3300000218: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P20 2000m

Overview

Basic Information

• IMG/M Taxon OID: 3300000218
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053674 | Ga0026169
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P20 2000m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42025244
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	4
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia hansenii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P20, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.566667
  • Long. (^o): -138.666667
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008912	Metagenome / Metatranscriptome	326	Y
F009986	Metagenome	310	Y
F011338	Metagenome / Metatranscriptome	292	N
F012070	Metagenome	284	Y
F012162	Metagenome / Metatranscriptome	283	Y
F012354	Metagenome	281	Y
F013190	Metagenome / Metatranscriptome	273	Y
F013191	Metagenome / Metatranscriptome	273	N
F016978	Metagenome	243	Y
F024888	Metagenome	204	Y
F025055	Metagenome	203	Y
F026401	Metagenome	198	N
F026708	Metagenome / Metatranscriptome	197	Y
F031535	Metagenome	182	N
F032684	Metagenome / Metatranscriptome	179	Y
F037770	Metagenome	167	Y
F040684	Metagenome / Metatranscriptome	161	N
F052659	Metagenome / Metatranscriptome	142	N
F065850	Metagenome	127	N
F066858	Metagenome / Metatranscriptome	126	N
F074984	Metagenome / Metatranscriptome	119	N
F081452	Metagenome / Metatranscriptome	114	N
F105860	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LPjun09P202000mDRAFT_c1000470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	4539
LPjun09P202000mDRAFT_c1001254	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	2763
LPjun09P202000mDRAFT_c1001675	Not Available	2371
LPjun09P202000mDRAFT_c1001787	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2285
LPjun09P202000mDRAFT_c1002233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2028
LPjun09P202000mDRAFT_c1002809	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1760
LPjun09P202000mDRAFT_c1002993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1675
LPjun09P202000mDRAFT_c1003772	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1432
LPjun09P202000mDRAFT_c1004320	Not Available	1308
LPjun09P202000mDRAFT_c1004773	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1220
LPjun09P202000mDRAFT_c1006253	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1017
LPjun09P202000mDRAFT_c1008074	Not Available	852
LPjun09P202000mDRAFT_c1010523	Not Available	727
LPjun09P202000mDRAFT_c1010557	Not Available	726
LPjun09P202000mDRAFT_c1010909	Not Available	712
LPjun09P202000mDRAFT_c1010995	Not Available	710
LPjun09P202000mDRAFT_c1011402	Not Available	693
LPjun09P202000mDRAFT_c1011575	All Organisms → cellular organisms → Bacteria → Proteobacteria	687
LPjun09P202000mDRAFT_c1015512	Not Available	577
LPjun09P202000mDRAFT_c1016582	Not Available	556
LPjun09P202000mDRAFT_c1017403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia hansenii	540
LPjun09P202000mDRAFT_c1017708	Not Available	534
LPjun09P202000mDRAFT_c1018978	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPjun09P202000mDRAFT_c1000470	LPjun09P202000mDRAFT_10004701	F081452	LSRLFMIPVLSLAQVAREDGVISDASRIFKDPTNFNIIISDKVA*
LPjun09P202000mDRAFT_c1001254	LPjun09P202000mDRAFT_10012541	F037770	AFNADTIVDLPEPGMPVKQTISFTKMKLLTNSSL*
LPjun09P202000mDRAFT_c1001675	LPjun09P202000mDRAFT_10016751	F025055	MSYFRNSVGDKKIIKATYSDSQMIEVLGGTVKKIFNYEEEDNVTFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLASQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEILVMRNGYLK*
LPjun09P202000mDRAFT_c1001787	LPjun09P202000mDRAFT_10017871	F052659	MLLSGNPGTETRSAVFINGRLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
LPjun09P202000mDRAFT_c1002233	LPjun09P202000mDRAFT_10022333	F026708	FFSNNKTNGVTARKPTKNRTELKVNGPILSIPVSWAMNVVPQIKVQATKQTNDIVFFIS*
LPjun09P202000mDRAFT_c1002809	LPjun09P202000mDRAFT_10028092	F031535	MIDSIDKPSPKATTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
LPjun09P202000mDRAFT_c1002993	LPjun09P202000mDRAFT_10029931	F032684	MRLLCTLRVLALIDKFKSNFSLFRAEEVIFLPFGIITKNTLKNIIQPKITPTDKNANLDPKIFVKQNEITAPIMSSTTI
LPjun09P202000mDRAFT_c1003772	LPjun09P202000mDRAFT_10037725	F013190	SATWDGSIPLNETPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK*
LPjun09P202000mDRAFT_c1004320	LPjun09P202000mDRAFT_10043202	F040684	MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFXXANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGCCNTNS*
LPjun09P202000mDRAFT_c1004773	LPjun09P202000mDRAFT_10047733	F031535	IDKPSPKTTTDNIIARGPKNTRAYVAMASANQLRGLTNEVNHFQVPFKTFGFYTIDIE*
LPjun09P202000mDRAFT_c1006253	LPjun09P202000mDRAFT_10062531	F012354	RLMFPVLKIKSSSVNPVASIPKPTPIAKKAIDSLNNVGLAVFLNPIYEIVPITRPTNSPTKFRIISKKNSNYADSVTVLNKVSEQIF*
LPjun09P202000mDRAFT_c1008053	LPjun09P202000mDRAFT_10080531	F066858	GERSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
LPjun09P202000mDRAFT_c1008074	LPjun09P202000mDRAFT_10080742	F012070	QGKWMPIEIKMIEAANESYDDYILYEIXCDYXDXEYTIKYIMDKRPKQSIECCPFCSNLIEEPAEIIDDEEIGWD*
LPjun09P202000mDRAFT_c1010523	LPjun09P202000mDRAFT_10105232	F026401	VIKVESILKWKIEGSLLKKLKMVRAQILSKNSDAVAISDNDLHITLAAGTGWQKLRSRIKAKDIDEPEFSMDINPTVKVIEKGGSKSWYVKLKNQQDWKEYVMDSLQGTYDSGRVYHISLANLTGNKVDSVALVVEQKNHHNINPKKYHKKFKDFRRRY*
LPjun09P202000mDRAFT_c1010557	LPjun09P202000mDRAFT_10105572	F013191	DFNLFKKHTTYGCDYIYRKFIPNHLICQDIDAQLELITNDLTKKYKCYFRGFDLIPSMHYDMLKQTTNKKYKIGENQPKTDNFIQFAHEGVMYFIWIDSSDPTENIAWWSDNTFEEWVSDTVALRLACQQNPSETFFYCVGFDYYHDQTKDGIFLVSSITEFHDENQDSWIGQHKHIEEEYPNSKFIFVGKDMDYGEFENLLNK*
LPjun09P202000mDRAFT_c1010909	LPjun09P202000mDRAFT_10109091	F065850	MKIKSTKQFWWRFNHLKRNGGEITVTDRTSEMDVKEFNRIESLVNKRV
LPjun09P202000mDRAFT_c1010995	LPjun09P202000mDRAFT_10109951	F074984	VNKESYS*TNQAVKMNNKINTAEVILFNILYMFMNCDFDVSDKESEIIENTMRELTDEEKKIIESQTKDNEKIISKGFDKIKPRTMEMGKLINETKDSEGIKKSFIEVIKAMILIDGVIHKNEKTMFNELCKLWDVESALEIK*
LPjun09P202000mDRAFT_c1011402	LPjun09P202000mDRAFT_10114022	F024888	MNLDKIDLKNIHKIVGKIVDGIQKEEMKGKTPDEFAQERGFDNWXEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIEGDQRTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW*
LPjun09P202000mDRAFT_c1011575	LPjun09P202000mDRAFT_10115751	F016978	RDALGIVDSQPGIVRGVHATYPTPEDYEDLTNPGIVYKVQFMKGYFLLKDYQMDLLGKQQLFDFMYDFSHLDNNSDDGHYEPLE*
LPjun09P202000mDRAFT_c1015512	LPjun09P202000mDRAFT_10155122	F011338	MRLRPLRLIMQLXXXAFAANNAITLEGGTGEGEILLENESGVLQHPQSDSWSTTIADWNTLRFTGTLNSSVDGETIRLSDINGTNSSQNHKINWAFPTEVTKSA*
LPjun09P202000mDRAFT_c1016582	LPjun09P202000mDRAFT_10165821	F009986	KYDKIMSYKELLKYIKDPDIEQEYKVNTLKCSDNNGEKDQIIDWCRDKTIRGNGKFETYGKVKTAQHNHNFKVLKDRKHFSEPQED*
LPjun09P202000mDRAFT_c1017403	LPjun09P202000mDRAFT_10174031	F008912	VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKHRIPFLQSIKDMCKHKFVIEMIIFPGIPELSKERIAKALKDGIQRADSIQFVDEQYEQYLHTISILDDEKDFYRMIKRV
LPjun09P202000mDRAFT_c1017708	LPjun09P202000mDRAFT_10177082	F012162	MLLTEEQTKYYLNDMIEHYKEKEXRTVGNFSWQRSEAEYRRKTFEDMKIVLFGDDDNGHTRQ*
LPjun09P202000mDRAFT_c1018978	LPjun09P202000mDRAFT_10189781	F105860	EVARIHDSAVVPTASGTSYTLSAGTGFGFRRRILTFDSGDEGSNLTLTAADSGSIIYVTPTEPVDLILPLVGTETGLWFDIIFAAQVNKAFEIKTSGQDGNDNITLMNQYVGPSQNLDVGGSDHDVLYIANANIGTRIEIINCVGGDGERWHAYVRSLGSQAATIS*