Metagenome / Metatranscriptome Family F090167

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090167
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	62 residues
Representative Sequence	MINSTSHQSWLFYSPLAKQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTG
Number of Associated Samples	101
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.78 %
% of genes near scaffold ends (potentially truncated)	91.67 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.444 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (22.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.57% β-sheet: 0.00% Coil/Unstructured: 49.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF05598	DUF772	3.70
PF13620	CarboxypepD_reg	1.85
PF07730	HisKA_3	0.93
PF02810	SEC-C	0.93
PF02687	FtsX	0.93
PF00069	Pkinase	0.93
PF13683	rve_3	0.93
PF13520	AA_permease_2	0.93
PF02321	OEP	0.93
PF07589	PEP-CTERM	0.93
PF08534	Redoxin	0.93
PF03989	DNA_gyraseA_C	0.93
PF01833	TIG	0.93
PF13414	TPR_11	0.93
PF06029	AlkA_N	0.93
PF01590	GAF	0.93
PF02369	Big_1	0.93
PF02668	TauD	0.93
PF00589	Phage_integrase	0.93
PF00890	FAD_binding_2	0.93
PF00872	Transposase_mut	0.93
PF14559	TPR_19	0.93
PF07228	SpoIIE	0.93
PF13776	DUF4172	0.93
PF16870	OxoGdeHyase_C	0.93
PF11066	DUF2867	0.93
PF03693	ParD_antitoxin	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.70
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.85
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.93
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	0.93
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93
COG3609	Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain	Transcription [K]	0.93
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.67 %
Unclassified	root	N/A	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	57.41 %
Unclassified	root	N/A	5.56 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.41 %
Unclassified	root	N/A	5.56 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.41 %
Unclassified	root	N/A	5.56 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.41 %
Unclassified	root	N/A	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	57.41 %
Unclassified	root	N/A	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001153\|JGI12684J13248_100882	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300002245\|JGIcombinedJ26739_101432988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300002909\|JGI25388J43891_1036808	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300002912\|JGI25386J43895_10174866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300003369\|JGI24140J50213_10089106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300003505\|JGIcombinedJ51221_10112470	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300005174\|Ga0066680_10051926	All Organisms → cellular organisms → Bacteria → Acidobacteria	2410	Open in IMG/M
3300005332\|Ga0066388_101281232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1261	Open in IMG/M
3300005435\|Ga0070714_102181588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005447\|Ga0066689_11039659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300005468\|Ga0070707_102093867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300005555\|Ga0066692_10986227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300005556\|Ga0066707_10149844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1477	Open in IMG/M
3300005586\|Ga0066691_10112175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1541	Open in IMG/M
3300005610\|Ga0070763_10992246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300005921\|Ga0070766_10039390	All Organisms → cellular organisms → Bacteria	2613	Open in IMG/M
3300006031\|Ga0066651_10461848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300006031\|Ga0066651_10503687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300006794\|Ga0066658_10091716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300006797\|Ga0066659_11785641	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300007265\|Ga0099794_10036350	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300009012\|Ga0066710_104512344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300009038\|Ga0099829_10588369	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300009038\|Ga0099829_10596794	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300009088\|Ga0099830_11498157	Not Available	562	Open in IMG/M
3300009444\|Ga0114945_10934244	Not Available	536	Open in IMG/M
3300009621\|Ga0116116_1034169	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300010049\|Ga0123356_12112479	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300010358\|Ga0126370_10135194	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300010359\|Ga0126376_12743331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300010376\|Ga0126381_101110300	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010398\|Ga0126383_10422034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1376	Open in IMG/M
3300011120\|Ga0150983_15786892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300011269\|Ga0137392_11397439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300011270\|Ga0137391_10898250	Not Available	725	Open in IMG/M
3300012096\|Ga0137389_11614426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300012199\|Ga0137383_11155986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300012361\|Ga0137360_11086647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300012582\|Ga0137358_11044997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300012683\|Ga0137398_10957325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300012917\|Ga0137395_10576695	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012929\|Ga0137404_10967154	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300012930\|Ga0137407_12394074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300015356\|Ga0134073_10196911	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300015373\|Ga0132257_102321539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300016294\|Ga0182041_11486021	Not Available	623	Open in IMG/M
3300016371\|Ga0182034_11834265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300017942\|Ga0187808_10216434	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300017995\|Ga0187816_10549081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300018052\|Ga0184638_1019388	All Organisms → cellular organisms → Bacteria → Proteobacteria	2397	Open in IMG/M
3300018082\|Ga0184639_10334514	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300018088\|Ga0187771_11888806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300018090\|Ga0187770_10124848	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300018090\|Ga0187770_10364990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300018431\|Ga0066655_10132267	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1452	Open in IMG/M
3300018431\|Ga0066655_11183936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300018433\|Ga0066667_10546411	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300019786\|Ga0182025_1028166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300020579\|Ga0210407_10283292	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1293	Open in IMG/M
3300020579\|Ga0210407_10399240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1076	Open in IMG/M
3300020580\|Ga0210403_10213330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1584	Open in IMG/M
3300020581\|Ga0210399_11271787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300021168\|Ga0210406_11268074	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300021181\|Ga0210388_11191338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300021374\|Ga0213881_10551786	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021478\|Ga0210402_10570775	All Organisms → cellular organisms → Bacteria → Acidobacteria	1049	Open in IMG/M
3300022563\|Ga0212128_10486515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300023056\|Ga0233357_1055705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300024330\|Ga0137417_1481938	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300026301\|Ga0209238_1093439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1029	Open in IMG/M
3300026309\|Ga0209055_1058239	All Organisms → cellular organisms → Bacteria → Acidobacteria	1642	Open in IMG/M
3300026317\|Ga0209154_1002124	All Organisms → cellular organisms → Bacteria	11239	Open in IMG/M
3300026331\|Ga0209267_1127982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300026331\|Ga0209267_1262164	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300026332\|Ga0209803_1328884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300026335\|Ga0209804_1012704	All Organisms → cellular organisms → Bacteria → Acidobacteria	4529	Open in IMG/M
3300026532\|Ga0209160_1220427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300026997\|Ga0207784_1024716	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300027172\|Ga0208098_1027309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300027648\|Ga0209420_1218569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300027882\|Ga0209590_10752152	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300027889\|Ga0209380_10028388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3155	Open in IMG/M
3300027908\|Ga0209006_10430897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300027911\|Ga0209698_11194321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300027915\|Ga0209069_10250997	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	921	Open in IMG/M
3300028536\|Ga0137415_10294996	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300029999\|Ga0311339_11391076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300030054\|Ga0302182_10378671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300030813\|Ga0265750_1010047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1076	Open in IMG/M
3300031090\|Ga0265760_10274368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300031128\|Ga0170823_10998603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300031573\|Ga0310915_10652106	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031640\|Ga0318555_10608181	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300031708\|Ga0310686_101703703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300031708\|Ga0310686_114826663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300031781\|Ga0318547_10760423	Not Available	603	Open in IMG/M
3300031833\|Ga0310917_10104350	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
3300031879\|Ga0306919_11307269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300031942\|Ga0310916_10953485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300032035\|Ga0310911_10202960	Not Available	1128	Open in IMG/M
3300032064\|Ga0318510_10530925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300032066\|Ga0318514_10635751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300032076\|Ga0306924_12466734	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300032091\|Ga0318577_10460953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300032180\|Ga0307471_100118229	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300032251\|Ga0316198_10702039	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300032261\|Ga0306920_100012141	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11676	Open in IMG/M
3300033289\|Ga0310914_10241616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1621	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.15%
Host-Associated	Host-Associated	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.89%
Aquatic	Environmental → Aquatic	9.26%
Arthropoda	Host-Associated → Arthropoda	0.93%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.11%
Sediment	Environmental → Aquatic → Sediment	3.70%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.85%
Peat	Environmental → Terrestrial → Peat	1.85%
Marine	Environmental → Aquatic → Marine	0.93%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.93%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.44%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.85%
Coastal	Environmental → Aquatic → Marine → Coastal	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.93%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.07%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.15%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	21.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.93%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001153	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022563	OV2_combined assembly	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032251	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12684J13248_1008821	3300001153	Forest Soil	MLTSINHQSWLFFLPLAQQACLLKDDLLDPVDDLLDDEELMALVRQCLATRYPKSARTGRPGMAPDRLL
JGIcombinedJ26739_1014329882	3300002245	Forest Soil	MIASTSHQVWLFYSPLAQQAALLKDDLLDPVDQLLDDPALVEWVRQCLATRS
JGI25388J43891_10368081	3300002909	Grasslands Soil	MYILLDIIEYGMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSP
JGI25386J43895_101748661	3300002912	Grasslands Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIP
JGI24140J50213_100891064	3300003369	Arctic Peat Soil	MIPSTSHQAWLFYSPLAQQAALLKDDLLDPVDQLLEDPALVDLVRQCLTTRYPLSTRT
JGIcombinedJ51221_101124702	3300003505	Forest Soil	MIAPSTHQTWLFYSPLAQQAALLKDDLLDPVDLLLDDPALVDLVRQCLAQRNPRSTQMFS
Ga0066680_100519264	3300005174	Soil	MINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASAR
Ga0066388_1012812321	3300005332	Tropical Forest Soil	MISSTQQQSLLFFLPLAQQLALLKDDLLDTVDSLLDDPELIDLVRQCLAARRPQS
Ga0070714_1021815881	3300005435	Agricultural Soil	MIASSSHQAWLFYSPLARQAALLKDDLLDPVDQLLDDPALLELVQQCLVSRFPASARTGR
Ga0066689_110396591	3300005447	Soil	MYLLLDIIEYVMINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDRVLR
Ga0070707_1020938671	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRSPTRRQSNLFFLPLARQASLLKDDLLDPVDELLDDPALVELVRQCLATRSPHSTTTG
Ga0066692_109862272	3300005555	Soil	MITPSSHQAWLFYSPLAQQAALLKDDLLDPVDQLLDDPALVDLVRQCLAKRSPRSTRTGRRGMA
Ga0066707_101498442	3300005556	Soil	MYILLDIIEYVMISSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTG
Ga0066691_101121751	3300005586	Soil	MINSTSHQSWLFYSPLARQAALLKDDLLDPVDQLLEDPALLELVRQCLATRSPASVRT
Ga0070763_109922462	3300005610	Soil	MIASTSHQDWLFYFPLAQQAALLKDDLLDPVDQLLEDPALLDLVRQCLATRSPLSQRTGRTGIAP
Ga0070766_100393901	3300005921	Soil	MIASTSHQDWLFYFPLAQQAALLKDDLLDPVDQLLEDPALVDLVRQCLATRS
Ga0066651_104618482	3300006031	Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGR
Ga0066651_105036871	3300006031	Soil	MYILLDIIEYGMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGR
Ga0066658_100917164	3300006794	Soil	MQFYAKFRLTFVVLLDIVEYVMIASTQHQSWLFFLPLAQQASLLMDDLLDPVDQLLDDEELIALVRRCLATRGPHSTRT
Ga0066659_117856411	3300006797	Soil	MINSTSHQSWLFYSPLAKQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDRVLRCCVMKHLKG
Ga0099794_100363501	3300007265	Vadose Zone Soil	MIHPTSHQAWLFYSPLALQAALLKDDLLDPVDSLLDDPALLELVRQCLAARFPASVRTGRPGITSDRLLRCCVMKHLEGWSFRDLEGELRSNLVYRR
Ga0066710_1045123442	3300009012	Grasslands Soil	MYLLLDIIEYVMINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPD
Ga0099829_105883691	3300009038	Vadose Zone Soil	STIMIASTSHQDWLFYFPLARQAELLKDDLLDPVDQLLEDPALVDLVRQCLATRSPLSQSRLLGQGKVE*
Ga0099829_105967942	3300009038	Vadose Zone Soil	MIGLTTRQSWLFFQPMAQQVSLLKDDLLDPVDALLADAELVQLVRTCLAGRRP*
Ga0099830_114981571	3300009088	Vadose Zone Soil	MIGLTTRHSWLFFQPMAQQVSLLKDDLLDPVDALLADAELVQLVRTCLAGRRP*
Ga0114945_109342442	3300009444	Thermal Springs	MIGSTTRQSSLFYTPLARQAVLLKDDLLDPVDTLLDDPELVSLVRQRLASRRPLTPRTGRPCIAPDR
Ga0116116_10341692	3300009621	Peatland	MIPSTSHQAWLFYSPLAQQAALLKDDLLDPVDQLLEDPALVDLVRRCLAARHPLSTRTG*
Ga0123356_121124791	3300010049	Termite Gut	MISSTQHQSLLFYLPLAQQVALLKDDLLDAVDPLLDDPELIDLVRQCLAKRCPQSTRT
Ga0126370_101351941	3300010358	Tropical Forest Soil	MINSTSHQAWLFYSPLALQAALLKDDLLDPVDELLDDPALLELVQQCLAVRFPAS
Ga0126376_127433311	3300010359	Tropical Forest Soil	MVASTYHQSFIFYLPLAEQASLLKDDLLDPVDQLLDDPELVEMVRQCLATRCPKSTRTGRTGI
Ga0126381_1011103001	3300010376	Tropical Forest Soil	MLSPINHQSWLFFLPLAQQAALLKDDLLDPVDDLLDDEELIALVRQCLATRYPQSARTG
Ga0126383_104220341	3300010398	Tropical Forest Soil	MIASTQHQSWLFFLPLAQQAALLKDDLLDAVDPLLHDPELIELVRQCLAARRPQSTRTGRPGIA
Ga0150983_157868921	3300011120	Forest Soil	MIASSSYQAGLFYSPLAQQAALLKDDLLDPVDLLLDDPALVDLVRQCLAKRSPRSTRTGRRGMAQQHKR*
Ga0137392_113974391	3300011269	Vadose Zone Soil	MIASTSHQAWLFYSPLAQQAALLKDDLLDPVDQLLNDPALVELVRQCLATRSPLSQRTGRDGIAPD
Ga0137391_108982501	3300011270	Vadose Zone Soil	LIGLTTRHSWLFFQPMAQQVSLLKDDLLDPVDALLADAELVQLVRTCLAGRRP*
Ga0137389_116144262	3300012096	Vadose Zone Soil	MIGTTTHQSWLFYLPLAQQASLLKDDLLDPVDTLLADPDLVGLVRTCLAGRRPAS
Ga0137383_111559862	3300012199	Vadose Zone Soil	MINSTSHQSWLFYSPLAKQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTG
Ga0137360_110866471	3300012361	Vadose Zone Soil	MINSTSHQPWLFYSPLANQVALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIT
Ga0137358_110449971	3300012582	Vadose Zone Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDR
Ga0137398_109573252	3300012683	Vadose Zone Soil	MIAPSSHQAWLFYSPLAQQAALLKDDLLDPVDLLLDDPALVDLVRQCLAKRSPRS
Ga0137395_105766952	3300012917	Vadose Zone Soil	MIASTSHQAWLFYSPLARQAALLKDDLLDPVDPLLGDPALLDLVRQCLAKRSPRSTRTGRTG
Ga0137404_109671542	3300012929	Vadose Zone Soil	MIASSSHQAWLFYSPLARQAALLKDDLLDPLDPLLDDPTLVDLVRQCLATRSPLSQRTG
Ga0137407_123940741	3300012930	Vadose Zone Soil	MIASRSHQAWLFYSPLARQAALLKDDLLDPVDHLLNDPALVDLVRQCLATRSPLSQRTGRTGM
Ga0134073_101969111	3300015356	Grasslands Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASA
Ga0132257_1023215391	3300015373	Arabidopsis Rhizosphere	MIGTTAHQSWLFYLPLAQQVSLLKDDLLDPVDQLLNDSALIDLVRQCLAA
Ga0182041_114860211	3300016294	Soil	MIASTHHQAWIFFLPLAQQASLLKDDLLDPVDPLLDDPELVERVRHCLATRCPKSTRTGR
Ga0182034_118342652	3300016371	Soil	MTSSTHHQAWLFYFPLALQASLLKDDLLDPVDQLLDDEELIQLVRHSLATRCPK
Ga0187808_102164341	3300017942	Freshwater Sediment	MYILLDIIEYVVINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGITPDRVLRCCVMKHLKG
Ga0187816_105490812	3300017995	Freshwater Sediment	MLASRIASTQQQAWLFYVPLAKQAALLKDDLLDPVDQLLEDPHLIELVRDCLASRSAASTRTGR
Ga0184638_10193881	3300018052	Groundwater Sediment	MIGTTTHQSWLFYLPLAQQASLLKDDLLDPVDTLLADPELVGLVRKCLAGRH
Ga0184639_103345142	3300018082	Groundwater Sediment	MVGPTTRQSNLFYVPLARQAVLLKDDLLDPVDALLDDAELVGLVRERLA
Ga0187771_118888062	3300018088	Tropical Peatland	MTGTISRQSWLFYLPLARQASLLKDDLLDPVDQLLDDPALVELVRQSLARRHPRSTR
Ga0187770_101248483	3300018090	Tropical Peatland	MITSTSHQAWLFYSPLALQASLLKDDLLDPVDRLLDDPALLDLVHQCLATRSHASA
Ga0187770_103649902	3300018090	Tropical Peatland	MTGATSRQSCLFYLPLARQAALLKDDLLDPVDQLLDDPALVELVRQSLARRCPRSTRTGRPSIA
Ga0066655_101322671	3300018431	Grasslands Soil	MYILLDIIEYGMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDRVLRC
Ga0066655_111839361	3300018431	Grasslands Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDRVLRC
Ga0066667_105464112	3300018433	Grasslands Soil	MYILLDIIEYVMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPP
Ga0182025_10281661	3300019786	Permafrost	MIASTSHQDWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLAIRSPLSKRTGRTGRFPS
Ga0210407_102832921	3300020579	Soil	MIASSSHQAWLFYSPLAQQAALLKDDLLDPVDLLLDDPALVDLVRQCLAKRSPRS
Ga0210407_103992402	3300020579	Soil	MIASSSYQAGLFYSPLAQQAALLKDDLLDPVDLLLDDPALVDLVRQCLAKRSPRSTRTGRRGMAQQHKR
Ga0210403_102133301	3300020580	Soil	MIASTSHQAWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLATRS
Ga0210399_112717871	3300020581	Soil	MIASTSHQAWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLAARSP
Ga0210406_112680741	3300021168	Soil	MITSTSHQAWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLAARSPLSERTG
Ga0210388_111913382	3300021181	Soil	MIASTSHQAWLFYFPLAQQAALLKDDLLDPVDQLLEDPALVDLVRQCLATRSPLSQRTGRTGI
Ga0213881_105517861	3300021374	Exposed Rock	MLASINHQSSLFFLPLAQQAALLKDDLLDPVDDLLDDEELIALVRQCLATR
Ga0210402_105707751	3300021478	Soil	VYILLDIIEYAVINSTSHQPWLFYSPLALQAALLKDDLLDPVDELLDDPALLDLVQQCLAARSPASAR
Ga0212128_104865151	3300022563	Thermal Springs	MIGTTTHQSWLFYLPLAQQAALLKDDLLDPVDTLLADPDLVGLVRTCLAGRHPA
Ga0233357_10557051	3300023056	Soil	MTATTQHQSRLFYSPWAQQAALLRDDLLDPVDRLLEDPDLVELVRRCLARHPASTRTGRIRT
Ga0137417_14819382	3300024330	Vadose Zone Soil	MIHPTSHQAWLFYSPLALQAALLKDDLLDPVDSLLDDPALLELVRQCLAARFPASVRTGRPGITSD
Ga0209238_10934392	3300026301	Grasslands Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARS
Ga0209055_10582392	3300026309	Soil	MYILLDIIEYVMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPD
Ga0209154_10021241	3300026317	Soil	MINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPD
Ga0209267_11279821	3300026331	Soil	MYILLDIIEYGMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPGIPPDR
Ga0209267_12621641	3300026331	Soil	MYILLDIIEYVMINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPASARTGRPG
Ga0209803_13288841	3300026332	Soil	MIHSTSHQAWLFYSPLALQAALLKDDLLDPVDQLLDDPALLDLVQQCLAARFPASARTGRPG
Ga0209804_10127041	3300026335	Soil	MINSTSHQSWLFYSPLALQAALLKDDLLDPVDQLLEDPALLDLVRQCLATRS
Ga0209160_12204272	3300026532	Soil	MITPSSHQAWLFYSPLAQQAALLKDDLLDPVDQLLDDPALVDLVRQCLAKRSPRSTRTGRRGMAP
Ga0207784_10247161	3300026997	Tropical Forest Soil	MLTSINHQSWLFFLPLAQQAALLKDDLLDPVDDLLDDEELIALVRQCLATRYPQSARTGRPGMAPDR
Ga0208098_10273091	3300027172	Forest Soil	MISPSSHQAWLFYSPLAQQVALLKDDLLDPVDLLLDDPALVDLVRQCLARRSP
Ga0209420_12185691	3300027648	Forest Soil	MIASTSHQAWLFYFPLVQQAALLKDDLLDPVDRLLDDPALMDLVRQSLATR
Ga0209590_107521522	3300027882	Vadose Zone Soil	MIGPTTRQSSLFYVPLARQAVLLKDDLLDPVDSLLDDPELVWLVRQRLASRRPLSPHTGR
Ga0209380_100283881	3300027889	Soil	MIAPSSHPAWLFYFPLAQQAELLKDDLLDPVDQLLEDPALLDLVRQCLATRSPLSQ
Ga0209006_104308972	3300027908	Forest Soil	MIASSSHQAWLFYSPLAQQAALLKDDLLDPVDQLLDDPALVDLVRQCLAKRSPRSTRT
Ga0209698_111943211	3300027911	Watersheds	MIASSSHQDWLFYSPLAHQAALLKDDLLDPVDQLLDDPALVDLVRQYLAKRSPRSTRTGR
Ga0209069_102509971	3300027915	Watersheds	MIAPSSHQAWLFYSPLARQAALLKDDLLDPVDQLLDDPALVELVRLCLARRSPRSNRQRFSGGGCQESEAAQSMP
Ga0137415_102949962	3300028536	Vadose Zone Soil	MINSTSHQSWLFYSPLAKQAVLLKDDLLDPVDQLLEDPALVDLVQQCLAARSPAS
Ga0311339_113910761	3300029999	Palsa	MIASSSHQAWLFYSPLAQQAALLKDDLLDPVDHLLDDPALVDLVRQCLAKRSPRSS
Ga0302182_103786711	3300030054	Palsa	MIASTSHQDWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLATRSPLSQRTGRTGIAP
Ga0265750_10100471	3300030813	Soil	MIASTSHQDWLFYFPLAQQAELLKDDLLDPVDQLLEDPALVDLVRQCLATRSPLSQRTGRTGI
Ga0265760_102743682	3300031090	Soil	MIDSTSHQDWLFYFPLAQQAALLKDDLLDPVDQLLDDPALVDLVRQCLATR
Ga0170823_109986031	3300031128	Forest Soil	MYILLDIIEYVVINSTSHQPWLFYSPLALQAALLKDDLLDPVDELLDDPALLELVQQCLAARSPASARTGRP
Ga0310915_106521062	3300031573	Soil	MLTSINHQSWLFFLPLAQQASLLKDDLLDPVDDLLDDEELMALVRHCLATRYPQSARTGRPG
Ga0318555_106081811	3300031640	Soil	MIETTSRQSWLGYLPLARQAVLLKDDLLDPVDKLLDDPALVELVRQSLARRYPRSTLTGRPG
Ga0310686_1017037031	3300031708	Soil	MISPSSHQAWLFYSPLAQQAARLKDDLLDPVDRLLDDPALVDLVRQCLTKRSPRSTRTGR
Ga0310686_1148266631	3300031708	Soil	MIASTSPQAWLFYFPLAQQAALLKDDLLDPVDQLLEDPALLDLVRQCLATRSPLSQRTGRTGIAP
Ga0318547_107604231	3300031781	Soil	MIAPSSHQAWLFYSPLAHQVALLKDDLLDPVDQLLDDPHLVDLVRQCLAKRSPRSARTGRRGIAPD
Ga0310917_101043501	3300031833	Soil	MIGVTSRQSWLFYLPLARQASLLKDDLLDPVDRLLDDPSLVELVRQSLAGRRPH
Ga0306919_113072691	3300031879	Soil	MIASTQHQSWLFFLPLAQQSALLKDDLLDPVDQLLEDDALVDLVRQCLAARHPQSTRTGRPSIAPDRPAA
Ga0310916_109534852	3300031942	Soil	VTISYILSSINHQSWLFFLPLAQQAALLKDDLLNPVDDLLDDEELIALVRQCLATRYPKSARTGRPG
Ga0310911_102029601	3300032035	Soil	MIGATSRQSWLFYLPLARQASLLKDDLLDPVDKLLEDSALVELVRQSLAGRR
Ga0318510_105309251	3300032064	Soil	MIGATSRQSWLFYLPLARQASLLKDDLLDPVDKLLEDSALVELVRQSLAGRRPRSTR
Ga0318514_106357511	3300032066	Soil	MIGTTTHQSWLFYLPLAQQAALLKDDLLDPVDTLLADPELVGLVRTCLAGRCPKS
Ga0306924_124667341	3300032076	Soil	MLTSINHQSWLFFLPLAQQASLLKDDLLDPVDDRLDDEELMALVRHCLATRYPQSART
Ga0318577_104609532	3300032091	Soil	MIETTSRQSWLGYLPLARQAALLKDDLLDPVDKLLDDPALVELVRQSLARRYPRSTLTGRPGMASD
Ga0307471_1001182294	3300032180	Hardwood Forest Soil	MYILLDIIEYVVINSTSHQPWLFYSPLALQAALLKDDLLDPVDQLLEDPALLDLVQQCLAARSPASART
Ga0316198_107020391	3300032251	Sediment	MIGATTRQSCLFFVPLARQAVLLKDDLLDPVDALLDDRELVSLVRNR
Ga0306920_1000121411	3300032261	Soil	MIASTQHQSWLFFLPLAQQSALLKDDLLDPVDQLLEDDALVDLVRQCLAARHPQSTRTGRPSI
Ga0310914_102416162	3300033289	Soil	MIASTQHQSWLFFLPLAQQSALLKDDLLDPVDQLLEDDALVDLVRQCLAARHPQSTRTGRPSIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090167

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences