| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000278 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045762 | Gp0054127 | Ga0011194 |
| Sample Name | Human fecal microbial communities from Cork, Ireland - EM209 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Beijing Genomics Institute (BGI), Macrogen |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 129107158 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 21 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 1 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal distal gut |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cork, Ireland | |||||||
| Coordinates | Lat. (o) | 51.907 | Long. (o) | -8.472 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013656 | Metagenome | 269 | Y |
| F026489 | Metagenome | 197 | N |
| F039198 | Metagenome | 164 | Y |
| F056309 | Metagenome | 137 | N |
| F059106 | Metagenome | 134 | N |
| F066905 | Metagenome | 126 | Y |
| F068855 | Metagenome | 124 | N |
| F072366 | Metagenome | 121 | N |
| F074964 | Metagenome | 119 | N |
| F078822 | Metagenome | 116 | N |
| F082887 | Metagenome / Metatranscriptome | 113 | Y |
| F088914 | Metagenome | 109 | N |
| F089054 | Metagenome | 109 | N |
| F090484 | Metagenome | 108 | N |
| F090514 | Metagenome | 108 | N |
| F098313 | Metagenome | 104 | N |
| F099406 | Metagenome | 103 | N |
| F101193 | Metagenome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| EM209_1000474 | All Organisms → cellular organisms → Bacteria | 19270 | Open in IMG/M |
| EM209_1002197 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus | 2175 | Open in IMG/M |
| EM209_1003348 | All Organisms → cellular organisms → Bacteria | 6316 | Open in IMG/M |
| EM209_1005055 | Not Available | 5413 | Open in IMG/M |
| EM209_1005733 | All Organisms → cellular organisms → Bacteria | 12845 | Open in IMG/M |
| EM209_1008505 | Not Available | 1370 | Open in IMG/M |
| EM209_1016408 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae | 4817 | Open in IMG/M |
| EM209_1020839 | Not Available | 610 | Open in IMG/M |
| EM209_1025398 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 2554 | Open in IMG/M |
| EM209_1027068 | All Organisms → cellular organisms → Bacteria | 4836 | Open in IMG/M |
| EM209_1032393 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158 | 3548 | Open in IMG/M |
| EM209_1047592 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 1913 | Open in IMG/M |
| EM209_1049772 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 526 | Open in IMG/M |
| EM209_1051159 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 919 | Open in IMG/M |
| EM209_1051885 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii | 2355 | Open in IMG/M |
| EM209_1069384 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia intestinalis | 1143 | Open in IMG/M |
| EM209_1069507 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 6282 | Open in IMG/M |
| EM209_1069637 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales | 538 | Open in IMG/M |
| EM209_1080004 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74 | 862 | Open in IMG/M |
| EM209_1082647 | All Organisms → cellular organisms → Bacteria | 2638 | Open in IMG/M |
| EM209_1091305 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium | 2890 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| EM209_1000474 | EM209_10004743 | F082887 | MEKIKTIAKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISNREKK* |
| EM209_1002197 | EM209_10021973 | F074964 | MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGSDLKAVCKSLEIPLEYATKVAALAKDKKRLVTVCNQMLPKVGDTFIKFTLYSKVYKDNKVDKEKGIEAKAADWCADNVVYGSEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSIRTVAKCVSEYLAHESNQQ* |
| EM209_1003348 | EM209_10033485 | F090484 | MKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGLADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVENDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL* |
| EM209_1005055 | EM209_10050552 | F099406 | MAEVGYNSKFEGLEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDNVASTETKNVYNEYILVTEDGGGKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDEGSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDNVVVPKNSFIELSIWYINDKLVIRVGEQA* |
| EM209_1005733 | EM209_10057334 | F013656 | MEKKIYKEANNFETETNINVLYKEQIISVYTNKVDLQRKLNKVLGKPTREYKIKRSISGSVWEIPFTDKVKIRNLMLKCNIFEL* |
| EM209_1008505 | EM209_10085052 | F082887 | MEKLKKIAKYTTNILAIISALVAGINAVDGITIPYAIQIVQIIAVIQGVIGTYLLGQKVVTNKEDK* |
| EM209_1016408 | EM209_10164084 | F013656 | MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKTKIQKIILKANIYDM* |
| EM209_1020839 | EM209_10208391 | F088914 | VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDSLFSVPYTPKENRKNPGKFIVFSAWYAAKALEMDVK* |
| EM209_1025398 | EM209_10253982 | F039198 | MKLTIAEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC* |
| EM209_1027068 | EM209_10270684 | F098313 | MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFLNLVRDKGDDRAFKLLWNFQSENKMTMRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN* |
| EM209_1032393 | EM209_10323936 | F068855 | VPTVEAQGPQVRKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGTVW* |
| EM209_1047592 | EM209_10475925 | F072366 | MLDILTIKADVYQLERQGKRLPVYRYLREVWQKEPPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEAENEYDLYQDFLLDVISWGLQKYRAKKRFLWQICYYVNAWATFYYIFGREITQENVEQWKKTLFEEAKERYPNSLLFEFIPHAAQLDYVWFYRLTDEQQLQIRLEVGEWNLQKN |
| EM209_1049772 | EM209_10497721 | F090514 | MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLA* |
| EM209_1051159 | EM209_10511592 | F039198 | MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKQEKYSVAIFVSGKKNYPEILEKIITKQVELDKNVC* |
| EM209_1051885 | EM209_10518851 | F026489 | SLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF* |
| EM209_1069384 | EM209_10693843 | F059106 | VILLQIFVWIVDLKVRERLTEYLKKDIKYHQVIIEVLV* |
| EM209_1069507 | EM209_106950714 | F066905 | GCGRNNGCGCLGNLFGGCGCGDSSILFFIIIFLLLFCNCGGNR* |
| EM209_1069637 | EM209_10696372 | F056309 | LSVVPLLLGDSDSLSVSYGMEPEQEALSIVSFKD* |
| EM209_1080004 | EM209_10800043 | F078822 | LFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL* |
| EM209_1082647 | EM209_10826475 | F089054 | MLTKGKFLVSFEVPGHTKDYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLSDITIIDIISLP* |
| EM209_1091305 | EM209_10913055 | F101193 | MARKCTEYHYFQHTYWDAMARYNWTRCPHCGKLCKPSRFKAATVLMPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVRFFMPYETLSEDETRKFRDLQEH* |
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