3300000234: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS09_5

Overview

Basic Information

• IMG/M Taxon OID: 3300000234
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063446 | Gp0053387 | Ga0026514
• Sample Name: Groundwater microbial communities from subsurface biofilms in sulfidic aquifier in Frasassi Gorge, Italy, sample from two redox zones- GS09_5
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 539638524
• Sequencing Scaffolds: 30
• Novel Protein Genes: 33
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Microscillaceae → Microscilla → Microscilla marina	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Leptolinea → unclassified Leptolinea → Leptolinea sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Cave Water → Groundwater → Groundwater Microbial Communities From Subsurface Biofilms In Sulfidic Aquifier In Frasassi Gorge, Italy

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → aquifer → biofilm material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Grotta Sulfurea, Talus Pool, Frasassi Caves, Italy
• Coordinates
  • Lat. (^o): 43.383333
  • Long. (^o): 12.95
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F002525	Metagenome / Metatranscriptome	552	Y
F002779	Metagenome / Metatranscriptome	530	Y
F006142	Metagenome / Metatranscriptome	380	Y
F006895	Metagenome / Metatranscriptome	362	Y
F015419	Metagenome / Metatranscriptome	255	Y
F016728	Metagenome / Metatranscriptome	245	Y
F017303	Metagenome / Metatranscriptome	241	Y
F018020	Metagenome / Metatranscriptome	237	Y
F020177	Metagenome / Metatranscriptome	225	Y
F021773	Metagenome / Metatranscriptome	217	Y
F026554	Metagenome / Metatranscriptome	197	Y
F032658	Metagenome / Metatranscriptome	179	Y
F039135	Metagenome	164	Y
F039671	Metagenome / Metatranscriptome	163	Y
F065185	Metagenome	128	Y
F085105	Metagenome	111	Y
F095532	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
TB_GS09_5DRAFT_10000764	Not Available	31843
TB_GS09_5DRAFT_10002270	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	19888
TB_GS09_5DRAFT_10003554	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15674
TB_GS09_5DRAFT_10004762	All Organisms → cellular organisms → Eukaryota	13119
TB_GS09_5DRAFT_10005479	Not Available	12016
TB_GS09_5DRAFT_10010135	Not Available	7760
TB_GS09_5DRAFT_10010934	All Organisms → cellular organisms → Bacteria	7339
TB_GS09_5DRAFT_10011023	Not Available	7291
TB_GS09_5DRAFT_10012524	Not Available	6597
TB_GS09_5DRAFT_10023955	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Microscillaceae → Microscilla → Microscilla marina	3725
TB_GS09_5DRAFT_10025145	All Organisms → cellular organisms → Bacteria	3560
TB_GS09_5DRAFT_10025712	All Organisms → cellular organisms → Bacteria → Proteobacteria	3485
TB_GS09_5DRAFT_10027441	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	3276
TB_GS09_5DRAFT_10030817	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	2936
TB_GS09_5DRAFT_10033338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Leptolinea → unclassified Leptolinea → Leptolinea sp.	2716
TB_GS09_5DRAFT_10033640	All Organisms → cellular organisms → Bacteria	2693
TB_GS09_5DRAFT_10033855	All Organisms → cellular organisms → Bacteria	2676
TB_GS09_5DRAFT_10034833	Not Available	2600
TB_GS09_5DRAFT_10039504	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2302
TB_GS09_5DRAFT_10039592	Not Available	2298
TB_GS09_5DRAFT_10063576	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1409
TB_GS09_5DRAFT_10066614	All Organisms → cellular organisms → Bacteria	1339
TB_GS09_5DRAFT_10072091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1234
TB_GS09_5DRAFT_10078630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1128
TB_GS09_5DRAFT_10083917	All Organisms → Viruses → Predicted Viral	1053
TB_GS09_5DRAFT_10090466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	979
TB_GS09_5DRAFT_10105124	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	855
TB_GS09_5DRAFT_10111589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	809
TB_GS09_5DRAFT_10116826	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium	776
TB_GS09_5DRAFT_10168732	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	556

Sequences

Scaffold ID	Protein ID	Family	Sequence
TB_GS09_5DRAFT_10000764	TB_GS09_5DRAFT_100007644	F017303	MSIIVKNSQLTNDAIAVLNTLIELDINAVTAFKLTRIIKELSSIVDDKLKMEKKIFDKWVEKDENGEPVIPKKSDGTLVEGTVNITNVEEFTKEMSELMEIENEIPFDTIQFEDLGLTTAKVKDLIKVDFLFS*
TB_GS09_5DRAFT_10002270	TB_GS09_5DRAFT_1000227013	F002045	MIVKEESKMNFFCVYCRTRKKFDKFIKVNAIKNKYIIDINKIMTEEEVDFNDDKTYLKIIIFNKIQQAIDKKKDIYYIPDFDNEFSIEKLLNLKKILGENNFNVLIFYNEFRRNPEIIDDVFSNLSKFSNSQIIRDY*
TB_GS09_5DRAFT_10002270	TB_GS09_5DRAFT_1000227020	F032658	MRKIEKFNNFNLIKEEASPRLPKSEDYWLKKGKIGKKVALYIHDDMDGMFSGIEMKKYLLNAGFTIEKYGILNYTEGWKYTTLDPKLINVVLDFANMPGDERDDMIDYYLDHHGIFTPEELEKYKSSPVQKKKTGSAYEAICQSLGVPQDSLTLDVIDMIDSAKYQDYGVDWQRLLDFNLSDIKKSDKKRLEFGAAFNQFLKRSDSKTIISVIENCPDASIYSIFNVMKKVYPEHNQIMTGYRKGQKKDFIEDSKWRLGEMQKRTRGLNPDEKVTFTSQSDFIQKFKKGNLIRVDGYQKIGDLVFVPTGTWANALRARTIVERDFMDGKIDSEPKFILLQYGGTLQVCSYKKMEEMGGELPILKNGKEVSDLGKYMTELLGNFQKHLGYHNPDTTLGQDEITVSGGHGGIGSISNVFGECTIEPYVGQRYVDMFKNKIITDLSGVPFNLNLKWSEPVEFNPKEPEMNNKVIDIDDVTKLDKQGNIIQQESYEYNLIDKTGNTKTVTKEDFVKAGVNKRMKANSVTIDNDNKKVIANFEKFNYKK*
TB_GS09_5DRAFT_10003554	TB_GS09_5DRAFT_1000355417	F085105	MLLNSLNNQFIVLFPQNFFYSEIRKKWDPIVRRLKLPYESMEDYINASIQSITFPSVELANVEQGQGQFMITYRGGKELEPILDKNLSLTFKLTEGFISYWILFEQIEMFREYAPTVPFWPPMYVSFLDHHGFELMVFSFEKIIPTNLSQLDISYSKTVAEFTTFNLGLKYNRYNINRRFQELKGDNDII*
TB_GS09_5DRAFT_10004762	TB_GS09_5DRAFT_100047627	F018020	VSETFGDGTTENVYIILSGYYSLIFEIKRVPIPDPVPPPKE*
TB_GS09_5DRAFT_10005479	TB_GS09_5DRAFT_100054794	F026554	MIIKLMLIQIIMTLSISFYDIVFYFIYKIMKLEVNEIYHQYIIRVVIFALFTFKRQIRQPNVYKQSVYSFVEKRLPWKINLLIDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHFLYS*
TB_GS09_5DRAFT_10010135	TB_GS09_5DRAFT_100101356	F065185	MSVLKKKSMKIIFEDKSYISVEKSSKDDHIVIIIQAKDAENPQKKITNAVEITLDQFKSLTSLM*
TB_GS09_5DRAFT_10010934	TB_GS09_5DRAFT_100109349	F006142	MKRKRSKYLITELSEFNLQRMNDDSVQASTHVDDPALSTNAFDRAQDAIRQSMARINDIMYNTKGTNAYRSLRSKLALEEQDIKSMKILRIIKSETLGYDIYLTFVIGEEEYWGKLEDVLGQNPELTSEVFKDADLYQPKEWIIKITGLITKTIKTWLKPEPGKYKLINNEIICYSVETGKQLKMENGIIIDVVRSHNDKIIIRHDSDTYTLVGDNYIYFNWWFEKLE*
TB_GS09_5DRAFT_10011023	TB_GS09_5DRAFT_100110234	F039671	MYELFGIILLITPPTVSIPKESGVASIITTSDPVSYPQITPP*
TB_GS09_5DRAFT_10012524	TB_GS09_5DRAFT_100125246	F021773	MKLYKKYSLFLESKNNVKTKKNIVRDLCVSMLLINNTFLDNILDRGLAARYQENSQVFLTDLKNLLIAKNRLKIGKFEGNKCIEDDNLSLVNSVFDGVKFDIEKDWNELVNARTISRNIIDKLVPNKKLESDDIKSIYWNLDLDDDHQEDIVVELRDGQQFSFFLNKNLSSSKSTSFNTFAEDLIGQDLDLLFTEEYLVKWDKLTQEWIRILYDNANKDIQFHIEKFIDPKRIDSIGYFDYFDIRHGDLKYKHLGEFFKVFDKNILKFSELLLEIWKNRDNCFMDPERVYQEWEEVKIIVLNSRILENLLTTSLKSNFPDDIKKLDDGFKLADGTVKMKLFKTLVEKMGCLERPTYYLGQNGNIFNLIPERQFFRDHYDDLTIKFDYHVNFKVKEDEDDNDFKMKIKLLLDGEELIDMDITIKMTSEMSGRLTSKYSFNLSSHFNYLVSLKRGEEIQEEKEED*
TB_GS09_5DRAFT_10012524	TB_GS09_5DRAFT_100125249	F039135	MKYLKKYNKFKESILVDLNIQSVADILESLTIWTDSLLEVIGAEEVDIFDTLKLPEEDYKDKLDLDYLEDNVEFINSLSSIALKKSEVKLSDDYQTFLNKPCRFMFIYNINSNELENPTYLIFQSWNETLNKWEDVKLYKIHENIQRFYDKLTSRTIELVDGDENYIYNVTNGNEWILQNVEKENDIYKKVFRKEELQDLLKERKIKVNIL*
TB_GS09_5DRAFT_10023955	TB_GS09_5DRAFT_100239555	F016728	CVTCVWAGVDSAWEQEKLEARKMLVNRAGSHTSGARFVGTLLTLQLICLI*
TB_GS09_5DRAFT_10025145	TB_GS09_5DRAFT_100251451	F002525	WAVDNAWEQEKPEARKMLLNRADSHTSGARFVGQFLT*
TB_GS09_5DRAFT_10025712	TB_GS09_5DRAFT_100257121	F002525	VWAGVDSAWEQEKLEARKMLENRAESHTSGARFVGRF*
TB_GS09_5DRAFT_10027441	TB_GS09_5DRAFT_100274411	F002779	MKNLKLELFNFKKDLALDQEEIFVIVESHMNACNQHSEKTIIISLNERLTPYTYDKSVKSLLENLNDDMANYELLYELKNLYSVLNSKNQGELYRQPINVLLQTINLETDQDRMSKVLNELAVYDWVPEIKLFVHNLTKSPEKRNNLLSGGNAESIFTIVEQVEEGHITLVRDSWFLLTENSIEKTLLENHVKDMETLQSLRTLETAMKYASVTENRINFRISEYMTIGLGVGKKTLFINDDELNGETTLESLFNSPIVPIVNKNFYPILLETSKNLDKFVELDVVKRVNNLINPYLEVFAFNYKNNTFVYRCDERYGNSFFKYESALELVNEVRNELNCDLTYFYENKLGKELIVKRKLEDKEREITLKLEDIHFNIDKIKGSIQMIGESETLTTALKNLEKRSTNLNAELNAVKELQYKERVIG*
TB_GS09_5DRAFT_10027441	TB_GS09_5DRAFT_100274412	F006895	MIGERFNMDDVFFRDLTICVLDTLEGQVKWINRFSSGDKYVNVPFYYSMTGDERFLLDSFVDDIVSGDSSGNGRYVELNTDMIPRGHVTMTGFNIRSDEFANPNVWLKTVVENEVEIKKILGRVRSVPVSVTYDLEILLDSELDIFKCSQSVMDTLWIYKFMYFEHNFMNIDAVILMPDTNGIEISREKNLTSDNTVKLKVSFEVQTYYPAFRKDRIDMPGYSKGTGQSDLNGLLIDGGYSDYFTQPGSTQSSYYNQDDYFLQPKRTRWFNDILRTREQSSSRNDNPGTRGIQNRNIND*
TB_GS09_5DRAFT_10030817	TB_GS09_5DRAFT_100308173	F002525	VWAGVDSAWEQEKLEARKMLENAAESHTSGARFVRRRLT*
TB_GS09_5DRAFT_10033338	TB_GS09_5DRAFT_100333383	F016728	PTVCVTCVWAGVDNAWEQEKLEARKMLLEAAESHTSGARFVRRFMFERYLFLRC*
TB_GS09_5DRAFT_10033640	TB_GS09_5DRAFT_100336401	F002525	VWAGVDSAWEQEKLEARKMLENAAREASHTSGARFVRPAFDF*
TB_GS09_5DRAFT_10033855	TB_GS09_5DRAFT_100338552	F002525	RVWAGVDSAWKQEKLEARKMLEKAAESHTSGARFVRWRF*
TB_GS09_5DRAFT_10034833	TB_GS09_5DRAFT_100348336	F002525	VWAGVDSAWEQEKPEARKMLVNRAESHTSGARFVGWLCARLAD*
TB_GS09_5DRAFT_10039504	TB_GS09_5DRAFT_100395041	F002525	WAGVDSAWEQEKLEARKMPVNRADSHTSGARFVGTLFALRRL*
TB_GS09_5DRAFT_10039592	TB_GS09_5DRAFT_100395921	F002525	VWAGVDNAWEQEKLEARKMLVKCAESHTSGARFVGWRVH*
TB_GS09_5DRAFT_10063576	TB_GS09_5DRAFT_100635764	F015419	MEYKVQITDEDGNVHLYNISQNSSEPKSLNDFILKALKISEDKRKLPFMIQTPNGMEVFPSIKMKFENYGLPLLGDKLEAMHVTWVG*
TB_GS09_5DRAFT_10066614	TB_GS09_5DRAFT_100666142	F002525	VWAGVDSVWEQKKLEARKMLLNRADSHLSGARFVSPLYESKGFCH*
TB_GS09_5DRAFT_10072091	TB_GS09_5DRAFT_100720913	F002525	VWAGVDNAWEQEKLEARKMLENAAESHTSGARFVGRRLWNDYLP*
TB_GS09_5DRAFT_10078630	TB_GS09_5DRAFT_100786305	F002525	VWAGVDSLWEQEKPEARKMLENAAESHTSGARFVGWLCARLAD
TB_GS09_5DRAFT_10083917	TB_GS09_5DRAFT_100839171	F002525	AGVDNAWEQEKPEARKMLVNRADSHTSGARFVRRGF*
TB_GS09_5DRAFT_10090466	TB_GS09_5DRAFT_100904661	F002525	AGVDNAWEQKKLEARKMPVNRADSHTSGARFVRLRSWTLLLF*
TB_GS09_5DRAFT_10105124	TB_GS09_5DRAFT_101051243	F095532	MKRQNVIIFVAKDKAPECWGNFKKLCLAKGFDRLPYHSLKARNFPIIHKEWIIHKVPFL*
TB_GS09_5DRAFT_10111589	TB_GS09_5DRAFT_101115892	F016728	LTVCITCVWVGVDNAWEQEKLEARKMFVKRAESHTSGARFVRRGLELIID*
TB_GS09_5DRAFT_10116826	TB_GS09_5DRAFT_101168262	F020177	TYWDRLRGYVSELRVDARWILRNNDDNKPYGSLRIVSHPDLPPGQLRANFTYVTKIRPKTKEEKIKTIEDYQMELIELEVYSIGEDIKTEVKIYEAPFHELQEMFDVKVFE*
TB_GS09_5DRAFT_10168732	TB_GS09_5DRAFT_101687321	F002525	GVDNAWEQEKLEARKMLVNRAESHTSGARFVRRGL*