Sample 3300000685

Overview

Basic Information
IMG/M Taxon OID	3300000685 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054770 \| Ga0001936
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	6190283
Sequencing Scaffolds	8
Novel Protein Genes	8
Associated Families	8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000466	Metagenome / Metatranscriptome	1105	Y
F012657	Metagenome	278	Y
F013709	Metagenome / Metatranscriptome	269	Y
F034415	Metagenome / Metatranscriptome	175	Y
F052920	Metagenome / Metatranscriptome	142	Y
F085267	Metagenome	111	N
F091102	Metagenome	107	N
F104209	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F000466

Metagenome / Metatranscriptome

1105

F012657

Metagenome

278

F013709

Metagenome / Metatranscriptome

269

F034415

Metagenome / Metatranscriptome

175

F052920

Metagenome / Metatranscriptome

142

F085267

Metagenome

111

F091102

Metagenome

107

F104209

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
JGI12297J11905_100123	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
JGI12297J11905_100160	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1413	Open in IMG/M
JGI12297J11905_100760	Not Available	744	Open in IMG/M
JGI12297J11905_100800	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
JGI12297J11905_100816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
JGI12297J11905_101309	Not Available	598	Open in IMG/M
JGI12297J11905_101512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
JGI12297J11905_101727	Not Available	537	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12297J11905_100123

All Organisms → cellular organisms → Bacteria

1522

Open in IMG/M

JGI12297J11905_100160

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter

1413

Open in IMG/M

JGI12297J11905_100760

Not Available

744

Open in IMG/M

JGI12297J11905_100800

All Organisms → cellular organisms → Bacteria

730

Open in IMG/M

JGI12297J11905_100816

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium

725

Open in IMG/M

JGI12297J11905_101309

Not Available

598

Open in IMG/M

JGI12297J11905_101512

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

566

Open in IMG/M

JGI12297J11905_101727

Not Available

537

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12297J11905_100123	JGI12297J11905_1001231	F104209	ACDRDSTRRQERRNGHGGAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12297J11905_100160	JGI12297J11905_1001601	F085267	MSFLRHGEIYPWHEGTISRPCPRPSQWMSFQPVIPGGLLSSRARVRFTSRR
JGI12297J11905_100760	JGI12297J11905_1007602	F034415	RSLHLIEAEAYRRIMAGEAPATLDEFAQQLLHWLRQSYPEAAPTTLATVENQIRETWHRRHDMIQGGGL*
JGI12297J11905_100800	JGI12297J11905_1008002	F052920	MRHEVHSHGTAAYIAPFSERTDVHWETTNLPVWNAEGAAEQQELVYEVSWIKELGMWRRFXTSRCKVGSGRQEVPC*
JGI12297J11905_100816	JGI12297J11905_1008161	F000466	MAHLLTYMTTPEAWQRWKKLPSQGVVKRDWVPTGRIDFATRFYGNLEDSDQPSEFKLIVEERRIVESITGNENLEIQWRLATLNEAKVVVAQYHKYLSENSLIKSVFDEPASLPPPKRIQKI
JGI12297J11905_101309	JGI12297J11905_1013091	F091102	ICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVADIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEE
JGI12297J11905_101512	JGI12297J11905_1015121	F013709	ASVTTLPEVSVTQSNRETWHSEDVKDLLGNAVVLKQTSIDGKFDLVILQKGKHSFLSFVKHSRWEFVHDRPAKGKLMNLRAKFENGEEKHIEWDELGFATADLYSVLWSYPAKTDALIGPAVEGDHGDSVGGDELFVQDMMKHTAMLLEVEPGVTTQFNVTGLAREIDKARTPKPRAVLEAQQTPE*
JGI12297J11905_101727	JGI12297J11905_1017271	F012657	HQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG

Scaffold ID

Protein ID

Family

Sequence

JGI12297J11905_100123

JGI12297J11905_1001231

F104209

ACDRDSTRRQERRNGHGGAGTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*

JGI12297J11905_100160

JGI12297J11905_1001601

F085267

MSFLRHGEIYPWHEGTISRPCPRPSQWMSFQPVIPGGLLSSRARVRFTSRR

JGI12297J11905_100760

JGI12297J11905_1007602

F034415

RSLHLIEAEAYRRIMAGEAPATLDEFAQQLLHWLRQSYPEAAPTTLATVENQIRETWHRRHDMIQGGGL*

JGI12297J11905_100800

JGI12297J11905_1008002

F052920

MRHEVHSHGTAAYIAPFSERTDVHWETTNLPVWNAEGAAEQQELVYEVSWIKELGMWRRFXTSRCKVGSGRQEVPC*

JGI12297J11905_100816

JGI12297J11905_1008161

F000466

MAHLLTYMTTPEAWQRWKKLPSQGVVKRDWVPTGRIDFATRFYGNLEDSDQPSEFKLIVEERRIVESITGNENLEIQWRLATLNEAKVVVAQYHKYLSENSLIKSVFDEPASLPPPKRIQKI

JGI12297J11905_101309

JGI12297J11905_1013091

F091102

ICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVADIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEE

JGI12297J11905_101512

JGI12297J11905_1015121

F013709

ASVTTLPEVSVTQSNRETWHSEDVKDLLGNAVVLKQTSIDGKFDLVILQKGKHSFLSFVKHSRWEFVHDRPAKGKLMNLRAKFENGEEKHIEWDELGFATADLYSVLWSYPAKTDALIGPAVEGDHGDSVGGDELFVQDMMKHTAMLLEVEPGVTTQFNVTGLAREIDKARTPKPRAVLEAQQTPE*

JGI12297J11905_101727

JGI12297J11905_1017271

F012657

HQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000685: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences