3300001046: Marine microbial communities from the Deep Indian Ocean - MP1202

Overview

Basic Information

• IMG/M Taxon OID: 3300001046
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054730 | Ga0000788
• Sample Name: Marine microbial communities from the Deep Indian Ocean - MP1202
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 38186339
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -30.33
  • Long. (^o): 103.31
  • Alt. (m): N/A
  • Depth (m): 4000.85

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006423	Metagenome	373	Y
F012125	Metagenome	283	Y
F013096	Metagenome / Metatranscriptome	274	Y
F020717	Metagenome / Metatranscriptome	222	Y
F063069	Metagenome	130	Y
F082562	Metagenome	113	N
F089571	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12195J13216_1002928	All Organisms → cellular organisms → Archaea	1926
JGI12195J13216_1004411	Not Available	1470
JGI12195J13216_1004631	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1418
JGI12195J13216_1006507	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1106
JGI12195J13216_1006683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. IMCC9063	1083
JGI12195J13216_1010592	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	741
JGI12195J13216_1011328	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	701
JGI12195J13216_1015842	All Organisms → cellular organisms → Archaea	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12195J13216_1002928	JGI12195J13216_10029283	F012125	MSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLXIFMFXWFD*
JGI12195J13216_1004411	JGI12195J13216_10044112	F020717	MTRKQSEIFDISIVACTRFLALLETTQCWDFLRAHHILHENKDIWCFRDLNEQKDISISALILMLSEN*
JGI12195J13216_1004631	JGI12195J13216_10046311	F089571	MIKKERKMYQNIIVLMIPILFLIAPAKSQHVKQKYATTEMDEKVILNENGTWEYLGEDKQDYTLKKVPPKIYNYDSTPQTWEERTEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIHEDFQRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNSEY
JGI12195J13216_1006507	JGI12195J13216_10065072	F089571	MFIIYLDKENERKMLKNIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERLEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLAKGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYEQRNYIPLPEDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSPYDPDNPPIIHGDGFPYIQRGHLTLSRREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGNGTIETVIFEEVWLKINPYN
JGI12195J13216_1006683	JGI12195J13216_10066832	F063069	NSALEIFNSCLILELNKPIKKLWPILEKKVKTNPKIIILKLDLTISIIIL*
JGI12195J13216_1010592	JGI12195J13216_10105921	F082562	MNKLILSILITLSTVLFAQASDSSNNYFFNIELSLIHPILGGFGGTVGIEKNHFSYGLNSFGTKLNHMTKHYLLENAEELAVYNWGVELYSDYYFKQNHTGLFLGLILSLNGFRFNDIPNPQTILVLYSAPRIGYRLCLPKKLKSFYFQYSLTTHFKVWDDEKKFLYREIDTKSIFLLSQLTLGVKIXXXXXXX
JGI12195J13216_1011328	JGI12195J13216_10113281	F013096	MVTDVVGDSAVGLSTLSHTNTVAVYEPEALGVHDNA
JGI12195J13216_1015701	JGI12195J13216_10157011	F006423	NTEKYVANDGDYWYVGRVGMKGGSSFLKFVAAHGKDSYFESGKLKKVTPKEIEKDATKSPSIINTVDFKKLYKK*
JGI12195J13216_1015842	JGI12195J13216_10158421	F013096	MVVLTGGDNAVGLSIDSQTNAVAVYVPASVGIHDKAGLND*PLES*PVIHASETVTPLPS*ICTKYANACSL