3300001155: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1

Overview

Basic Information

• IMG/M Taxon OID: 3300001155
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055282 | Ga0002898
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2520391
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	4
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003899	Metagenome / Metatranscriptome	463	Y
F026495	Metagenome / Metatranscriptome	197	Y
F029122	Metagenome / Metatranscriptome	189	N
F037452	Metagenome / Metatranscriptome	168	Y
F041945	Metagenome / Metatranscriptome	159	Y
F059929	Metagenome / Metatranscriptome	133	Y
F060395	Metagenome / Metatranscriptome	133	Y
F065994	Metagenome / Metatranscriptome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12625J13251_10007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2222
JGI12625J13251_10019	All Organisms → cellular organisms → Bacteria	1981
JGI12625J13251_10132	All Organisms → cellular organisms → Bacteria	1202
JGI12625J13251_10135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191
JGI12625J13251_10168	Not Available	1046
JGI12625J13251_10507	All Organisms → cellular organisms → Bacteria	589
JGI12625J13251_10548	Not Available	564
JGI12625J13251_10668	All Organisms → cellular organisms → Bacteria	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12625J13251_10007	JGI12625J13251_100071	F037452	MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPCSGLERSDFVQWP
JGI12625J13251_10019	JGI12625J13251_100191	F026495	VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHRVGARKQGRRHLNA
JGI12625J13251_10132	JGI12625J13251_101321	F003899	MTGFIVSVFPFRNRVSSKEAFEGLELGERKLSRPVLRGPGGRKVARLLGS
JGI12625J13251_10135	JGI12625J13251_101351	F029122	MLIRPAIDDTDPIRYRRPTPDGQFSGNIIDEAMRPTIAW*
JGI12625J13251_10168	JGI12625J13251_101681	F065994	MPVERRGQVTDVGSESTGNRRSSNSRREAAAFVRWHEPDD
JGI12625J13251_10507	JGI12625J13251_105071	F041945	EMFEKIRQLQKENEYLKRQREILKKAMSIVGEEPNPGMR*
JGI12625J13251_10548	JGI12625J13251_105481	F059929	MESSILSEVDDTSILRTGLPRRYACPLLATGLSPLAPRSGLERSDFVL
JGI12625J13251_10668	JGI12625J13251_106681	F060395	PVGVGITIARDPLHGSGRAGFPHPALALGDNAHAAQRIGMTDRRQRQPASEEAMHASPEDVAVLAPPRQRAMPIPTNSESKHRQRRLVHGHSVVAKVSTHNRPQPLALIGDGFMHSSLKLGLHRVQLRLQSFADRLPKNRIHSVAPLLHADVRKTEEVERFRLPFSSP