3300000289: Human fecal microbial communities from Cork, Ireland - EM283

Overview

Basic Information

• IMG/M Taxon OID: 3300000289
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045762 | Gp0053766 | Ga0010787
• Sample Name: Human fecal microbial communities from Cork, Ireland - EM283
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI), Macrogen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118765155
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Cork, Ireland
• Coordinates
  • Lat. (^o): 51.907
  • Long. (^o): -8.472
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F051936	Metagenome	143	N
F059106	Metagenome	134	N
F068941	Metagenome	124	N
F073656	Metagenome	120	N
F081354	Metagenome	114	Y
F087334	Metagenome	110	N
F090513	Metagenome	108	N
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
EM283_1001975	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii	7264
EM283_1002199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	6302
EM283_1004036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2366
EM283_1004952	Not Available	2144
EM283_1008351	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3243
EM283_1013159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1434
EM283_1024862	Not Available	777
EM283_1028356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1716
EM283_1043863	All Organisms → Viruses → Predicted Viral	3717
EM283_1050436	All Organisms → cellular organisms → Bacteria	4710
EM283_1063991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9871
EM283_1068291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3692

Sequences

Scaffold ID	Protein ID	Family	Sequence
EM283_1001975	EM283_10019757	F073656	MTMEQDQEQMQGALYVAVDDGNKIIAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRCCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIRTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGTEFHLKRH*
EM283_1002199	EM283_10021993	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDIIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
EM283_1004036	EM283_10040361	F044554	CCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
EM283_1004952	EM283_10049521	F090513	MLKIFAIAKYVRKMEWKLLHIKHILYRQPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT*
EM283_1008351	EM283_10083512	F087334	MASRYQFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ*
EM283_1013159	EM283_10131592	F081354	LVRQNQQSSAHNFVKDFSPIFLKTSRRSPLKKGAVTEIPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR*
EM283_1024862	EM283_10248621	F051936	FPLALRGKAFGFSVLQEHTVMTPVISIFFATLIIRYLSIHISIKK*
EM283_1028356	EM283_10283561	F059106	MHAIVWKIRVILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV*
EM283_1043863	EM283_10438634	F068941	MKNNKGLIIGMIGLIILMIGGTYAYYKWNSTSNINISVGIEGSTVTFNGGSNVTGILIPTSSKEEGIKKDITVIASEAGSTMSLYMDLTTMPSELKEESFVYELYYNDTTLVTKGNFKDITYASSGVTTLTLFTDRVVNTTTDKYTLYLWFNGKDYTNPNTMQNKTLSFDLYATGKNATLNG*
EM283_1050436	EM283_10504361	F081354	LVRENQQSSAHNFVKDFSSIFPKSRRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNTLR*
EM283_1063991	EM283_106399120	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
EM283_1068291	EM283_10682918	F092227	MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV*