3300000369: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3

Overview

Basic Information

• IMG/M Taxon OID: 3300000369
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053056 | Gp0053723 | Ga0026381
• Sample Name: Marine microbial community from Union City, CA, USA - Pond 2C Liquid 3
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17102308
• Sequencing Scaffolds: 21
• Novel Protein Genes: 36
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
Not Available	12
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → pond → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Eden Landing Ponds, San Francisco, CA, USA
• Coordinates
  • Lat. (^o): 37.568817
  • Long. (^o): -122.10315
  • Alt. (m): N/A
  • Depth (m): .11

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F001588	Metagenome / Metatranscriptome	667	Y
F003440	Metagenome / Metatranscriptome	486	Y
F004712	Metagenome / Metatranscriptome	427	Y
F007024	Metagenome / Metatranscriptome	359	Y
F009597	Metagenome / Metatranscriptome	315	Y
F010166	Metagenome / Metatranscriptome	307	Y
F011526	Metagenome / Metatranscriptome	290	Y
F012349	Metagenome / Metatranscriptome	281	Y
F012991	Metagenome / Metatranscriptome	275	Y
F023291	Metagenome / Metatranscriptome	210	Y
F023480	Metagenome / Metatranscriptome	210	Y
F024076	Metagenome / Metatranscriptome	207	Y
F025393	Metagenome / Metatranscriptome	202	Y
F038865	Metagenome / Metatranscriptome	165	Y
F040050	Metagenome / Metatranscriptome	162	Y
F040106	Metagenome / Metatranscriptome	162	N
F041087	Metagenome / Metatranscriptome	160	Y
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F043624	Metagenome / Metatranscriptome	156	Y
F052547	Metagenome / Metatranscriptome	142	N
F053071	Metagenome / Metatranscriptome	141	Y
F055541	Metagenome / Metatranscriptome	138	Y
F066701	Metagenome / Metatranscriptome	126	Y
F072835	Metagenome / Metatranscriptome	121	Y
F074584	Metagenome / Metatranscriptome	119	Y
F080057	Metagenome / Metatranscriptome	115	N
F082266	Metagenome / Metatranscriptome	113	Y
F084310	Metagenome / Metatranscriptome	112	Y
F085330	Metagenome / Metatranscriptome	111	Y
F096901	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
P_2C_Liq_3_UnCtyDRAFT_100012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	46396
P_2C_Liq_3_UnCtyDRAFT_100043	Not Available	31732
P_2C_Liq_3_UnCtyDRAFT_100062	Not Available	28908
P_2C_Liq_3_UnCtyDRAFT_100115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	22636
P_2C_Liq_3_UnCtyDRAFT_100120	Not Available	22391
P_2C_Liq_3_UnCtyDRAFT_100124	All Organisms → cellular organisms → Bacteria	22230
P_2C_Liq_3_UnCtyDRAFT_100142	Not Available	21375
P_2C_Liq_3_UnCtyDRAFT_100176	Not Available	19362
P_2C_Liq_3_UnCtyDRAFT_100204	Not Available	18045
P_2C_Liq_3_UnCtyDRAFT_100220	Not Available	17396
P_2C_Liq_3_UnCtyDRAFT_100297	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	14874
P_2C_Liq_3_UnCtyDRAFT_100395	All Organisms → cellular organisms → Bacteria	13289
P_2C_Liq_3_UnCtyDRAFT_100416	Not Available	12928
P_2C_Liq_3_UnCtyDRAFT_100528	All Organisms → cellular organisms → Bacteria	11355
P_2C_Liq_3_UnCtyDRAFT_100541	Not Available	11092
P_2C_Liq_3_UnCtyDRAFT_100731	Not Available	9213
P_2C_Liq_3_UnCtyDRAFT_100799	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	8763
P_2C_Liq_3_UnCtyDRAFT_101043	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	7431
P_2C_Liq_3_UnCtyDRAFT_101065	Not Available	7322
P_2C_Liq_3_UnCtyDRAFT_101160	Not Available	6975
P_2C_Liq_3_UnCtyDRAFT_101174	All Organisms → cellular organisms → Bacteria	6928

Sequences

Scaffold ID	Protein ID	Family	Sequence
P_2C_Liq_3_UnCtyDRAFT_100012	P_2C_Liq_3_UnCtyDRAFT_10001239	F001506	MNRVLYENRCKCNEEVVVTKKRKLSNRNDGKPFLYPTQNEITIKTFQIKYEKKLSIVAKCILNSFQNKYLYYAIDDILYLLKSNKVEQDELLNILYSSVLKLQNHLSINFFDIWIHEIYINEVKPKNKFLVQNSSNSNFISYITIKFLYRTKIPIKKQESLW*
P_2C_Liq_3_UnCtyDRAFT_100043	P_2C_Liq_3_UnCtyDRAFT_10004325	F085330	MKTLYEVLNVDLAQEYTKARKLALVKELALEDDLMSEVEAAVEAMDIPTDDDRLHWIEKLGRAAGADLLTLGKVQPENMLAMANLSAEDFQAAVKVATNSARSWNQLTVSAEKDLNAETIPSTMV*
P_2C_Liq_3_UnCtyDRAFT_100043	P_2C_Liq_3_UnCtyDRAFT_10004326	F072835	MALPPTGSTISMSDIRNYFVSGGQASSYTISVLGTYIGISAGSVISMSSSFGGYYFPILP
P_2C_Liq_3_UnCtyDRAFT_100062	P_2C_Liq_3_UnCtyDRAFT_10006217	F023480	MYKTNNKLYKTLSPEIIKTTFSGLDIPFDSDWKRIGINLSGGADSALLTYLLCMIIQENKLNTQIDIITYQRCWETRPWQGYISQQVYMWLLNKFPKIVSKRHLCYIPPELEHGVIGPVIDGRSGDQIIVGSYNKFAAWHYNLDAVFNATSKNPDDLREDRMTNRDKDAEQGTLSDIWFKSRKVNSVFAHPFRFVKKDWIVAQYHINDILELYKLTRSCEGDINHHDAVKNACGHFKDYKDGMHIPECKQCWWCEERDWADSRVHQTIREINEL*
P_2C_Liq_3_UnCtyDRAFT_100115	P_2C_Liq_3_UnCtyDRAFT_10011510	F012991	MAYIYPAPGDTVGGPQVTLNLKVSGDTDGLDLPALQDVTVNAANDVFTWTQLDAASKKQIATTATNSLSMNLVLDQDTFFGATAAGEEAQTQGVFGLSTSKNKIEFELYMGDTDTGGAGKTLTGTGYITGLAPTVSADAPVWVSPITITVDSDYTVS*
P_2C_Liq_3_UnCtyDRAFT_100120	P_2C_Liq_3_UnCtyDRAFT_10012010	F041087	MDLWDKVCEQIERDINDPLNDLQALYLMLQQVPKDVLIAYLPEEESADVG*
P_2C_Liq_3_UnCtyDRAFT_100120	P_2C_Liq_3_UnCtyDRAFT_10012018	F040050	MSKLKQRADDMNDLFEIVEDLKDIDTFGSDTTAFEDIFHKWNARLIDAQEEAERQYELFEMDDGA*
P_2C_Liq_3_UnCtyDRAFT_100120	P_2C_Liq_3_UnCtyDRAFT_10012031	F001588	MQNTTTKTNNVFLTAANAAIAVHVNNTVVATDVQTADALVQVFLTHNINVLTDVIMCSSSIDFAEEEGFASDASAHNIIDEALEALA*
P_2C_Liq_3_UnCtyDRAFT_100124	P_2C_Liq_3_UnCtyDRAFT_10012423	F082266	MNNDYMTNMFIDTIQNAKKTFVDTWIKDEAMSKPLNDFIKSQTEFTKLAAKSTTDFANAVGEAMAKVTK*
P_2C_Liq_3_UnCtyDRAFT_100124	P_2C_Liq_3_UnCtyDRAFT_10012432	F038865	MAVDIVKLAPESFRTIYLRKENRVILRTEQGRKIIIKRIIPNEWKPWRIYDQELADNDNKKEIFLVDNAFLPQIVDSYKKSTRTK*
P_2C_Liq_3_UnCtyDRAFT_100142	P_2C_Liq_3_UnCtyDRAFT_1001426	F009597	MYAVMVCLDGKDDWIYITKQTQHCWDLQPELFEDAEEAMEFAKTFQLPDKPENVMVVSYYED*
P_2C_Liq_3_UnCtyDRAFT_100142	P_2C_Liq_3_UnCtyDRAFT_1001429	F074584	MKFSRWDENGTKIEMEVHDESTIDELLEEFQNFLRACGYVIDYNQCLILEDMDQ*
P_2C_Liq_3_UnCtyDRAFT_100176	P_2C_Liq_3_UnCtyDRAFT_10017617	F012349	MPQTSEVNIEWEEKYAYWPIRSSWSKKRIWLKNYWEGNIYFDAMGRPPIKEKSWKLIYSQNEYLLMLLREDAKYQHPLSNTSY*
P_2C_Liq_3_UnCtyDRAFT_100176	P_2C_Liq_3_UnCtyDRAFT_10017627	F055541	MIRWYDYPAALLAADVIISLALSIPYIGFMAAWALYEFGWGAYCQWRRKQEHGK*
P_2C_Liq_3_UnCtyDRAFT_100204	P_2C_Liq_3_UnCtyDRAFT_10020413	F023291	MNIDKVYIPFESKWKRIGISLSGGADSALLAYLILRNSNADIYFTTQVRMWKTRPWQRWIAKDVVSWFKEKFDNRIEHIEGFIPPELEEPTEYLVKDEYGAFKPGNRIILRAHNEYIGNMYKLDAWYAGVTLNPTEEFEGKLNDRDDASLPIEMRHMDATICHPFVNVRKDWIIKQYMNFEIGELLEITRSCEGEFEDLDYTNYTPYQHVPICGECFWCKEREWGIQNALK*
P_2C_Liq_3_UnCtyDRAFT_100220	P_2C_Liq_3_UnCtyDRAFT_10022027	F007024	MNVQAGDKAVIVFSINPSNIGRIVNVAEYIGKFEAGEQFEAYGMTSTCLVHDHYWWIEAEDLTIQLGPSPKAYIADSWLRKIVPPKETVTTKTEKDIDIFA*
P_2C_Liq_3_UnCtyDRAFT_100297	P_2C_Liq_3_UnCtyDRAFT_1002975	F040106	MTMQKSYCKQMRYSGPESLAPSDTDKFDVLIQMEVLAGCNHGCLGCFVDKNIDPAMNQQIIDRAKELADGVKRTGLNLREFVIGPTDFFTATNTESVLNNSTVQEIMREHTGARIAAPAKFDLATMERVQEIFDILDDENKFRREMIIEFIMPISRVSQMLDDDEYYNEVMSKVKFFKENTPKQMDWSWTLQASNVVGKKIDKETYNRIIQKSVNEYETIVEMNPAFSRANSEIVQRNNLFSWNEFLGKVIDEDNANQTVMSMANLYCNSINFIGITIVPGKDGPTTHLNVMLHEQAFFLKNKNLDVTGLTFEQILERKNELVTKGINKSSKVKDCADCKFSVACANRLIFEAQESLNVNGCVLNKNVLDHYNPYDFTWNDDAMKKLGAA*
P_2C_Liq_3_UnCtyDRAFT_100297	P_2C_Liq_3_UnCtyDRAFT_1002978	F066701	MLVHLNSTYAGYYSYEEDKSPTNIDFLRTEINLDILHGCSQQCPGCFIPRKNLTKADNLETLYNLLIKGSFYPDEITVGPTDIFDAENFDEIMNHPYMKKLYGISGVGFTSTLLQPYAEIRNKLDKIWSLYEGIHRVPDIDFKIVLDIDK
P_2C_Liq_3_UnCtyDRAFT_100395	P_2C_Liq_3_UnCtyDRAFT_1003952	F004712	MANNDIITITTSQAPDAKPVAKSFTLTQNWQTMIEVPNYEVPELVFGGSTTVEPGVGEVISPLMLCNFTANTVAVDVRTHRYDVNDEFWIVRNLQVPGYDTIPLPLNGQFFKSGDLLELKADTDLSVDATLSFTLGQSEEDDV*
P_2C_Liq_3_UnCtyDRAFT_100412	P_2C_Liq_3_UnCtyDRAFT_1004125	F003440	MRYYLGQCEYKWTHANTDMEKLWVQRELGTELFKTIDSNNWCWVLLRSSSISLPGDTYCRTMIYVDSNDDKLDTHFMLKYPQAKPLEQV*
P_2C_Liq_3_UnCtyDRAFT_100416	P_2C_Liq_3_UnCtyDRAFT_10041617	F084310	MTPVETFEYKQLWKPGYTVRLHSDVVDRGKTWCKRVCERHQWSVTTWTANYEHTFHFEHQEHAEKFITAMGEYANQTN*
P_2C_Liq_3_UnCtyDRAFT_100416	P_2C_Liq_3_UnCtyDRAFT_10041631	F043624	MVNKIYKVEDIFEDIDGDPENVLMNIPEEVSEKMGWEPGDTLKIKIEKGVITITKVDDGQE*
P_2C_Liq_3_UnCtyDRAFT_100416	P_2C_Liq_3_UnCtyDRAFT_10041637	F003440	MRYYLGQCEYKWTHANTDMEKLWVQRELGTELFKTIESNNWCWVLLRSSSISLPGDTYCRTMIYVDSNDDKLDTHFVLKYPQAKPLEQV*
P_2C_Liq_3_UnCtyDRAFT_100528	P_2C_Liq_3_UnCtyDRAFT_10052811	F074584	MKFSRWNEHGTKVEVEVHDESTLDEVLEEFQNFLRACGYVIEYNKVLDIVDMNE*
P_2C_Liq_3_UnCtyDRAFT_100541	P_2C_Liq_3_UnCtyDRAFT_10054115	F010166	MDMRSYEDWQIHDAKEGSVEEVTWNSNDLLTLPWEATYMTDEIPDDSSWDTFATKNKKALEAMYKQWGVPKEGSLHYMSIRPQLTNGLSTIIAPYAHMKFNYNFLKLTPGCSLMWHFDTYATFVRYNNIDEDDIHNVCRTVVMMRDWDRGQVLQVGDEVYTHWSAGDTYTWKGDTWHGMANFGPTDIVVSQITFLDEDDQYTQ*
P_2C_Liq_3_UnCtyDRAFT_100731	P_2C_Liq_3_UnCtyDRAFT_10073110	F011526	MIAIIESYIHHKTGKEVRISKPRTPQQFLKLTKAYESCYRYFIKN*
P_2C_Liq_3_UnCtyDRAFT_100749	P_2C_Liq_3_UnCtyDRAFT_1007491	F053071	MYEIKLVYTPEPRTQLLKESITYCATIDLFVHHGIDCFQTSATRIAFESDRDRVLGILLLSASSSFEVVCV*
P_2C_Liq_3_UnCtyDRAFT_100799	P_2C_Liq_3_UnCtyDRAFT_1007994	F042905	MLVHLNSTYAGYYSYEEDKSPTNIDFLRTEINLDILHGCSQQCPGCFIPRKNLTKADNLETLYNLLIKGSFYPDEITVGPTDIFDAENFDEIMNHPYMKKLYGISGVGFTSTLLQPYAEIRNKLDKIWSLYEGIHRVPDIDFKIVLDIDKXLDGEXDDWNRKLKMFELGSVQFRVNYHKDVFXRIGYNDLCQRIFDDYNAPVIITPSFLTDRNARGKVEQHLANFRREMLEQKIDDKWLNLYTFFDARFNGYGCQNYSFYNNKLYLNPFLYDVIIQRTPNFETTMDANTLYDNIEYAQQVDDCNGCEYMMSCAERNIHLYMESRGLESCVALKEYMHASN*
P_2C_Liq_3_UnCtyDRAFT_100799	P_2C_Liq_3_UnCtyDRAFT_1007995	F042906	MPLIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASXVXQLNKAKDFIRDITDRGILVDEILIGPTDFLASENFFEVMPNLLDIINENSPILAFVSTLIDGDIERFCGFITDNVNLDTEIEIGIATNPHKFFDEKYVQHISDMLYYIDQNLKHEVTYTFVVNIKDYGLDYKKLHDQAVNQFNTILDFIPSVSRSHKANIILETLDKFNDYFNVLSKDTTLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYDKMFKVESFDDVLPIVESQLKRAEGTECNDCPLLFSCYNRKIILLRDYLGVNRCIAPRENMLKNIHNYNEPAQTMYKWDGYSVENDKKGYRKKFLVTKDDDPELERIKDISYVK*
P_2C_Liq_3_UnCtyDRAFT_100799	P_2C_Liq_3_UnCtyDRAFT_1007996	F080057	MLNDEWKKIVADGGMGEEFTAVNTMSQYKIQVALELLEGCSYNCPGCFVKRKGNYNSQSITLFYDLAHELKDRTDIVLDDIVIGPTDFFGAENLYDIINDIRLAQAIFWMPKDNRNIQHNCSILGSLSEKDIQSKIADIEKSALATVVESWDVQIALDLKLLMSDETYRQALKDRVQTFKDSALNYEISMATNVVEGVEDIIYDAINYVRETYSTVIEILPSVVRSFHNGSKHGDKLFQWNDMLTHLSSDVNKFKNKFHFLQGDVSHKAYNYSVINIHNGKLFMSPFIYENAQIYSKDFKIPETVPHVDSIMTYKDSIVKSQIENSTNKECGSCKYLNICANRLIPHVMDTVFKGRTECILNKDVIELFDNEVYHGNSY*
P_2C_Liq_3_UnCtyDRAFT_100799	P_2C_Liq_3_UnCtyDRAFT_1007997	F052547	MGIVTNNLRAAQADKDFDLSFSEGHEIKVQFNCEVLSGCEFKCAGCFVNKKLSNIGSFERLNNAIDLFNSSGYRVSTINIGPTDLFGNNNVVELLKDETFRECLSKVTTIQFVTTLGNIDDEVIELLNSIPKAPGFMYDANIALQPPVDWNFIKERLNQLNKFTDDLNYYMVYNMGNDDEYNSKVLEMSEFVEDNFDSILTLNPSFFRAPKTKVQKHLIEKWKQYDFSDDLYPKTIIDKAQGGSLELNYTYCNERFFWTPFIYDTALIGTNEFEVKDENDIESWTEAKSFQFMKQLTYSNETINCGSCPNMMTCIDKGVLSYMEHHSLTSCVFPGVVST*
P_2C_Liq_3_UnCtyDRAFT_101043	P_2C_Liq_3_UnCtyDRAFT_1010436	F025393	MRPQYEITVPYYQQQESNEPQLNSAEDGHRYAMFVKGNDHLINGRTYCFKDEDGNYVSTFVSQYSDIIERNLEPRVKEGVLALHAKGYLTFTSCQGHADSKHRYIGVVFNNKEQKKEFIKSVDKLNCDIYWYDNAINSVERPCHEIPWWAEGGITLHIVYDDQKYNKAPQQRRRNKPYTDLELTKFWNIQTNRNYTHYECIVFSFGYPMVEKSIWERIHKWLFYKQDRVERSYNDFLSKASYLPDYLA*
P_2C_Liq_3_UnCtyDRAFT_101065	P_2C_Liq_3_UnCtyDRAFT_1010656	F012349	MPQTSEVSIEWEEKYAYWPIRSSWSKKRIWLKKYWEGNIYFDAMGRPPIKEKSWKLIYSQNEYLMMLLREDAKYQHPLAFKSTRV*
P_2C_Liq_3_UnCtyDRAFT_101160	P_2C_Liq_3_UnCtyDRAFT_1011603	F096901	MWTLWIVSTVIGSTEPKLTRYSEYETAMSCYVEQAIQEVHFTQGETAFCEEG*
P_2C_Liq_3_UnCtyDRAFT_101174	P_2C_Liq_3_UnCtyDRAFT_1011743	F009597	MYAIMVCLDGKDDWIYVTENTNKCDMWNLKVKTYEDAEEAMEVAKTFQLPDKPENVMVVSYYED*
P_2C_Liq_3_UnCtyDRAFT_101174	P_2C_Liq_3_UnCtyDRAFT_1011747	F024076	MSKKITFEESLGDNDWGLIIDKNGRLKGLFIPEGSDEDDVPESIIQVCCNQFGINPEEFYGDSDELPRMLH*