Sample 3300000318

Overview

Basic Information
IMG/M Taxon OID	3300000318 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063443 \| Gp0053972 \| Ga0025862
Sample Name	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	296519018
Sequencing Scaffolds	24
Novel Protein Genes	28
Associated Families	28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2
Not Available	6
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium TFI 002	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Wetland Microbial Communities From Twitchell Island In The Sacramento Delta
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland → Wetland Microbial Communities From Twitchell Island In The Sacramento Delta

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → saline wetland → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Twitchell Island in the Sacramento/San Joaquin Delta, CA
Coordinates	Lat. (^o)	38.106796	Long. (^o)	-121.646457	Alt. (m)	N/A	Depth (m)	0 to .12
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000109	Metagenome / Metatranscriptome	2202	Y
F000233	Metagenome / Metatranscriptome	1512	Y
F002998	Metagenome / Metatranscriptome	514	Y
F003129	Metagenome / Metatranscriptome	505	Y
F006047	Metagenome	382	Y
F007018	Metagenome / Metatranscriptome	359	Y
F010231	Metagenome	306	Y
F019014	Metagenome / Metatranscriptome	232	Y
F021886	Metagenome / Metatranscriptome	217	Y
F037014	Metagenome	168	Y
F038641	Metagenome / Metatranscriptome	165	Y
F040436	Metagenome / Metatranscriptome	161	Y
F049135	Metagenome / Metatranscriptome	147	Y
F053838	Metagenome / Metatranscriptome	140	Y
F055453	Metagenome	138	Y
F062231	Metagenome	131	Y
F063932	Metagenome	129	Y
F064239	Metagenome / Metatranscriptome	129	Y
F069503	Metagenome	124	Y
F069913	Metagenome / Metatranscriptome	123	Y
F071785	Metagenome / Metatranscriptome	122	Y
F074396	Metagenome / Metatranscriptome	119	Y
F075999	Metagenome	118	Y
F076572	Metagenome	118	Y
F076659	Metagenome	118	Y
F085037	Metagenome	111	Y
F087844	Metagenome	110	N
F091042	Metagenome / Metatranscriptome	108	Y

Family

Category

Number of Sequences

3D Structure?

F000109

Metagenome / Metatranscriptome

2202

F000233

Metagenome / Metatranscriptome

1512

F002998

Metagenome / Metatranscriptome

514

F003129

Metagenome / Metatranscriptome

505

F006047

Metagenome

382

F007018

Metagenome / Metatranscriptome

359

F010231

Metagenome

306

F019014

Metagenome / Metatranscriptome

232

F021886

Metagenome / Metatranscriptome

217

F037014

Metagenome

168

F038641

Metagenome / Metatranscriptome

165

F040436

Metagenome / Metatranscriptome

161

F049135

Metagenome / Metatranscriptome

147

F053838

Metagenome / Metatranscriptome

140

F055453

Metagenome

138

F062231

Metagenome

131

F063932

Metagenome

129

F064239

Metagenome / Metatranscriptome

129

F069503

Metagenome

124

F069913

Metagenome / Metatranscriptome

123

F071785

Metagenome / Metatranscriptome

122

F074396

Metagenome / Metatranscriptome

119

F075999

Metagenome

118

F076572

Metagenome

118

F076659

Metagenome

118

F085037

Metagenome

111

F087844

Metagenome

110

F091042

Metagenome / Metatranscriptome

108

Scaffold	Taxonomy	Length	IMG/M Link
WSSedL1CaDRAFT_10000258	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes	37165	Open in IMG/M
WSSedL1CaDRAFT_10000437	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	29623	Open in IMG/M
WSSedL1CaDRAFT_10002349	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9660	Open in IMG/M
WSSedL1CaDRAFT_10002978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8038	Open in IMG/M
WSSedL1CaDRAFT_10003727	Not Available	6733	Open in IMG/M
WSSedL1CaDRAFT_10007833	All Organisms → cellular organisms → Bacteria	3665	Open in IMG/M
WSSedL1CaDRAFT_10007842	All Organisms → cellular organisms → Bacteria	3662	Open in IMG/M
WSSedL1CaDRAFT_10007968	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium TFI 002	3607	Open in IMG/M
WSSedL1CaDRAFT_10016273	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
WSSedL1CaDRAFT_10026053	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1366	Open in IMG/M
WSSedL1CaDRAFT_10034079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1091	Open in IMG/M
WSSedL1CaDRAFT_10041260	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
WSSedL1CaDRAFT_10043054	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	911	Open in IMG/M
WSSedL1CaDRAFT_10044855	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
WSSedL1CaDRAFT_10047821	Not Available	845	Open in IMG/M
WSSedL1CaDRAFT_10048285	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
WSSedL1CaDRAFT_10058827	Not Available	736	Open in IMG/M
WSSedL1CaDRAFT_10069741	Not Available	662	Open in IMG/M
WSSedL1CaDRAFT_10069953	Not Available	661	Open in IMG/M
WSSedL1CaDRAFT_10073480	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	641	Open in IMG/M
WSSedL1CaDRAFT_10078602	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	616	Open in IMG/M
WSSedL1CaDRAFT_10091629	Not Available	563	Open in IMG/M
WSSedL1CaDRAFT_10091635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
WSSedL1CaDRAFT_10098898	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

WSSedL1CaDRAFT_10000258

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes

37165

Open in IMG/M

WSSedL1CaDRAFT_10000437

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

29623

Open in IMG/M

WSSedL1CaDRAFT_10002349

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

9660

Open in IMG/M

WSSedL1CaDRAFT_10002978

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

8038

Open in IMG/M

WSSedL1CaDRAFT_10003727

Not Available

6733

Open in IMG/M

WSSedL1CaDRAFT_10007833

All Organisms → cellular organisms → Bacteria

3665

Open in IMG/M

WSSedL1CaDRAFT_10007842

All Organisms → cellular organisms → Bacteria

3662

Open in IMG/M

WSSedL1CaDRAFT_10007968

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium TFI 002

3607

Open in IMG/M

WSSedL1CaDRAFT_10016273

All Organisms → cellular organisms → Bacteria

2026

Open in IMG/M

WSSedL1CaDRAFT_10026053

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

1366

Open in IMG/M

WSSedL1CaDRAFT_10034079

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales

1091

Open in IMG/M

WSSedL1CaDRAFT_10041260

All Organisms → cellular organisms → Bacteria

941

Open in IMG/M

WSSedL1CaDRAFT_10043054

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

911

Open in IMG/M

WSSedL1CaDRAFT_10044855

All Organisms → cellular organisms → Bacteria

884

Open in IMG/M

WSSedL1CaDRAFT_10047821

Not Available

845

Open in IMG/M

WSSedL1CaDRAFT_10048285

All Organisms → cellular organisms → Bacteria

840

Open in IMG/M

WSSedL1CaDRAFT_10058827

Not Available

736

Open in IMG/M

WSSedL1CaDRAFT_10069741

Not Available

662

Open in IMG/M

WSSedL1CaDRAFT_10069953

Not Available

661

Open in IMG/M

WSSedL1CaDRAFT_10073480

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium

641

Open in IMG/M

WSSedL1CaDRAFT_10078602

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium

616

Open in IMG/M

WSSedL1CaDRAFT_10091629

Not Available

563

Open in IMG/M

WSSedL1CaDRAFT_10091635

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

563

Open in IMG/M

WSSedL1CaDRAFT_10098898

All Organisms → cellular organisms → Bacteria

539

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
WSSedL1CaDRAFT_10000124	WSSedL1CaDRAFT_1000012445	F000109	MTSAKTPASQAKPKRRIVAPREQRTQLRLTVDSKFTRTHFQQLFAVLGIRKKNALAEHIIMAFHTKKAQDALRHFYNNQWLMIPFQSIDTAFVFPLTHEIADELEKIGGEILGGVNRSKAFRVMVEYFAYIHNLKSPVQISTE*
WSSedL1CaDRAFT_10000258	WSSedL1CaDRAFT_100002585	F087844	MRKTALLCLVTFTLLLPLSSLHAQGRNIHFFGSYDRSFGNIIASVSSSLVDIQRDEVSKLKDGSVNQFEFGAFFNSFGVGVIHNSYAADATTTYQNNDMNNDGHLENGMLGDKLRLKFTGLEVLYKKAIFDSRFDVLWRMALGIQSYSIDKTFENSENNPSDYYQTLTGSIFTGLIGAGFDYRINKIVSIGIETSVLPGKYKKLKDKNSAGYIYEDNVSRLSTGLKLTLTL*
WSSedL1CaDRAFT_10000437	WSSedL1CaDRAFT_1000043723	F076572	MKKLLICLFVVFLAIGCAKKDATAPNCEQDQTFSMEFTNGTDNPYDLYINDQFQEIMIAKSKVTYDIPAGYWSAEVVQRSGYTTSPTDKVYSNTYESCTNYYIVF*
WSSedL1CaDRAFT_10002349	WSSedL1CaDRAFT_100023492	F071785	MMISPIRQQNSELHSALRAARENENRWLEMNAEYATDSEAMEQWAATAKLRRLEVERIEALLAEPEKA*
WSSedL1CaDRAFT_10002978	WSSedL1CaDRAFT_100029782	F002998	MSVSTNRVWRQLSNEIRVAVCQVFWAECKGPEKQFMIASLAKTKNLREVFVRKSSTERLVNWTAATLALPDPMVDDLLKRYLLHAHRAVIIHFLDLLNIPHSEGMIEEDFDYATLTTEGVQAAARSLLASPDHIGAELYLQYLVLQGGPWEGIEEVLPAEA*
WSSedL1CaDRAFT_10003727	WSSedL1CaDRAFT_100037273	F007018	MRLSAGRIRSLATRYALAEAAAFPGLRTEPNGFATNRNPASDIKHGRLRFAHHI*
WSSedL1CaDRAFT_10003727	WSSedL1CaDRAFT_100037275	F003129	MPESLSITSPSAATAPVLIPRNTARVAISILLTVLDSWAVVAFGGTLYRVSAHHTTWLAGIALLFVSLFASLARTWYLALAVRPR*
WSSedL1CaDRAFT_10004011	WSSedL1CaDRAFT_100040114	F000233	MPSAVKDKSKRASALPQTRAKAPKIKFQADLAPSEDLMVRRLKAELEMASNSDFLADAVALFRWAVSERKRGHRIVSESTSGERKVLLFPRLERVAPELTLPQAEIAWTAAELENLAALATGKPAEPTEALIRAMRH*
WSSedL1CaDRAFT_10007833	WSSedL1CaDRAFT_100078336	F040436	MGELRILRPRRSLVSIPVVEAVYCESCASVSNSSGGCCGVCGNIPVWPLAELLPQPPRGPYPGSGPASSNPPILQIELLKAA*
WSSedL1CaDRAFT_10007833	WSSedL1CaDRAFT_100078337	F006047	EPMTIPSLPEWALPPGMTLAQANGLVGDTRGPVDQRLTAEIEGFRGTLGKSIYAEILRRAGHSADARTIPNAERQKQTIEKMKAAARGFERLRQLAEMAGEARFFTAAERFKIALVTELPSLAALKQLVDELESVANQQVA*
WSSedL1CaDRAFT_10007842	WSSedL1CaDRAFT_100078423	F063932	MIIQTNPQAFSNRLPVHTVTSIDRSRGIVTLSGSDGTSLDVALNSWGHLEVTQPGIGTKVQLLPDQH*
WSSedL1CaDRAFT_10007968	WSSedL1CaDRAFT_100079681	F010231	MHITHDYVHWLADVHLAVFAPAFTLSFHDSECSRKPPNAHSLGR
WSSedL1CaDRAFT_10016273	WSSedL1CaDRAFT_100162732	F091042	LRGAIISIGIWLLIQSEENLDRLRNSLRKRGLDSDNLARSALEFPDVIF*
WSSedL1CaDRAFT_10026053	WSSedL1CaDRAFT_100260531	F037014	LARIEAARAVLETWLGKPPATKGDAEWEMTPAFEHLQFAIEFCNAAEVPEDVMEAMFFRFWLWTLVLNDRLPELFFQTLDRNWELVHAQVQSHMAKYAGPRLQ*
WSSedL1CaDRAFT_10034079	WSSedL1CaDRAFT_100340793	F064239	RRRYKDWQVALVKLEYIDRIVEVEGVCKGTPPNERLGLRVPYETIKETVADYFDIAHAVDPDLAEYRNDLLEIFPRRSERSRPRGALSAARFIQQHQRMLMDKISAWIGKSDRRVVGRFLRQLQALCTYEHLLVPEAQRNEKLVDLTIVATWHVLDGIHRLSERQPGRK*
WSSedL1CaDRAFT_10041260	WSSedL1CaDRAFT_100412602	F062231	SPVTVAKGHEIPKANLPEFRDTIHYHELKRFVFVPSLTDFTSVGETLALVRLCEMFYRIDDSCSVQQSRLTNLEEIKANNVILLGGNQAWSGRVFLNIEGFHFQNGVILNSNPQQGEQTIYRPEFDPVTNQLRRDYAVVLLLPNDQQGARVLLIYGIYTQGSQAAVEFLTNSAQMAKLRTVLTAASNGKIVPKYFQVLLTTVVENSVPGNTSIVAVRTVQQ*
WSSedL1CaDRAFT_10043054	WSSedL1CaDRAFT_100430543	F069913	MTLEEYTQLEQDFSTSETDIKTFVGIKGVSIHQYYYWKRKSRDLQEATSPEGGQFLPLNIISGGFIKPGKRGKNIKQPLITQGEIEIELRTPSGAELRIRGVMDSIMVSTIITSSSVRRNV*
WSSedL1CaDRAFT_10044855	WSSedL1CaDRAFT_100448553	F055453	ILLESPTDIVARFYKEAGKDLDRYYNPDDVKYKAENAEYYKKHFKDWYKDESVPIFEKPVDKPQPEYTTKPKQGKLQSPGYRGLNYAKARAGLPYDRNVQEYKTDPYRAVASQTMDGARNNNGQ*
WSSedL1CaDRAFT_10047821	WSSedL1CaDRAFT_100478211	F038641	ARAIIDWADRDEQTFSLDANSAGPEDYRYDQRAEPYLAHNDRYDTVGETNLVRGMNADFSEAFRPYFTTYASNPDCKVNLRSLKGDCTPLIVGLVRAALIPDPTKPPQDMTILDDNKIYPLASVLCERGAAVGFGSLDTVISVLTNPAASLSKDDPRFQMMQNLTGITITKQQLQQVATTDPPRVYRVVATGESGKVKKRITAILDVKRQMENPVTSDPASEQASGVIQYWREE*
WSSedL1CaDRAFT_10048285	WSSedL1CaDRAFT_100482852	F076659	RDSRYLPAFVNRLIKAVFWAPSSDPVHPPNAITYYLQHETMSAPTVDRFVESVKRQCQPGERIFGEYSLGPFAAALGPCVLGANLADTNPHRWKVHESTPQEWVRALEDDHLAIAIVTSGAGMLKERAIREYFYGTFPRVVETWDDPYMGHVELRRRAQ*
WSSedL1CaDRAFT_10058827	WSSedL1CaDRAFT_100588271	F085037	GTPAATNAATMPTQVTAPTLRDAKAVLADYATAIGDEKLWKNHKCVRVKREVAVKAMQFVSQEQTRVCKGSKILGESQMPGMGLFRRGSDGRTAWAEDPIGGLRILKDAEAEDVQIGAAWNSEWHLGEVYAKIVSVPPPKAAPADRSLECVGLDKKKGQPTTLCFDGASHLRVWEQGVQASQGGLVPYVTRFSDWRPVDGVKVWHHEVVTVGPVTMEGQIVELKFDEPMSPSLFALPRKK
WSSedL1CaDRAFT_10069741	WSSedL1CaDRAFT_100697411	F075999	GLVQRPFPGRASVVEYPRALAEPDPRNHDKETSMLKLQTYAAATALLSLLLLAPSVRADSDVKPKYYFKLTSVHAEDKSIIPLVSEXLKQEVDSRPEFTTDIGTAESEDAQIAEIRRQGMQGYQVSMRIESFKKEIKPPAPGKKDQQMAISVKLTIFGHTIPGQKMMFTGDGDASLMGEFSERLKDKEEERFSRTALASAIKQAVSTAVAKLTNATLPSG
WSSedL1CaDRAFT_10069953	WSSedL1CaDRAFT_100699532	F069503	MDXTPLTMEXRPLHRGAYTQITLKGPVATVPQALEVRRLMSLLWLWHGGPVDVVLCVDGTNSGACWLEVWEDVLGRVPGHRLDMRYLIISHNTLAAGAGHER*
WSSedL1CaDRAFT_10073480	WSSedL1CaDRAFT_100734802	F074396	MGRFKVRLMYSNGKPASDVGVMIDYGILNGTDEKRTHSDGWVEFHNHGDKSGYIWVLGHKMGLHSLADGKTYSFTI*
WSSedL1CaDRAFT_10078602	WSSedL1CaDRAFT_100786021	F049135	VTEFNHIHVREGEEWICGRTVAFEDQELLRCEARELDEEDACRECAMQLLAHFGDAMHVQ
WSSedL1CaDRAFT_10091629	WSSedL1CaDRAFT_100916293	F053838	FGASAKPAGRALFFLGVKRNFTTAPAGDMGELVHLSH*
WSSedL1CaDRAFT_10091635	WSSedL1CaDRAFT_100916352	F021886	MSWETIRNLIHDEWAILSLLLVWSVAGLAVICERVYALWNVLPKSEVFKNRVIDAVSAGDLAKAAALCETGSDPLGEVFGRGLRVYAKTPHKTTETVN
WSSedL1CaDRAFT_10098898	WSSedL1CaDRAFT_100988982	F019014	APATALFAAGGKKTPVIVEVALLDIDITQYAVQYEWLRSQVIGPVGNLTRGVGLALLLNEGMPGWLKTVETVLRATPAPRAADVQGPALHQDSTQASATPAWLSSARHKVTTLLASLVLSTRPTVPQFSREGYRSW*

Scaffold ID

Protein ID

Family

Sequence

WSSedL1CaDRAFT_10000124

WSSedL1CaDRAFT_1000012445

F000109

MTSAKTPASQAKPKRRIVAPREQRTQLRLTVDSKFTRTHFQQLFAVLGIRKKNALAEHIIMAFHTKKAQDALRHFYNNQWLMIPFQSIDTAFVFPLTHEIADELEKIGGEILGGVNRSKAFRVMVEYFAYIHNLKSPVQISTE*

WSSedL1CaDRAFT_10000258

WSSedL1CaDRAFT_100002585

F087844

MRKTALLCLVTFTLLLPLSSLHAQGRNIHFFGSYDRSFGNIIASVSSSLVDIQRDEVSKLKDGSVNQFEFGAFFNSFGVGVIHNSYAADATTTYQNNDMNNDGHLENGMLGDKLRLKFTGLEVLYKKAIFDSRFDVLWRMALGIQSYSIDKTFENSENNPSDYYQTLTGSIFTGLIGAGFDYRINKIVSIGIETSVLPGKYKKLKDKNSAGYIYEDNVSRLSTGLKLTLTL*

WSSedL1CaDRAFT_10000437

WSSedL1CaDRAFT_1000043723

F076572

MKKLLICLFVVFLAIGCAKKDATAPNCEQDQTFSMEFTNGTDNPYDLYINDQFQEIMIAKSKVTYDIPAGYWSAEVVQRSGYTTSPTDKVYSNTYESCTNYYIVF*

WSSedL1CaDRAFT_10002349

WSSedL1CaDRAFT_100023492

F071785

MMISPIRQQNSELHSALRAARENENRWLEMNAEYATDSEAMEQWAATAKLRRLEVERIEALLAEPEKA*

WSSedL1CaDRAFT_10002978

WSSedL1CaDRAFT_100029782

F002998

MSVSTNRVWRQLSNEIRVAVCQVFWAECKGPEKQFMIASLAKTKNLREVFVRKSSTERLVNWTAATLALPDPMVDDLLKRYLLHAHRAVIIHFLDLLNIPHSEGMIEEDFDYATLTTEGVQAAARSLLASPDHIGAELYLQYLVLQGGPWEGIEEVLPAEA*

WSSedL1CaDRAFT_10003727

WSSedL1CaDRAFT_100037273

F007018

MRLSAGRIRSLATRYALAEAAAFPGLRTEPNGFATNRNPASDIKHGRLRFAHHI*

WSSedL1CaDRAFT_10003727

WSSedL1CaDRAFT_100037275

F003129

MPESLSITSPSAATAPVLIPRNTARVAISILLTVLDSWAVVAFGGTLYRVSAHHTTWLAGIALLFVSLFASLARTWYLALAVRPR*

WSSedL1CaDRAFT_10004011

WSSedL1CaDRAFT_100040114

F000233

MPSAVKDKSKRASALPQTRAKAPKIKFQADLAPSEDLMVRRLKAELEMASNSDFLADAVALFRWAVSERKRGHRIVSESTSGERKVLLFPRLERVAPELTLPQAEIAWTAAELENLAALATGKPAEPTEALIRAMRH*

WSSedL1CaDRAFT_10007833

WSSedL1CaDRAFT_100078336

F040436

MGELRILRPRRSLVSIPVVEAVYCESCASVSNSSGGCCGVCGNIPVWPLAELLPQPPRGPYPGSGPASSNPPILQIELLKAA*

WSSedL1CaDRAFT_10007833

WSSedL1CaDRAFT_100078337

F006047

EPMTIPSLPEWALPPGMTLAQANGLVGDTRGPVDQRLTAEIEGFRGTLGKSIYAEILRRAGHSADARTIPNAERQKQTIEKMKAAARGFERLRQLAEMAGEARFFTAAERFKIALVTELPSLAALKQLVDELESVANQQVA*

WSSedL1CaDRAFT_10007842

WSSedL1CaDRAFT_100078423

F063932

MIIQTNPQAFSNRLPVHTVTSIDRSRGIVTLSGSDGTSLDVALNSWGHLEVTQPGIGTKVQLLPDQH*

WSSedL1CaDRAFT_10007968

WSSedL1CaDRAFT_100079681

F010231

MHITHDYVHWLADVHLAVFAPAFTLSFHDSECSRKPPNAHSLGR

WSSedL1CaDRAFT_10016273

WSSedL1CaDRAFT_100162732

F091042

LRGAIISIGIWLLIQSEENLDRLRNSLRKRGLDSDNLARSALEFPDVIF*

WSSedL1CaDRAFT_10026053

WSSedL1CaDRAFT_100260531

F037014

LARIEAARAVLETWLGKPPATKGDAEWEMTPAFEHLQFAIEFCNAAEVPEDVMEAMFFRFWLWTLVLNDRLPELFFQTLDRNWELVHAQVQSHMAKYAGPRLQ*

WSSedL1CaDRAFT_10034079

WSSedL1CaDRAFT_100340793

F064239

RRRYKDWQVALVKLEYIDRIVEVEGVCKGTPPNERLGLRVPYETIKETVADYFDIAHAVDPDLAEYRNDLLEIFPRRSERSRPRGALSAARFIQQHQRMLMDKISAWIGKSDRRVVGRFLRQLQALCTYEHLLVPEAQRNEKLVDLTIVATWHVLDGIHRLSERQPGRK*

WSSedL1CaDRAFT_10041260

WSSedL1CaDRAFT_100412602

F062231

SPVTVAKGHEIPKANLPEFRDTIHYHELKRFVFVPSLTDFTSVGETLALVRLCEMFYRIDDSCSVQQSRLTNLEEIKANNVILLGGNQAWSGRVFLNIEGFHFQNGVILNSNPQQGEQTIYRPEFDPVTNQLRRDYAVVLLLPNDQQGARVLLIYGIYTQGSQAAVEFLTNSAQMAKLRTVLTAASNGKIVPKYFQVLLTTVVENSVPGNTSIVAVRTVQQ*

WSSedL1CaDRAFT_10043054

WSSedL1CaDRAFT_100430543

F069913

MTLEEYTQLEQDFSTSETDIKTFVGIKGVSIHQYYYWKRKSRDLQEATSPEGGQFLPLNIISGGFIKPGKRGKNIKQPLITQGEIEIELRTPSGAELRIRGVMDSIMVSTIITSSSVRRNV*

WSSedL1CaDRAFT_10044855

WSSedL1CaDRAFT_100448553

F055453

ILLESPTDIVARFYKEAGKDLDRYYNPDDVKYKAENAEYYKKHFKDWYKDESVPIFEKPVDKPQPEYTTKPKQGKLQSPGYRGLNYAKARAGLPYDRNVQEYKTDPYRAVASQTMDGARNNNGQ*

WSSedL1CaDRAFT_10047821

WSSedL1CaDRAFT_100478211

F038641

ARAIIDWADRDEQTFSLDANSAGPEDYRYDQRAEPYLAHNDRYDTVGETNLVRGMNADFSEAFRPYFTTYASNPDCKVNLRSLKGDCTPLIVGLVRAALIPDPTKPPQDMTILDDNKIYPLASVLCERGAAVGFGSLDTVISVLTNPAASLSKDDPRFQMMQNLTGITITKQQLQQVATTDPPRVYRVVATGESGKVKKRITAILDVKRQMENPVTSDPASEQASGVIQYWREE*

WSSedL1CaDRAFT_10048285

WSSedL1CaDRAFT_100482852

F076659

RDSRYLPAFVNRLIKAVFWAPSSDPVHPPNAITYYLQHETMSAPTVDRFVESVKRQCQPGERIFGEYSLGPFAAALGPCVLGANLADTNPHRWKVHESTPQEWVRALEDDHLAIAIVTSGAGMLKERAIREYFYGTFPRVVETWDDPYMGHVELRRRAQ*

WSSedL1CaDRAFT_10058827

WSSedL1CaDRAFT_100588271

F085037

GTPAATNAATMPTQVTAPTLRDAKAVLADYATAIGDEKLWKNHKCVRVKREVAVKAMQFVSQEQTRVCKGSKILGESQMPGMGLFRRGSDGRTAWAEDPIGGLRILKDAEAEDVQIGAAWNSEWHLGEVYAKIVSVPPPKAAPADRSLECVGLDKKKGQPTTLCFDGASHLRVWEQGVQASQGGLVPYVTRFSDWRPVDGVKVWHHEVVTVGPVTMEGQIVELKFDEPMSPSLFALPRKK

WSSedL1CaDRAFT_10069741

WSSedL1CaDRAFT_100697411

F075999

GLVQRPFPGRASVVEYPRALAEPDPRNHDKETSMLKLQTYAAATALLSLLLLAPSVRADSDVKPKYYFKLTSVHAEDKSIIPLVSEXLKQEVDSRPEFTTDIGTAESEDAQIAEIRRQGMQGYQVSMRIESFKKEIKPPAPGKKDQQMAISVKLTIFGHTIPGQKMMFTGDGDASLMGEFSERLKDKEEERFSRTALASAIKQAVSTAVAKLTNATLPSG

WSSedL1CaDRAFT_10069953

WSSedL1CaDRAFT_100699532

F069503

MDXTPLTMEXRPLHRGAYTQITLKGPVATVPQALEVRRLMSLLWLWHGGPVDVVLCVDGTNSGACWLEVWEDVLGRVPGHRLDMRYLIISHNTLAAGAGHER*

WSSedL1CaDRAFT_10073480

WSSedL1CaDRAFT_100734802

F074396

MGRFKVRLMYSNGKPASDVGVMIDYGILNGTDEKRTHSDGWVEFHNHGDKSGYIWVLGHKMGLHSLADGKTYSFTI*

WSSedL1CaDRAFT_10078602

WSSedL1CaDRAFT_100786021

F049135

VTEFNHIHVREGEEWICGRTVAFEDQELLRCEARELDEEDACRECAMQLLAHFGDAMHVQ

WSSedL1CaDRAFT_10091629

WSSedL1CaDRAFT_100916293

F053838

FGASAKPAGRALFFLGVKRNFTTAPAGDMGELVHLSH*

WSSedL1CaDRAFT_10091635

WSSedL1CaDRAFT_100916352

F021886

MSWETIRNLIHDEWAILSLLLVWSVAGLAVICERVYALWNVLPKSEVFKNRVIDAVSAGDLAKAAALCETGSDPLGEVFGRGLRVYAKTPHKTTETVN

WSSedL1CaDRAFT_10098898

WSSedL1CaDRAFT_100988982

F019014

APATALFAAGGKKTPVIVEVALLDIDITQYAVQYEWLRSQVIGPVGNLTRGVGLALLLNEGMPGWLKTVETVLRATPAPRAADVQGPALHQDSTQASATPAWLSSARHKVTTLLASLVLSTRPTVPQFSREGYRSW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000318: Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site L1 Cattail

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences