3300001077: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost

Overview

Basic Information

• IMG/M Taxon OID: 3300001077
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0000103 | Gp0054749 | Ga0002684
• Sample Name: Cellulose adapted compost microbial communities from Newby Island Compost Facility, Milpitas, CA, USA - BGW Initial Compost
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 236465129
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Feedstock → Composting → Unclassified → Feedstock Adapted Compost → Comparative Metagneomics Of Mesophilic And Thermophilic Cellulose-Adapted Consortia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Berkeley, CA
• Coordinates
  • Lat. (^o): 37.86971
  • Long. (^o): -122.31414
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024195	Metagenome / Metatranscriptome	207	Y
F036417	Metagenome / Metatranscriptome	170	Y
F098955	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12419J13241_1000197	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	17824
JGI12419J13241_1001633	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Tectiliviricetes → Kalamavirales → Tectiviridae → Deltatectivirus	7865
JGI12419J13241_1007798	All Organisms → cellular organisms → Bacteria	3384
JGI12419J13241_1008753	All Organisms → cellular organisms → Bacteria	3162
JGI12419J13241_1084119	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	563

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12419J13241_1000197	JGI12419J13241_100019723	F024195	MGDKVFNVLGAIVTVALVTTIVSRPTSAQVIKSMGDAFAGSIRAALGK*
JGI12419J13241_1001633	JGI12419J13241_10016332	F024195	VSGDKIFNVLGAIVTVALVTTVVSRPTSAQVIKAMGDAFSGSIRAALGK*
JGI12419J13241_1007798	JGI12419J13241_10077981	F098955	MDSSAIPVFLAGPFPVLHTARVLHDEQEVELDVALLIGGMPTMLAATRFPLDETWERIQRALSSGDARLAVAGVPHEAQSITGAPEIYPSAYVGLECANGERLVLAHIKGPDRQQEAEGYARSVIS
JGI12419J13241_1008753	JGI12419J13241_10087532	F098955	MDSSAIPVFLAGPFPVLHTFRVQEIEQEVELDVALLISGIPTMLAATRFPLDDTWERIQRALSSGDARLGVAGMPHETQSITGTPEIFPSAYVGLECANGERLVLAHIKGSNREQESEAYARSVISAILEGKTPAELGEPIED*
JGI12419J13241_1084119	JGI12419J13241_10841192	F036417	SSCPGATDRLFVSSMVYPARVPLRKRIPTVLVRLATDDGEVVFRARWNRSPLELQRNILFRLRRGAPLWFEDEWGHGLCFRPECVWAAMVDGR*