3300001152: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1

Overview

Basic Information

• IMG/M Taxon OID: 3300001152
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0071004 | Gp0054855 | Ga0002919
• Sample Name: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 11889675
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium cookii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium paraterrae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → land → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Davy Crockett National Forest, Groveton, Texas, USA
• Coordinates
  • Lat. (^o): 31.11
  • Long. (^o): -95.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018720	Metagenome / Metatranscriptome	233	Y
F036968	Metagenome / Metatranscriptome	169	Y
F044041	Metagenome / Metatranscriptome	155	Y
F046067	Metagenome / Metatranscriptome	152	Y
F050386	Metagenome / Metatranscriptome	145	Y
F064932	Metagenome / Metatranscriptome	128	Y
F066257	Metagenome / Metatranscriptome	127	Y
F078155	Metagenome / Metatranscriptome	116	Y
F087928	Metagenome / Metatranscriptome	110	Y
F098663	Metagenome / Metatranscriptome	103	Y
F098798	Metagenome / Metatranscriptome	103	Y
F104021	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12699J13341_100300	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1706
JGI12699J13341_100410	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1531
JGI12699J13341_101022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1062
JGI12699J13341_101056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium cookii	1046
JGI12699J13341_101485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	901
JGI12699J13341_101629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	866
JGI12699J13341_101987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	777
JGI12699J13341_102520	Not Available	692
JGI12699J13341_103302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium paraterrae	601
JGI12699J13341_104273	Not Available	530
JGI12699J13341_104579	Not Available	511
JGI12699J13341_104720	Not Available	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12699J13341_100300	JGI12699J13341_1003003	F098663	MFLLQVLHGCRQSVL*EVRLTPLTDEIPVVNLYLTINVTDRVSFGAKTSRYGPHELGYKRATKTFTK*CKTVPLNLIWLFA*
JGI12699J13341_100410	JGI12699J13341_1004101	F050386	LRGSRKSYQWKRISEVHKLMVDIQTAHAKLGSQDGNSREHEIKVPNDY*
JGI12699J13341_101022	JGI12699J13341_1010222	F104021	LILRWVKDENDEQYRAYSGNRTYTARLFEVGAYDGDPTLTMYDDSYRSTCWSLTIRVGVTTLNPVRLFNTRSSALFAAQQSEDNATEHQRPDSDVDDFSGRHGRGVHDENTVTITGRDGKTYTYWTRGRADLIGD*
JGI12699J13341_101056	JGI12699J13341_1010562	F087928	VTSTSHLAELEVTSTDVVAAWDALEPVVAQCAGLLGIPATKSDYYVGHSDDQATVAGADLRDCLDRVETPASISVTYTANSDSGPDPQSIELRIMRYRRFKELNVNLRVSGPMDVHTLGLFERTKSTLAQAIDRLNEP*
JGI12699J13341_101485	JGI12699J13341_1014852	F098798	MNNNIYNYFKIEDLSERYKKLTPAFYIKQRKNRKNIKGSKKYKKFLVGDIIEFLFVFKSVPLLYSGICIAIKRKSFLVPDVTLIIRNVIMKVAIEVTVSFFYNRLYKLKFLDYKRKFYFFNKNKIFFLRKRLNRESKIGD*
JGI12699J13341_101629	JGI12699J13341_1016292	F078155	FIPEWKWFSPTAGIGAAYQYLQDKVPPAPLQKDNEMAYVSLGARGFITRRFLWRVDWRHYVVFNKLNVYEDLEEWKFGLAVFF*
JGI12699J13341_101987	JGI12699J13341_1019872	F036968	VTTRNLPVRSIGCSAPIFAGAEGKRLEPAVRDFRQHDMNVTIRLNLLGWQLATFKVDLDMGRSGDDAPRPRPLDGACKRLSRLWVNAMMS*
JGI12699J13341_102520	JGI12699J13341_1025201	F044041	MELVELRSLCDQLREVIAAGPGRNDLALREAIGIVSILQQAAPWNGPRDKLVTIRGWLAIWFSQRQWRLYGDEGEICKQSLINDILVAESYWERELVHH*
JGI12699J13341_103302	JGI12699J13341_1033021	F066257	STLLGVCSQLSQSRHRGLAGWAASVSDALLVRLVTVTTGVHVGGTTTEPGQPLAKLDAAELEGLYSLLLAGAEASDNEAVVRWCTRMSRLIVAEVYRREYIQVAIDAKAAAIEAEERRLVCQARPVLVLRTVMPASAV*
JGI12699J13341_104273	JGI12699J13341_1042732	F018720	MSASSSRMGVAAFIAVLTVSAGTMLYLFWHFPLITAVVTVGVLAALGVLARLARSID
JGI12699J13341_104579	JGI12699J13341_1045791	F064932	MQSKVIALLAAEGSREATLLVRRGNGQFALARIDARVATAARLADRYARSASAALETSLKK*
JGI12699J13341_104720	JGI12699J13341_1047202	F046067	MPIHDHMPTRRGGAFLWGGIGLGILLLALLLTHGFGLLSSGKTRAGPDLMTRQG