3300001096: Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Sludge

Overview

Basic Information

• IMG/M Taxon OID: 3300001096
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056652 | Gp0054536 | Ga0026856
• Sample Name: Wastewater bioreactor microbial communities from Singapore -Terephthalate degrading community TA Sludge
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 287381823
• Sequencing Scaffolds: 30
• Novel Protein Genes: 34
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5
All Organisms → cellular organisms → Archaea → Euryarchaeota	5
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinales incertae sedis → ANME-2 cluster → Candidatus Syntrophoarchaeum → Candidatus Syntrophoarchaeum butanivorans	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	4
Not Available	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Terephthalate → Wastewater → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Singapore And Univ Of Illinois At Urbana, That Are Terephthalate-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: National University of Singapore, Singapore
• Coordinates
  • Lat. (^o): 1.29973
  • Long. (^o): 103.771791
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001057	Metagenome / Metatranscriptome	791	Y
F018395	Metagenome / Metatranscriptome	235	Y
F028541	Metagenome / Metatranscriptome	191	Y
F029922	Metagenome / Metatranscriptome	187	Y
F032706	Metagenome / Metatranscriptome	179	Y
F035532	Metagenome / Metatranscriptome	172	N
F038290	Metagenome / Metatranscriptome	166	Y
F039694	Metagenome / Metatranscriptome	163	Y
F042959	Metagenome / Metatranscriptome	157	N
F043670	Metagenome	156	N
F045834	Metagenome / Metatranscriptome	152	Y
F052017	Metagenome / Metatranscriptome	143	N
F053881	Metagenome / Metatranscriptome	140	N
F054063	Metagenome / Metatranscriptome	140	N
F055836	Metagenome / Metatranscriptome	138	Y
F057477	Metagenome / Metatranscriptome	136	Y
F067453	Metagenome	125	Y
F067893	Metagenome / Metatranscriptome	125	Y
F069722	Metagenome / Metatranscriptome	123	Y
F070633	Metagenome / Metatranscriptome	123	N
F075047	Metagenome / Metatranscriptome	119	Y
F098758	Metagenome / Metatranscriptome	103	N
F101439	Metagenome	102	Y
F103516	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI11944J13513_1000052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	120150
JGI11944J13513_1000324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	49602
JGI11944J13513_1000465	All Organisms → cellular organisms → Archaea → Euryarchaeota	39598
JGI11944J13513_1000468	All Organisms → cellular organisms → Archaea → Euryarchaeota	39272
JGI11944J13513_1000782	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	28704
JGI11944J13513_1001051	All Organisms → cellular organisms → Archaea → Euryarchaeota	23424
JGI11944J13513_1001095	All Organisms → cellular organisms → Bacteria → Proteobacteria	22907
JGI11944J13513_1001251	All Organisms → cellular organisms → Bacteria	20988
JGI11944J13513_1001978	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15277
JGI11944J13513_1002390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	13169
JGI11944J13513_1002428	All Organisms → cellular organisms → Archaea → Euryarchaeota	13030
JGI11944J13513_1002446	All Organisms → cellular organisms → Bacteria	12972
JGI11944J13513_1002688	All Organisms → cellular organisms → Bacteria	12055
JGI11944J13513_1003370	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus aciditrophicus	10075
JGI11944J13513_1004640	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa	7825
JGI11944J13513_1006238	All Organisms → cellular organisms → Bacteria → Proteobacteria	6150
JGI11944J13513_1007134	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinales incertae sedis → ANME-2 cluster → Candidatus Syntrophoarchaeum → Candidatus Syntrophoarchaeum butanivorans	5510
JGI11944J13513_1007736	All Organisms → cellular organisms → Archaea → Euryarchaeota	5141
JGI11944J13513_1007901	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	5044
JGI11944J13513_1009784	All Organisms → cellular organisms → Bacteria	4204
JGI11944J13513_1009874	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	4174
JGI11944J13513_1016370	All Organisms → cellular organisms → Bacteria	2640
JGI11944J13513_1016431	Not Available	2630
JGI11944J13513_1024061	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	1829
JGI11944J13513_1047670	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	879
JGI11944J13513_1054006	All Organisms → cellular organisms → Bacteria	780
JGI11944J13513_1061285	Not Available	698
JGI11944J13513_1064712	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	666
JGI11944J13513_1071782	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Candidatus Methanofastidiosa → unclassified Candidatus Methanofastidiosa → Candidatus Methanofastidiosa archaeon	610
JGI11944J13513_1080027	Not Available	560

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI11944J13513_1000052	JGI11944J13513_1000052116	F018395	MRCLMSAGQKSDRTDTAYAAKAHELSLKNRNWLRHGKGTTAGKIDEMLLDGATIEQMAKRAKTTKAAVSVHLTHLRKEHKLAIVKKDGVYRYDVKQAK*
JGI11944J13513_1000324	JGI11944J13513_100032431	F028541	MDERERLKLINRLKTAKTSEERDKILWYLAGQDKEAQGRARRAEPTRTPARDEAEEKPRVSLPVGKLGGVGSFTALLFLFYGLVTIVTAVMKILEGKIEGDEIKQLIMGGLFLLFGVVIYLRARRAQQKAAEET*
JGI11944J13513_1000465	JGI11944J13513_10004655	F029922	LAKSIDVLDKRMISGLPTLSREELYNFNIIELSEMIMAIEHAIRYTEGYRFLLLCFGNEGSSDKAKMIMKGMEDYLELVKDVYRFKVNEKKKRTAFLKGEIY*
JGI11944J13513_1000468	JGI11944J13513_100046828	F098758	MDYKRLCLFFTMVLIGFVILFSGCNTKKNEPPPVIPKDLCENVTCPDVCHGEDLWSQKCSDGLCIDFVRIEPCSEKCGCVVDLCAKVKCIDKCRGEDLWSYKCVNGVCVPDFLKESCSVECGCAPKFFYKLVPEARYRLPEVGIIANVYSIRSDQVIRAVVTCRSSFCSDPPTVYYTKFEDPFERSENETVVYYGSAWKNFEEMKGNELKVKESATYMIGVSSQYYIEVGFLDDK*
JGI11944J13513_1000782	JGI11944J13513_10007826	F032706	MKAPNRTATICQWAADPTQTCLGSTRGRVAEVVTADVTPARVFVPSGGVAARVRSIPERLIRYEKRGSVGVVTARVANIGEIYEELDALLDRIAADEEIQIVAVYTRNGLFASLPIR*
JGI11944J13513_1001051	JGI11944J13513_100105110	F054063	MDINVKLKYTSTIMNAWLYGVENTANIFFDKPKLFYRRWGTIAIKPFIESWNDLGMNFQKGLSPYNTAKMFIDALVKAEFINSADFEMAGDDNNFTFKAIQCPYKSHCSKLIAEGKEIACLRAITLLGAMEYNKEGESLKYMYKFDFNKDAPCLVSFEKFKD*
JGI11944J13513_1001095	JGI11944J13513_100109514	F052017	MQRGVLTRDDVERFEGELGRLIVVKKALELALVSPAIKDDQKQSYSRALLQCERTLREFRRALIAMKVGLSRWAPHRRIGKAA*
JGI11944J13513_1001095	JGI11944J13513_10010954	F038290	MNTTVIDHEGRARDLGKIPVRTASHRVSPLRRFRNLVELSDWDEAILRHGREIDAFCWMLAVGTAFLLVPVSLLVMKG*
JGI11944J13513_1001251	JGI11944J13513_100125120	F075047	MKKHLVLLMACLAATWGCASVVYVSQETGKGQLMSATDEVPLQPSALFVTAHDDSMPDVSRDGRWVAFRRVIGGTDRVFVRRVGDASGATERNLAEGTRPRWSPSGSWVLFRNQGKLYQVRPDGSSLMQLTTPPANMTDNFGHDYWNATTVVFGRGTGTGPGQVAALHLVDIASLAVTGPVLGCSQPVVSHDGGRMTCEIKYYYGWGTMHYVQVFAIPSLQSAGSIGFLYGPNATTVQNVGNVAFSADDERLLFSGVPPGETKREIYSIRLDGSGLTRLTNNGWDDVYPDGY
JGI11944J13513_1001978	JGI11944J13513_10019783	F045834	MKRQNDTRMLLFLMTGTAFFFLAAAVPLSGVGFFLLAQATALVLGGGTLVSLFRRYHGLDLFSAASIYVLYVLMIALFSPGVVNTLARHLTK*
JGI11944J13513_1002390	JGI11944J13513_100239010	F039694	MKALLAATGRDREIRSGRQAHMESNIVDTMRRYFQNDTGKTKGDIEYAILNSVKRYFEGKPPEKLR*
JGI11944J13513_1002428	JGI11944J13513_100242814	F054063	MAEDMKLRFTQIIMNAWLYGVESTANIFFERPKLFYRRWGSIAIRPFIESWGELGMEFVKGLSSYETVKMFIDALVKAQFFNQNDFEFGGDDKKFIFKAINCPYKSHCRILKTENKEIACLRAITLLGALDYNVEGESSKYTYNFEFNIDAPCIVSFERFKD*
JGI11944J13513_1002446	JGI11944J13513_100244611	F101439	MPYSICEHCAFETQDPAKRICEYCRSELLLKCPFCGKTIEKERTIYCGHCGEKLKISIVPIQ*
JGI11944J13513_1002688	JGI11944J13513_100268812	F042959	MARRKQPAGRIDLKALDASEIRVRLKEVGPVAEIRLTRANLPLFEEDEFELSLAWGGQRKKFKIPVREGRPLFGALPDSVTPLADRRPQKGSETLIRELTLAGAAGEATFPMSWGYAVPEEWKPLETVYNRVIEMARTYSGWQVF*
JGI11944J13513_1002688	JGI11944J13513_10026882	F055836	VVAIYARRLSRQILGLITILFRGPMIALLSLCRFLKFNCIFTVYPGSEKDIEGYLPPGFKWAKHLVSGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKQDKKLVGTIMKNLKLTKSLTGAKTIAIAGQGPRFFKSHFPYEQPFVYGLKGRVFSVVETVERVAERHGLIKSETTVAILGVGEIGAAIIDNLEKKGYRAVGIDIRVVDGRVEIGHEGVETLRGADLVIVQTPRGDDVVPYYENLKKTAILIDDAHPRITIKPGEVKFYKVAIGRSGVEFKPPLPGYEKYWIPGCVQESLVVAESGKVDMSQEDFNKRSKELGFFAHLVDDR*
JGI11944J13513_1003370	JGI11944J13513_10033709	F067893	MQTVYPRYTMAERLVLAVVAVVTWPAARFLGWVRRKAAAGPAP
JGI11944J13513_1004640	JGI11944J13513_100464010	F070633	VLDVSHSNSDDGFTYSVRQHIPLGPKRCASSYNLVVVPLSDGIMTSIERENFNIAMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPK
JGI11944J13513_1006238	JGI11944J13513_10062382	F103516	MQTVLILFFAALLAGCGAATNVQVMKPVNGEIHSFLTPELQKSRCYNFLSAGREGEMIAKKSNVLLNECNLTAKDAVDRVIYLTYTTRDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDTGYVRGYEPEWVVRALYREVKLQDGKIVVVRDGMTKEEFMKEDEIEHYKKLNRMLQEKK*
JGI11944J13513_1006238	JGI11944J13513_10062384	F057477	MKDKDCITGDPDMTTPKLKDSSSTALLALAVLFLAPGLSILSPDGRFFFLVPAGLVSAVVAIAAPSGRKRAAALIGLCVAVVMAIQAWPEVKSLDAAGKGHTTRPAVQGR*
JGI11944J13513_1007134	JGI11944J13513_10071342	F043670	MDVTEYIRGDRNPYLGKYRIDEYDLERDKILRGSWQKNLITNKLKAALADAITGDYDADDHVIGKLAVGTGSTAPAATDLSLTTQLGPLKSYVPNSLHNDTYSNKAEATYYFDYTETDYYGTWAELGLYAANGTDLLTHSLISPTKTFSNTKTMTVYYVIEF*
JGI11944J13513_1007736	JGI11944J13513_10077361	F035532	NVERLFSSEEGLSSVKTWTRPAKITDSFETPEVSLELIAGSIDSVSLSYPNRQIEFYVRFVIFEEQTISSSIIGTIYSGIIGGVRKYPDLKDKSGKATCDYFGTFYGRTISFDLAATERNGVSMNAMKIDVPCLLRDL*
JGI11944J13513_1007901	JGI11944J13513_10079013	F067453	MITRSLGISPGLPWGGPLPGGGYEGKTKRLDRAVQRFAEWLQARIAGPVQVRFNSHRLSGGAFVYPGLAADAPITFDTPEIGLGARLVTPPAVVRRHDRAWQRGEGASLPALEWEECWTEQTPLSYNVLIYPQFLRVAGDLGDERPGSRFGYWSAGTPQEAYRLLKRLVNFPVRASR*
JGI11944J13513_1009784	JGI11944J13513_10097843	F035532	LSFDPVSFLSNVERLFSSEEGLSSVKTWTRPAKITDSFETPEVSLELIAGSIDSVSLSYPNRQIEFYVRFVIFEEQTISSSIIGTIYSGIIGGVRKYPDLKDKSGKATCDYFGTFYGRTISFDLAATERNGVSVNAMKIDVPCLLRDL*
JGI11944J13513_1009874	JGI11944J13513_10098741	F053881	MTGLLKISKESLGEKERKIYSKLYRHIIESFEIDEIAADQISLALVCQKCILLPRILSGEDVDINQVSESIRKWLSEYRLTPKSREKEKEVTINLSAIIEEIHRERENP
JGI11944J13513_1016370	JGI11944J13513_10163703	F043670	MDITEHIRGDKNPYLGKFRIDEYNIERDKIIRGSWQKNLITNKLKAALADVLTGDYDANKHVIGKLAIGTGTTTPAAADLSLANQLGALKSYVPNSLHNNTYSNKAEGTFYFDSAESNYYGTWGELGLYTANQTDLLTHSLISPTKTFDNTKTMTVYYVIEF*
JGI11944J13513_1016431	JGI11944J13513_10164312	F043670	LDIIELVRGDKNPYLGKFKIVEHDLERDRIIGGSWQKNLITNKLKAALADVLTGDYDANKHVLGKLAVGTGSSAVAATDLALTTQLGSLKSYVPGSLHNNTFSNKSEATYYFDYTEADYYGTWAELGLYAANQTDLLTHSLISPTKTFSNTKTMTVYYVIEF*
JGI11944J13513_1024061	JGI11944J13513_10240612	F053881	MKAIAKISKDSLGEKEGKLYSKFYRHITQNFEIDEIAADQIAMAIVNQKCILLPRLLSGEDVDISLASESIRKWLSEYRLTPKSREKDKEVTINLSAIIEEIHREREDKS*
JGI11944J13513_1047670	JGI11944J13513_10476702	F001057	MKTTVELDASNRIVLSRELRRAAGIPRKQKLLVSATPGRIVLEMPANTSGRLIPRGKLKVWTGAVPATPVEEAVEQSRHYTR*
JGI11944J13513_1054006	JGI11944J13513_10540061	F069722	VGLNAELDPKAKKERPDLEKGAAHAKALGHRSGAALQKR*
JGI11944J13513_1061285	JGI11944J13513_10612852	F029922	TREELYTFSIIELSEMIMSIEHAISYTEGYRFLLLCFGNEGSSDKAKTIMKGLEDYLFLVKDVYRFKVNEKKRKENFFMGEIC*
JGI11944J13513_1064712	JGI11944J13513_10647121	F070633	FVYSVRQHLPIGPKKCTGGFNLVVVPLSDGILTSIDRDNFNVAVDTEGRLILTRLDRKIQLVFDYDKGFMTGVLGGVLYDTFEIPKHEGTDYHG*
JGI11944J13513_1071782	JGI11944J13513_10717821	F053881	MKAIAKISKDSLDEKEGKLYSKVYRHIIQNFEIDEIAADQIAMAIVNQKCILLPRLLSGEDVDISLASESIRKWLSEYRLTPKSREKDKEVTI
JGI11944J13513_1071782	JGI11944J13513_10717822	F070633	RIVLDVSHSNSDDGFTYSVRQHIPLGPKRCASSYNLVVVPLSDGIMTSIERENFNISMDTEGRLILTRKDRKVQLVFDYGSGFMTGVLGGVLYDTFEIPKKEETDYHG*
JGI11944J13513_1080027	JGI11944J13513_10800271	F103516	TPELQKSRCYNFLSAGREGEMIAKKSNVLLNECNLTAKDAVDRVTYLTYTTRDAYVAESGENQVISKRVMGNKDIEIESRLFYEKEGGVRGIQVLINDFVDKNYVKGYEPEWVVRALYREVKMQDGKIVVVRDGMTRDEFMKEDEIEHYKKLNRMLK*