3300000271: Photobioreactor incubated microbial communities from Hamburg, Germany - Sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300000271
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0054992 | Gp0054084 | Ga0011191
• Sample Name: Photobioreactor incubated microbial communities from Hamburg, Germany - Sample 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Goettingen Genomics Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 164692310
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Photobioreactor Incubated Microbial Communities From Hamburg, Germany
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Microbial Enhanced Oil Recovery → Unclassified → Unclassified → Photobioreactor Incubated → Photobioreactor Incubated Microbial Communities From Hamburg, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Hamburg, Germany
• Coordinates
  • Lat. (^o): 53.560526
  • Long. (^o): 10.15
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F069784	Metagenome	123	N
F080069	Metagenome / Metatranscriptome	115	Y
F082505	Metagenome / Metatranscriptome	113	Y
F091422	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PBR_1000032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	39981
PBR_1002334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3434
PBR_1004207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4503
PBR_1016862	All Organisms → cellular organisms → Bacteria → Proteobacteria	4584
PBR_1026391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3589

Sequences

Scaffold ID	Protein ID	Family	Sequence
PBR_1000032	PBR_100003228	F001506	MNRILYEIRCKCNEEISITKKRKSTNRSEGKPLLYPNPTELTSKTFQIKYEKPLSSVAKFLLNSFQNKYLYYAIDDLLYLLNSNLSERDNLLALLYSPVLSLQNNLSINFFDIWIQEIYIHQSVKTNKFLKTNSPTFESSNYIIIKLLYRTKIPVKKQESLW*
PBR_1002334	PBR_10023343	F082505	MWPFTPRCRQAVVVFHIDQDGIARGAFFRGDADVLIIDERDPKNRIYRMTAESSVEELRRKIGRHPLGSLLEVPRDKERNQTPVLNLHWRSDGVHAG*
PBR_1004207	PBR_10042074	F080069	MKKPRGLKRKLAAIFGCTVALTAAMPAFADDVAGQWLFDTSKFAGNDCQIVGKITFMTTPVKNTYTCVFESEQICGKLNGDLYIRVRQVCTAQRVGKQVAIQSEVDKVLERRPYMPPDLAKMQYLADNFILQLSANKAEMNGEHYDEQRSLNARFWRDVELIS*
PBR_1016862	PBR_10168623	F069784	MTQSLKVTKTANRQPLTVRLDPESKKLFSEEAEKCGLEPGVAARQILELYVQRLRESGDYIQTLADFSQAMKTKTA*
PBR_1026391	PBR_10263912	F091422	MAALMWNSRTQLRSLGGERLHAKYMRGASEEMMASVRLTHAVSDDDYVAVHALATAELGPGLASLEEIKRVDSLTGASIWVIRRNDMVTGFLAPLALTEAGVAALADNTFDAANIDQKWVARLGEPLAGFYCWCYAGKDQVSRGALVLGLRTLIDKHFTDLPFFGRDSTEAGARIMRHLGFFPFDDTPHLFWRCCSLMEPVAC*