3300000966: Marine microbial communities from the Deep Atlantic Ocean - MP0145

Overview

Basic Information

• IMG/M Taxon OID: 3300000966
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053074 | Gp0054787 | Ga0000816
• Sample Name: Marine microbial communities from the Deep Atlantic Ocean - MP0145
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 15807645
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Deep Ocean Microbial Communities From The Global Malaspina Expedition
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: West of Cape Verde, Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.52
  • Long. (^o): -26.0
  • Alt. (m): N/A
  • Depth (m): 4005.01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069480	Metagenome	124	N
F082562	Metagenome	113	N
F084715	Metagenome / Metatranscriptome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12025J13092_103145	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	972
JGI12025J13092_104876	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	664
JGI12025J13092_106326	Not Available	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12025J13092_103145	JGI12025J13092_1031452	F069480	MPNYIEFIDRIYILELCKDVKRVEGNAGQILDEAPKNKPYNTMKTDFFSVFKLVVFL*
JGI12025J13092_104876	JGI12025J13092_1048761	F082562	MNNIILMKTIILGILITLXTNLFAQTNDSLRNYFLDIELSIIHPILGGFGGTIGIERNHSSFGVMGFGTKLNHMMKHYFIEDAEELAVYNWGVELYSDYYIKQNHRGLFIGSLVSINGFRFTDIPNPQTILVLYAVPRVGYRICLPKKLNAFYFQPSLTAHIKFWDNQEQFLYREIDTKSIFLLSQLTFGMKI*
JGI12025J13092_106326	JGI12025J13092_1063263	F084715	ATKVIPIIASIIFVLEFEVNNPTAHVNITRDITLGFISNMKDFI*