3300000367: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL

Overview

Basic Information

• IMG/M Taxon OID: 3300000367
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063439 | Gp0054159 | Ga0026665
• Sample Name: Alkaline soda soil microbial communities from Kulunda Steppe, Russia - 2KS_010_SOIL
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 488672021
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment → Alkaline Sediment Microbial Communities From Soda Lakes And Soda Solonchak Soils

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Russia: Kulunda Steppe
• Coordinates
  • Lat. (^o): 52.1
  • Long. (^o): 79.14
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001230	Metagenome / Metatranscriptome	741	Y
F003605	Metagenome / Metatranscriptome	477	Y
F009686	Metagenome / Metatranscriptome	314	Y
F015517	Metagenome / Metatranscriptome	254	Y
F021781	Metagenome / Metatranscriptome	217	Y
F036417	Metagenome / Metatranscriptome	170	Y
F043952	Metagenome / Metatranscriptome	155	N
F085746	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SS_2KS_010_SOILDRAFT_10014253	All Organisms → cellular organisms → Bacteria	3445
SS_2KS_010_SOILDRAFT_10015556	All Organisms → cellular organisms → Bacteria	3271
SS_2KS_010_SOILDRAFT_10020178	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2762
SS_2KS_010_SOILDRAFT_10034209	Not Available	1935
SS_2KS_010_SOILDRAFT_10064401	All Organisms → Viruses → Predicted Viral	1186
SS_2KS_010_SOILDRAFT_10073341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1067
SS_2KS_010_SOILDRAFT_10090363	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	903
SS_2KS_010_SOILDRAFT_10111291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768
SS_2KS_010_SOILDRAFT_10163635	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	582
SS_2KS_010_SOILDRAFT_10196387	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
SS_2KS_010_SOILDRAFT_10014253	SS_2KS_010_SOILDRAFT_100142532	F036417	MVYYARTPLRFFIPTVLVRLMTEDGEVAFRARWKSRPIELQRCILFKLRRGQPLWFEDEAGRNLCFKPERVWAAMVDGR*
SS_2KS_010_SOILDRAFT_10015556	SS_2KS_010_SOILDRAFT_100155563	F036417	MVYFARVPIRTMIPTVLVQLATDDGDIMFRARWKRSPLELQRLILFRMRRGKPLWFEDDRGHDLCFRPEAVRAALVDGRR*
SS_2KS_010_SOILDRAFT_10020178	SS_2KS_010_SOILDRAFT_100201784	F003605	MAIGDDASSAGFPLVPDTGEEGRKRWGAREINRTRDLVAQVKNLIPNSKNTYRAAAGITYSSSAPSGGDNGDIHHRVLLGTVTTYVRH
SS_2KS_010_SOILDRAFT_10034209	SS_2KS_010_SOILDRAFT_100342094	F009686	MNERQMFEKSFERPSNFFELSPEEQWAIDKDLGILDWEGRDLTPEDRKRFFAHYITE*
SS_2KS_010_SOILDRAFT_10064401	SS_2KS_010_SOILDRAFT_100644012	F003605	MAIGDDATAAGFPLVPDTGEEGRKRWGGREINRTRDFVAQVRNLVPVGRTAYRTASGISSGTEEPTGGSNGDLYFRIVGGNVVPYVRHNNAWVGG*
SS_2KS_010_SOILDRAFT_10073341	SS_2KS_010_SOILDRAFT_100733413	F001230	PSASASGAEPVAATANEAIRNAHEWFEHNSGWAPPDPDTLHEWVSDGVCRCPDECLVAPAAWCEHGLASWALILADLD*
SS_2KS_010_SOILDRAFT_10090363	SS_2KS_010_SOILDRAFT_100903631	F021781	MGLAKYRKVYGKNGSGRFVVSEGIAPSEYLLPHEDLPTLYTDLEDDRFEIVITKGTILGVVTDDNG
SS_2KS_010_SOILDRAFT_10111291	SS_2KS_010_SOILDRAFT_101112912	F015517	MYWRSIREADLPECLALQPACMGDSIVGREAALRAWQRLLDSPAFQASVIESEHLVAGHRIVACGLGVFVDRAFVDRELASPRPDLNSRIIASIVSGESVVLSREAIAVGNAGDGLDFVNLYGTWRDGVMDDDALAQVHSLLGTSFVENISGYRFNRVLKEAIGRPRIELARATGTYRLVAEFPERDSALAVVTPESARAAPYSYAA
SS_2KS_010_SOILDRAFT_10163635	SS_2KS_010_SOILDRAFT_101636352	F043952	VGKVIAVEKFAENFDDGLLSYMQLPKDPGAVKEVYSLTKEGPYSGQLGIRANLDVTNVVGAVRVNLTL*
SS_2KS_010_SOILDRAFT_10196387	SS_2KS_010_SOILDRAFT_101963871	F085746	NFDDGLLSYMQLPSDPGAVKHVYELTKEGNYQGRLGIRANLDVENVLGAVRVNLTL*