Organisms → cellular organisms → Bacteria → Acidobacteria	1133
JGI12686J13345_102107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046
JGI12686J13345_102731	All Organisms → cellular organisms → Bacteria → Acidobacteria	877
JGI12686J13345_103053	All Organisms → cellular organisms → Bacteria	815
JGI12686J13345_103859	Not Available	715
JGI12686J13345_104092	Not Available	694
JGI12686J13345_104535	All Organisms → cellular organisms → Bacteria	657
JGI12686J13345_104602	Not Available	652
JGI12686J13345_106088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575
JGI12686J13345_106471	Not Available	558
JGI12686J13345_106656	Not Available	550
JGI12686J13345_106748	Not Available	547
JGI12686J13345_107378	Not Available	525
JGI12686J13345_107579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12686J13345_100213	JGI12686J13345_1002131	F002675	VAFSVAIILLLLINPFPSVHSQNQDSAARQTGVLRLRVRVKADDNAPLKGLARKRFFLIRGSLEQNKSVTQIAEQRTLVSRDCYYSKLGASQLFIAWLKANDCESVYCRGIDPQFVTGTNAVPEFANAYAAGQKEFGSDTTALNWLTTNLPENLRDGFYRDRQALIQTLIKQAEVSSGTSVLSVMTDRNGTAYFTDLTPGTYILTNLVPTELPQTTASWSCEVEIKVGDIATEKPYLVSNRKDRNVKCVAVEKPLPVCDK*
JGI12686J13345_100502	JGI12686J13345_1005021	F042000	ILLIDPACFSPGVITGDHILTSYGVITGDGSAFLATNLLFQDLLAEGGYLRDGVITGDGVITGDGVITGDLVATAQSAMILGDTTSVMTTDPDDGIDCLDY*
JGI12686J13345_100563	JGI12686J13345_1005632	F036256	MNDEQFAIAKTIMTRIVMEKIPKAKRWSVSKEFKSWIDGLSKEDFQVYLDRLRLLTQTLSDEGNADQEASRVTGTFIFFGAYPPAEIEQRDQLARIGGEATAYYALALWRSLQVEELQKELRATN*
JGI12686J13345_100605	JGI12686J13345_1006057	F007823	MDQIWGTFVTLIPVFFLLTIVFGAGIYIGRVSKRE*
JGI12686J13345_100843	JGI12686J13345_1008434	F020968	MTGAVTIISRTYRKIKGKYYARVRYKIDDGKPLDILRQVDNKSAIKPKQAEIEVELLKNGPAQLVAGKVTFRQLAQHAKDNIYVSALYDNQETKIKGVRSVVPAHSALNNLVAFFGDVDIRKINEKKLTKYQVARLTGTIKNLRKVSLSTVDRELSKAR
JGI12686J13345_101048	JGI12686J13345_1010485	F022661	TAKGEVVELKYAYAGRAVRFGNESIVIFLTDKPIPSDKVAAEVKEPAMLESEQIRGLEYVIDGDGMWVRFHPSQYQESTSNKLKDYKVEGDVVSGVDEGNDLSSGKYSRSVKFSASIVK*
JGI12686J13345_101197	JGI12686J13345_1011974	F040704	RIFPTKWLASSIDHDRKIAEDLFHFTGCDVNTPMNQLGTDLTSVWRRAFRYRADREATANALRVREGKSIETTSRCSDGGWMFDGKMLRFSREIATPSPDTAMRLVLRVKP*
JGI12686J13345_101612	JGI12686J13345_1016122	F048489	MVTRKAATKVATKVSVLKFNPEWFSDPPPPFFKNLDRVAQRELAAAKKEFTARVKEILAKGQQR*
JGI12686J13345_101690	JGI12686J13345_1016902	F025373	MTQPEPIIAASQAIRFPRLYAAIKWTIITSLILLAVLAAAFWTMVLGGFAASGFRASGPATGAGESLVITPECAWPLSVHEQDAGTVCRMFYNLTPEQRARVLARRK*
JGI12686J13345_101714	JGI12686J13345_1017142	F097047	MPIQESSATALVRFTGLGIVCFNQEHQRGEIAGIRDNKHVLTIKIQRPVYQDGAEKDVIAYKDVVTYENLPNDDVRIEIKASGNPPIAGYEIYQNGEFDRLGAHDVNDFRWLVNMSTLHGDSALQTSPQQRYPLTKIYISNGLFYAHKLDRNLFFEKVEKNANGLSTLSEVFGNVA
JGI12686J13345_101786	JGI12686J13345_1017861	F002113	MEDLLAIEAEAKYLLAASDRSHEQKLMQELLRIFKEAELLFGPRDVSYQLSVPRITECAAARSYIFQPLRKTRIYLSREAGTKPWIASLELAHEAIHVLSPVPFGSGPTILEEGLAEWFAQRYADRVHGLTFERACDPKADDVMRAVSTLLAKNQFVIKTLRTRQPVISKIDEKLLVEVAGIGPSEAKFLCTDFKSYWRTSPLSKFAAQGAERVAACLRSIWDQK*
JGI12686J13345_101925	JGI12686J13345_1019251	F002379	MYFRRLSLALLTLLFAASPLAAQAQKPAPKPADAWAEWETITPEGEEFTVTMPKNPTTESTKFPYHKMELNTRLYLAKSTSGPVLAIASFSGIKANPALYTEFQRFNSYIDAFKDFFPPKVRTKDTAITKLTLVSSRPFNGHTGRSYKVSIGELNGVLHAF
JGI12686J13345_102107	JGI12686J13345_1021072	F007889	THANWGAELVDADEDGYQELLFSGKDSSESRNLRRLILFVPNEKRTYSMQMTGETTSSGTPRIQWLSNATGTEAAAYRTALRQKARLLVSKKR*
JGI12686J13345_102731	JGI12686J13345_1027311	F037169	LILLKIGEELGIPVDIQNERLDPVDANISKLPIEDVARQLSPHIKLYYRADLTRAEKRALRMVLAEPPKATQGP*
JGI12686J13345_102731	JGI12686J13345_1027312	F001123	MQNEIINEENSVKNANGADELKKAFVEPAISVPVDVLEATTFFQVASSGATN*
JGI12686J13345_103053	JGI12686J13345_1030532	F006953	MRDTKRHKRYKTILQIHLCLLCFLCLFVATVEAKGRPEILGVSLGMTREATQQRLKTIGRLEKEERKRQEVWAVNDPRISHILVGYDTDYRVRYITAIARAGGPRIRYQEVVDVKHAQRVNYQGNYKFTLEARRGQVAYVTIAHGRDP
JGI12686J13345_103859	JGI12686J13345_1038591	F089392	MPTTFRAALALIILNLSFSTVASAQSHSLSSTPIRAAEEENLRTLTAEYGRALGAGDLDAMRKFWNPQSPNLTSQLRSYKNVFLQARLELTSPEVTRLEIDGDKAVSQLTLDERRLDRKTGAVLLTFDPFRGACRSFEWTRTSSGWKIEREVLVQDELAARLEATRSDRQRDEILEQEKRFVNNTLIGA
JGI12686J13345_104092	JGI12686J13345_1040921	F070499	PIKRSCRSCSGERKQRRPQACCLRSDQMTKLIKTLFLTCLICFVTIGALGQRSARQQGGSVDGSKLLELGDYYYRSNDISDAADRYYQQAIDSSPGSQTAGYAQYNRGNYWFRKFYVLNEQRSKPDHSALTQAERHYYNFVDKFARQTNTVGLLADAEFYLALVYLQQGNREYAIGWLNHLQAEAAKQDQSIYVYKVVWSSRTGDVVDRNLDTAQLAAYARDAIKKNTDTN
JGI12686J13345_104535	JGI12686J13345_1045351	F054068	LLAIFKMVYMRRAAATMLRVVQFFVGFLPGQTVPRFTMPADPNLTLPYAVAICLGSVVSFFLFRV*
JGI12686J13345_104602	JGI12686J13345_1046021	F000621	MPTTKHELLDWLMDVPEDAEIGTDGAGLALLAILGTNVHLLEVGHIPNADELYAEAINQAMMERLRRIHASGGETDTGVIIVTFQGYISGIPSLFSSDFDTAFVFKNKEQAEAFITEFADELHNPQILDCP*
JGI12686J13345_106088	JGI12686J13345_1060882	F048508	MKFLALIFLSVVSVFQTADVKNFNANSVSFDYPNGWVLNDDSNSDAQQLTLARPNNDVQIRVFVHKGKITTEKFADAKKSFIDPYIASTNKQFVAMGAKPEQSPDSTEIGGAKAEGVKIAANLGEPGAAKIYWALVGQRVVILTIFGPDREIKQFTPAW
JGI12686J13345_106471	JGI12686J13345_1064711	F029794	MPTTKHELLDWLLDVPEDAEIGTDGQGLALLAILGTNVHLLEVGRIPNADELYAEAINQAMMERLRRIDAEGGET
JGI12686J13345_106641	JGI12686J13345_1066411	F029282	SSGCKQCGARAVGEPLPRPAHELPSYGRALALSISGSLIVLVFLVQTIASMVQRGTGWFEFWSWAAAAETAAWRLKWISLPVMFVTLWFGAKLYRSIRQQPAKFCGLTYARSGLIASATVAFLIALLIGVTVPARLRQRELAKEAQIRADWHTFEAAALEYQHRFHTYPADLKDLRDRLPDPY
JGI12686J13345_106656	JGI12686J13345_1066561	F051223	MKMSKISRALGAAMLCLGLLVSASVVIAKQDPAMPAKEKKQKTTMINGTVSAVTDSALTVIDSQKAEHTLAVTAETKVTKGGKDAVLADVKANDVVTIEAQK
JGI12686J13345_106748	JGI12686J13345_1067481	F082332	PATSAEIFKYNIGVRKSLAARARYFAYMLRPTDSDFGSRALPPGFGFAYYLIRPFRLLFKNKQTGLQN*
JGI12686J13345_107378	JGI12686J13345_1073782	F009919	NIQYKLNNWVTFALEEGYYRTRAANNSVFDFGGLPLYRGIPSRTAHNIRSEFATIFNF*
JGI12686J13345_107579	JGI12686J13345_1075791	F050596	RRGLTLTQALIAAGGVTPKAKEARLGRDDGRGFLTVTRIKLKDIESGKVPDPQVRPGDRITIDK*