3300000477: Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED

Overview

Basic Information

• IMG/M Taxon OID: 3300000477
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0053562 | Ga0026747
• Sample Name: Alkaline sediment microbial communities from Lake Bitter, Kulunda Steppe, Russia - 5KL_010_SED
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 312269109
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	3
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe, Lake Bitter
• Coordinates
  • Lat. (^o): 51.4
  • Long. (^o): 79.54
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011425	Metagenome	291	Y
F015419	Metagenome / Metatranscriptome	255	Y
F066493	Metagenome	126	Y
F079661	Metagenome	115	Y
F094519	Metagenome	106	Y
F098192	Metagenome	104	Y
F105255	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SL_5KL_010_SEDDRAFT_10000930	All Organisms → cellular organisms → Bacteria	18339
SL_5KL_010_SEDDRAFT_10009687	All Organisms → Viruses → Predicted Viral	3811
SL_5KL_010_SEDDRAFT_10010048	All Organisms → Viruses → Predicted Viral	3711
SL_5KL_010_SEDDRAFT_10026660	All Organisms → Viruses → Predicted Viral	1742
SL_5KL_010_SEDDRAFT_10044458	Not Available	1104
SL_5KL_010_SEDDRAFT_10055460	Not Available	911
SL_5KL_010_SEDDRAFT_10070336	All Organisms → cellular organisms → Bacteria	744
SL_5KL_010_SEDDRAFT_10080260	Not Available	669

Sequences

Scaffold ID	Protein ID	Family	Sequence
SL_5KL_010_SEDDRAFT_10000930	SL_5KL_010_SEDDRAFT_1000093017	F011425	MPDRRHFLSTLAGASLAGAAGLVRPPSLSAAPTAWL
SL_5KL_010_SEDDRAFT_10009687	SL_5KL_010_SEDDRAFT_1000968711	F015419	MKYEIKITDEAGNVSSYNLTCSSSDQPKNLNDFILDALRVSEDKRKLPFMIQCPNGLEVYPSIKMKFENYGSALLDDKLEAMHVTWRD*
SL_5KL_010_SEDDRAFT_10010048	SL_5KL_010_SEDDRAFT_100100485	F094519	MSKNVLKTVEQLSIGTTTSIGSTSWGGQTDGIGSVMGSTWSAKIIEDAQPDRVLSKYFLEFNDLMGNNDVTLIIPKIGDVNLMGGRAGSAEGKSRVLTAFDSADNITVSLTADDVKLGGCAISFETASATRVSIINMAHKQLTRQYLETIETDGNALLESATVSADAASAVFGGDATQTSELEDGD
SL_5KL_010_SEDDRAFT_10026660	SL_5KL_010_SEDDRAFT_100266605	F079661	MTEKTTIEVSEDVRDRLKDERLPHESNYSNTIRRLLSDGTGGQLWTEAEIRDMARDEAESLARGGR*
SL_5KL_010_SEDDRAFT_10044458	SL_5KL_010_SEDDRAFT_100444581	F066493	SQREWHDGVVDVADELVQEHGAQGALERLNNRRQSTRSDELQARCEAAMAWIKREVNDE*
SL_5KL_010_SEDDRAFT_10055460	SL_5KL_010_SEDDRAFT_100554601	F066493	MSDAREFDSGVVDVADELVQRHGTSGAIDRLQRRRQTSNDELQARCTEAIA
SL_5KL_010_SEDDRAFT_10070336	SL_5KL_010_SEDDRAFT_100703362	F098192	MKCPLRIDSQGNASDCYKNECAWWVADAEIENSVTEGACAVLEVAVNGIFVTIGDDE*
SL_5KL_010_SEDDRAFT_10080260	SL_5KL_010_SEDDRAFT_100802602	F105255	TKLVDKHYSPLVIRKYTHYGFPIYIGLITDNDLSDLDKVVVEFMEENKETHWVNDIQKIRNLAGALTEHLNDHYDRAEGVAVVFYVDKMFISSLHGDFMNHTSCRIEFYSLLTMSTGV*