3300000658: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 38

Overview

Basic Information

• IMG/M Taxon OID: 3300000658
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0075432 | Gp0054837 | Ga0001961
• Sample Name: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 38
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 805377
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Luquillo Experimental Forest Soil, Puerto Rico
• Coordinates
  • Lat. (^o): 18.0
  • Long. (^o): -65.0
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007624	Metagenome / Metatranscriptome	348	N
F078037	Metagenome	116	N
F085267	Metagenome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI12336J11891_10035	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1298
JGI12336J11891_10113	Not Available	702
JGI12336J11891_10196	Not Available	517

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12336J11891_10035	JGI12336J11891_100351	F085267	MSFLRHGEIYPWHEGTISRPCPRPSQWMSFQPVIPGG
JGI12336J11891_10113	JGI12336J11891_101132	F007624	CSEPMQLREGSFHGPRPGCPEHPKQRVHRHGFYVRFENCDSQRRLRIERFVCPRCGRTLSILPKNRLPYIAVNATLVESEFDARTSGTDPPSSSEKERGCLRRAFERFAARVTPVCALLGQMITRIKPSVGECWKELRQLDNLEGILLLLGTKFNTSLLADYRCVQSGF*
JGI12336J11891_10196	JGI12336J11891_101961	F078037	GLEKCKSSRAVSELEALMDVKLIAAVLVTAATASAALAQGPSTEKLKADAQKVVKIISSDSAKVQVYCETMDLSDQMDDAEDANDSAKAEGLRKKIDELNQKLGPEYLKLVQDLEGIESNSRDGQEIGRTLDALDKLCK*