3300000931: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2)

Overview

Basic Information

• IMG/M Taxon OID: 3300000931
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053056 | Gp0054374 | Ga0001895
• Sample Name: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and P1 (2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 299537373
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.967317
  • Long. (^o): -67.018833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015419	Metagenome / Metatranscriptome	255	Y
F017885	Metagenome / Metatranscriptome	238	Y
F033243	Metagenome	178	Y
F049899	Metagenome	146	N
F080377	Metagenome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12531J12852_10000008	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	265845
JGI12531J12852_10037833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1682
JGI12531J12852_10067815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	857
JGI12531J12852_10108233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	546
JGI12531J12852_10114064	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12531J12852_10000008	JGI12531J12852_1000000893	F015419	MNLIINHKLNMKLELKITDEQGNEHLYNVVRSSDGEPNNLNDFILDALQISEDKRKLPFIITTPNGSEYYPLIKMKYENYGSSILGDKLEALIVRW*
JGI12531J12852_10037833	JGI12531J12852_100378333	F033243	MKRKHHDTLGLLKQGPIDLVGHGAEPVLAAGYSTLELERAGLTVEKARELGIPVDAGRCSGVGANVMQLRALLTS*
JGI12531J12852_10067815	JGI12531J12852_100678153	F017885	MANPNADVAGFQCPKCGQELEQTIGQLKSSEHMICSGCGIGINIDTNRLANLADELQKATAKVPPEITVKFYR*
JGI12531J12852_10108233	JGI12531J12852_101082332	F080377	MRAKQSILGLVDSRGEIRRAPLIGMEFLHQGAMGTADLVRPRARL
JGI12531J12852_10114064	JGI12531J12852_101140641	F049899	LGQLVLAVGFETSAQNIVQAIIIIASVGLVEAGRRLRFEWIRFKFWITSPDVEFRIRTTFTRTMTRLGLAKLLDVAPQVRWRWRTAYLRLKKRLDITE*