3300000920: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (2)

Overview

Basic Information

• IMG/M Taxon OID: 3300000920
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053056 | Gp0054419 | Ga0001686
• Sample Name: Aerobic enrichment media microbial communities from Bioluminiscent Bay, La Parguera, Puerto Rico - Tt and M1 (2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 52746859
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Aerobic Media → Unclassified → Aerobic Enrichment Media → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Bioluminescent Bay, La Paraguera, Puerto Rico
• Coordinates
  • Lat. (^o): 17.967317
  • Long. (^o): -67.018833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023595	Metagenome / Metatranscriptome	209	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12573J12842_1000126	All Organisms → cellular organisms → Bacteria	54648
JGI12573J12842_1000165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	46129
JGI12573J12842_1000233	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	34265
JGI12573J12842_1000348	All Organisms → cellular organisms → Bacteria	24258
JGI12573J12842_1000563	All Organisms → cellular organisms → Bacteria → Proteobacteria	13504
JGI12573J12842_1000708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	9312
JGI12573J12842_1003853	Not Available	1364

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12573J12842_1000126	JGI12573J12842_100012648	F023595	MVDFGFEQGLSDLETAGIVDYFEDFQRAKTPLGAKRCRL*
JGI12573J12842_1000165	JGI12573J12842_10001652	F023595	MVDFGSEQGLSDLETAGIVDYFEDFKRAKTPLGAKRCHLWMDTI*
JGI12573J12842_1000233	JGI12573J12842_10002331	F023595	MVDFGSEQGLSDFETAGIVNYFEDFKRAKTPLGAKRCH
JGI12573J12842_1000348	JGI12573J12842_100034814	F023595	MVDFGFEQGLSNLETAGIVDYFEDFQRAKTPLGAKRCRLWMGTI*
JGI12573J12842_1000563	JGI12573J12842_10005631	F023595	MVDFGFEQGLSDFETAGIVDYFEDFKRAKTPLGAKRC
JGI12573J12842_1000708	JGI12573J12842_10007081	F023595	MVDFGFEQGLGDFETAGIVDYFEDFKRAKTPLGAKRCHLW
JGI12573J12842_1003853	JGI12573J12842_10038531	F023595	VDFGSEQGLSDLETAGIVDYFEDFKRAKTPLGAKRCHLWMDTI*