3300000291: Human fecal microbial communities from Cork, Ireland - EM293

Overview

Basic Information

• IMG/M Taxon OID: 3300000291
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053768 | Ga0011203
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM293
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 59577797
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F056623	Metagenome	137	N
F057385	Metagenome	136	N
F070133	Metagenome	123	N
F073656	Metagenome	120	N
F089053	Metagenome	109	Y
F101193	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM293_1000425	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	7557
EM293_1003468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1018
EM293_1010092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5677
EM293_1010733	All Organisms → cellular organisms → Bacteria	3996
EM293_1012259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2078
EM293_1012517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	556
EM293_1017560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	2831
EM293_1018591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1525

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM293_1000425	EM293_10004258	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRCCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTVGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRNGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
EM293_1003468	EM293_10034682	F102166	IMEETWRISPEMRVFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV*
EM293_1010092	EM293_10100929	F070133	YSVTHTPNGSFVVIYFTEGEKSELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLTLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE*
EM293_1010733	EM293_10107335	F056623	MKSTEEMLQAAVQQLQTAEQARLTSETDPARRQLLHLLYAREAAALQSMTLVRAEIPATQKRDWKPLIFPLAAALLNLGALALWLTLPNCVTPENSGWMGRFALCIVVQSVSLCAAIGSIVSAMRRKPPKPVAVADEPEFRRRLVEVEGRIALDAQTIEALFAQESVTIISTGAETAAELYASLYEMAQDARLDGDANQEKALSWPLSNAKRLLHAVGCEAVDYTPETAMFYDVMDADITQQRRPAIVQKADGIVQQRGLYLRKG*
EM293_1012259	EM293_10122593	F101193	MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLMPIEFVIFVVCIFFRNSMNDAIGWLAAWLLFVLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH*
EM293_1012517	EM293_10125172	F089053	MEGPRPDKFAFGVRIGRVVDGCRPAKGCIRKWLYIFANGQLKLSTAKEATVKNMEVSL*
EM293_1017560	EM293_10175605	F057385	GYQQGDEAGFDLNLSGKSVLGMASLTTAAEENQLMYVSSALLGGVIAVNSKDVEAIKEKALRATMKMSGQSDEEIDKAIEESKEQLSGNAEYTALMEAAANLSSMTEEQLMEELTQADTTAFMTMMNEILSGAEMAEVTEQPGDCDAAKNYVKVTVPPEKLAEMTKALLEMIHSVPSIGAYMDALFSAADTSWDDLLKELDEADLYADDIVYEYWMTEAGELVRMTASVKINNGGEEPLPMSFTMTRNTADGVATWLVTIKSAEDTAATLTFAGDLENFTANLTAYAGEDSVEINVSGKGVGTDSSVVDVEIKETVDGVEQGFGVVVTTATTMDGEQGVRKVDVLVRFMGLDVVTITAETRTCDAKDALDVSKAQDLGAMTDSEFQTWFVKVMNNLQNLPMTLLMSLPESMLTLLMGGSN
EM293_1018591	EM293_10185911	F026489	DALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*