3300000359: Human fecal microbial communities from Cork, Ireland - EM204

Overview

Basic Information

• IMG/M Taxon OID: 3300000359
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0054124 | Ga0011435
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM204
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82498706
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD335	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F047125	Metagenome / Metatranscriptome	150	N
F057001	Metagenome	137	Y
F076190	Metagenome	118	Y
F077320	Metagenome	117	N
F078004	Metagenome	117	N
F080673	Metagenome	115	N
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM204_1007711	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2372
EM204_1009254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1144
EM204_1013653	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	120343
EM204_1013956	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2156
EM204_1014178	All Organisms → cellular organisms → Bacteria	2740
EM204_1015197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium MD335	5476
EM204_1016543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	903
EM204_1017481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1011
EM204_1025132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1253

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM204_1001452	EM204_100145229	F078004	MIRHTLIITVIDALYRLTVDADRMAWMSQGAAERIPPLSLLRKAFTAGSVTVAGVLATHHDVSLAAQTVLIIGTIFHNAF*
EM204_1007711	EM204_10077113	F057001	MTSKELNKVQKEVKKASEKTLTGAVKAWCQLFKSGKDINEILKDNDIKVDKAVVPALVSLAKDKEVVIQLCKEILPRVNNTFCAYKEVEREYYDKQDQANNSKLPLDKVNSIAVLGNTHKRFGYCEPVAYSDTDSVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNDR*
EM204_1009254	EM204_10092542	F087213	MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV*
EM204_1013653	EM204_1013653116	F099451	MEIKNVGQLRKIIENLPDDFEIEMRVRRKLTDEELKNCRYPYPYDTEYLILEFDDIGVSNKVLCLGVTSNG*
EM204_1013956	EM204_10139561	F080673	MKLQDEALLYLRDNITKGEAYYILTTDKEMIEILISDKKDGSKRIKILDMEYTIERDDMLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKRRVILDLTGHRVDRNDRDKIDFMFVYYMARLCV*
EM204_1014178	EM204_10141782	F082715	KCALSLLISAMLLLGCFALAEEAPLLPIAIVPYDLTDEATTAALSALIEPKENALTRWERVVLSDGREAWVICQFDQATMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG*
EM204_1015197	EM204_10151977	F076190	VTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNDLKFVKIRVEKPQNNSLYPYFQREPL*
EM204_1016543	EM204_10165432	F026489	SDFDALEPRKRGCSPLLTPKRRAPPEKTEDSRLFGVKIF*
EM204_1017481	EM204_10174811	F077320	MKRKGMHRRRKLVLLAVSLIMVGIAVWRIWQTPRPTVMHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLSYIRDYSASGHYQIVWEDVSAEAAEAYLTALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTCAEEPTATPLPEWLADW*
EM204_1025132	EM204_10251322	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGW