3300000353: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A

Overview

Basic Information

• IMG/M Taxon OID: 3300000353
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0054045 | Ga0026171
• Sample Name: Hot spring microbial communities from Elkhorn Slough, Monterey Bay, USA - MD6A
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178522206
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline Mat → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Elkhorn Slough, Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.82188
  • Long. (^o): -121.744
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011397	Metagenome / Metatranscriptome	291	Y
F022996	Metagenome	212	Y
F036294	Metagenome / Metatranscriptome	170	Y
F082762	Metagenome / Metatranscriptome	113	Y
F082899	Metagenome / Metatranscriptome	113	Y
F102160	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ElkS_mat_MD6ADRAFT_1000012	Not Available	50233
ElkS_mat_MD6ADRAFT_1000032	Not Available	41560
ElkS_mat_MD6ADRAFT_1012526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2098
ElkS_mat_MD6ADRAFT_1015579	All Organisms → cellular organisms → Eukaryota	1738
ElkS_mat_MD6ADRAFT_1024203	All Organisms → cellular organisms → Bacteria	1144

Sequences

Scaffold ID	Protein ID	Family	Sequence
ElkS_mat_MD6ADRAFT_1000012	ElkS_mat_MD6ADRAFT_100001281	F022996	METKIITNIAKMKADIKVKAEEQKFLKNQRKDVNLVGERKMSASDATYKHQCNREELRMMYAAYGLARGKSIKQIENQHDEENHPLKQYQKTIDRIMEGYMKIVEVEPQE*
ElkS_mat_MD6ADRAFT_1000012	ElkS_mat_MD6ADRAFT_100001290	F011397	MKDFELLKRTYPVSQFDRICDGYVYICDNTSVEERKEWRINLKDLQKTIKKGEKYIYQVAKDSGMFKAMCLSFNNYRIIRKHIFGIDDE*
ElkS_mat_MD6ADRAFT_1000032	ElkS_mat_MD6ADRAFT_100003238	F102160	MILFALMVSVFISYVAYIIFKYGIQKSISESYYVLPKKLNFLFVLFTWLFAIPAMFLGNSLLMFFAGGGIVWVGANAAMHKNPTRTIHLIAAIGGMILGGLAMIFQYHMWYMTAGVAGLLPILYLVDKKHFMFWAELAVFIAITITLGVNIF*
ElkS_mat_MD6ADRAFT_1012526	ElkS_mat_MD6ADRAFT_10125263	F036294	MDRGSSDEAIVGVKPTADDDAVTYRRGKLLESDKEVGAEGRNM*
ElkS_mat_MD6ADRAFT_1015579	ElkS_mat_MD6ADRAFT_10155793	F082762	MLGLFTESLTYLFPGGRTLKLIKNGVSVTNSSNPVVLAKNITLTVVDCCAPPPLRLAAHCIAAGATIAASIAAPNPVTLGSAVHLVTELYENC*
ElkS_mat_MD6ADRAFT_1024203	ElkS_mat_MD6ADRAFT_10242031	F082899	MSSFDEVLDQAIALLRQRRRITYRGLKRQLRIDDEFLDDIVDELIKGQRLAEDE