3300001153: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3

Overview

Basic Information

• IMG/M Taxon OID: 3300001153
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0055409 | Ga0002900
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3923358
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria	5
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006565	Metagenome / Metatranscriptome	370	Y
F014678	Metagenome / Metatranscriptome	261	Y
F017053	Metagenome / Metatranscriptome	243	Y
F018984	Metagenome / Metatranscriptome	232	Y
F025553	Metagenome / Metatranscriptome	201	Y
F026463	Metagenome / Metatranscriptome	197	N
F026495	Metagenome / Metatranscriptome	197	Y
F029122	Metagenome / Metatranscriptome	189	N
F037452	Metagenome / Metatranscriptome	168	Y
F090167	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12684J13248_100010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2674
JGI12684J13248_100035	All Organisms → cellular organisms → Bacteria	1972
JGI12684J13248_100131	Not Available	1425
JGI12684J13248_100190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239
JGI12684J13248_100544	All Organisms → cellular organisms → Bacteria	732
JGI12684J13248_100842	All Organisms → cellular organisms → Bacteria	571
JGI12684J13248_100882	All Organisms → cellular organisms → Bacteria	561
JGI12684J13248_100937	All Organisms → cellular organisms → Bacteria	542
JGI12684J13248_100980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12684J13248_100010	JGI12684J13248_1000101	F037452	MESSFLIEVDNTSILRTGALHCYHYTLNRLPAPRLLLPCSGLERSDFVQW
JGI12684J13248_100035	JGI12684J13248_1000351	F026495	VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLLGASK
JGI12684J13248_100061	JGI12684J13248_1000611	F025553	MKPVSWDKQLGLASPLETAASQSGKIKSPSNKEAGLDVSHHALVSREG
JGI12684J13248_100131	JGI12684J13248_1001311	F026463	MAAEQIQDSKANVKVEKQPNGQVRVVIEGLSIAGNMMDVEEGVLQYLNQAGTAIIKEALQQHDVEGDPLFCGLENGRVKGNSPRPTKHISGKRK*
JGI12684J13248_100190	JGI12684J13248_1001902	F029122	MLIRPAIDDTDPIRYRRPTPDGQFSGNIIDEAMRP
JGI12684J13248_100544	JGI12684J13248_1005441	F006565	VSCGAVHSQAREMLTQGYTATLVAATLAISRSSLYYRKKPRGSRANRQYDEQIVMACGEKLAYGYRRVTWWLQRKKGLPVNRK
JGI12684J13248_100842	JGI12684J13248_1008421	F018984	FQHVSSFAFFEVGFIRWIVRVSFAFYLDVSFDGSAHGVVQPDFIWPSFVIAGFAEEGPIPIPTPVKVFRFDPARAFIRVPSSCPSPQTREDHEINASECAFAHHVPMIVRPTTNLWVELTDQIGGRHAMRSLDGSSDVLQEGFDILLGRLDEQFPVGISAHVLSEEIKAVLHMRNDGLLRREFETSFLQK
JGI12684J13248_100882	JGI12684J13248_1008821	F090167	MLTSINHQSWLFFLPLAQQACLLKDDLLDPVDDLLDDEELMALVRQCLATRYPKSARTGRPGMAPDRLL
JGI12684J13248_100937	JGI12684J13248_1009371	F017053	RIEHHRQRIRRDQRGRKHSEKETVLETSRNFYASNLELGSIPPVFIHQLGRSRWIIDSQVFQTMTTEGHLKKPSVHQGRGQALRVLTWIRVLAFTLTLVFFHRQVRSHFKNCSLGLCDLARRLAYQFLVPRPDSS*
JGI12684J13248_100980	JGI12684J13248_1009801	F014678	MIGSSRIGRQGAGSQIGFDHVGDDDTRLGKIESCDSWIHLVEPLSA