3300000974: Marine microbial communities from the Deep Atlantic Ocean - MP1092

Overview

Basic Information

• IMG/M Taxon OID: 3300000974
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054791 | Ga0000792
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP1092
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25480041
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: South Indian Ocean
• Coordinates
  • Lat. (^o): -29.81
  • Long. (^o): 82.62
  • Alt. (m): N/A
  • Depth (m): 4000.29

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012125	Metagenome	283	Y
F041257	Metagenome / Metatranscriptome	160	N
F069480	Metagenome	124	N
F071320	Metagenome / Metatranscriptome	122	N
F082562	Metagenome	113	N
F085813	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12031J13088_100156	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum	4183
JGI12031J13088_101224	Not Available	1763
JGI12031J13088_103290	Not Available	1027
JGI12031J13088_104174	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	881
JGI12031J13088_106326	Not Available	677
JGI12031J13088_109076	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	548

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12031J13088_100156	JGI12031J13088_1001561	F069480	MPNHIEFIDRIYILELCKDVKRVEGNAGQILDEAPKNKPYNTMKTDFFSVFKLEFFSENIQVF
JGI12031J13088_101224	JGI12031J13088_1012243	F012125	MSDTRYSVMHPDGGKDSFFSAGKPKNLPRFYFLVLAGIFLIIFMFXWFD*
JGI12031J13088_103290	JGI12031J13088_1032902	F071320	VISWEATVSQGWEKIARDDKLYSMASRVPVFDADIPLRESVFFLSNPSSCSRNNPDR
JGI12031J13088_104174	JGI12031J13088_1041742	F085813	MDQFEIIWILATVIGALNYGLNAYQKGFRRLLKWDVIFLIVLNTLMFVPLSLIVGL*
JGI12031J13088_106326	JGI12031J13088_1063262	F041257	MQEFKPNYRPLGSEEDDVVDPRSEQADGPFDHERFKTLTVLAHAAGRVMDRYAIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDV
JGI12031J13088_109076	JGI12031J13088_1090761	F082562	QTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTLGMKI*