3300000209: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 2000m

Overview

Basic Information

• IMG/M Taxon OID: 3300000209
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0053613 | Ga0026144
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P20 2000m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64433866
• Sequencing Scaffolds: 51
• Novel Protein Genes: 54
• Associated Families: 50

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	38
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	3
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P20, Pacific Ocean
• Coordinates
  • Lat. (^o): 49.566667
  • Long. (^o): -138.666667
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F001048	Metagenome / Metatranscriptome	793	Y
F001493	Metagenome	683	Y
F001625	Metagenome / Metatranscriptome	661	Y
F002006	Metagenome / Metatranscriptome	605	Y
F002745	Metagenome	533	Y
F003092	Metagenome / Metatranscriptome	508	Y
F003285	Metagenome / Metatranscriptome	496	Y
F006198	Metagenome / Metatranscriptome	379	Y
F006552	Metagenome	370	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
LPaug08P202000mDRAFT_c1000698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5022
LPaug08P202000mDRAFT_c1001021	Not Available	4210
LPaug08P202000mDRAFT_c1002625	Not Available	2644
LPaug08P202000mDRAFT_c1002947	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	2466
LPaug08P202000mDRAFT_c1002987	All Organisms → cellular organisms → Archaea	2442
LPaug08P202000mDRAFT_c1003588	Not Available	2174
LPaug08P202000mDRAFT_c1004645	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → unclassified Nitrososphaerales → Nitrososphaerales archaeon	1872
LPaug08P202000mDRAFT_c1004958	All Organisms → cellular organisms → Archaea	1802
LPaug08P202000mDRAFT_c1005268	Not Available	1726
LPaug08P202000mDRAFT_c1006203	Not Available	1547

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPaug08P202000mDRAFT_c1000698	LPaug08P202000mDRAFT_10006988	F090504	MVVFLVLTIIIFGLILPYWAGVIAKRKGKSFVLWCILQLLFFFPIVLIAFHAPVEKEK*
LPaug08P202000mDRAFT_c1001021	LPaug08P202000mDRAFT_10010216	F057445	LQKLSKAAVNEILPKAVSLILIKERLENKRKKDFL
LPaug08P202000mDRAFT_c1002413	LPaug08P202000mDRAFT_10024136	F066858	EKTSKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISXDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY*
LPaug08P202000mDRAFT_c1002625	LPaug08P202000mDRAFT_10026255	F015752	MRNFKNFDNITEARDAYIWDTNPKTLEDAEDPEVMTSGFGRLGFSQIKDKLVYGSKQFVKWAQDGNYESINSYMSSFHNLLETLQVIEKEMKKPAWKKKITMLKRAGK*
LPaug08P202000mDRAFT_c1002625	LPaug08P202000mDRAFT_10026256	F002006	MPEELQSVKLQVGLLQQDVEARGKQIDALLSKLDSTADKIVELTVEIKSLNSRQERHSKVDDEIRSELKLLHSRAGSIHDEIGKSERRVSDSIHKLEERVRAVEQYKSKLMGIAITVSAGVGLGVASIMGLLNIFKD*
LPaug08P202000mDRAFT_c1002947	LPaug08P202000mDRAFT_10029474	F027203	QGSLLNDFVTTAPAPARYNRSKILSDIPKXPEARIVGLSRVNVPIEVERLAVTLNXLIIFSYNS*
LPaug08P202000mDRAFT_c1002987	LPaug08P202000mDRAFT_10029872	F021319	MTRPEKDANIRINCEVGAARFIEIPSATTINGTKISPPPTPKRLDIIPAKKLAPAEKTSKIRDVSKGFRSIFLFRKMYDADAKRTSANKILKISGDRSEDMNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
LPaug08P202000mDRAFT_c1003588	LPaug08P202000mDRAFT_10035887	F069480	LIYIELIDRIYILESRNNIKRVEGNAGQILDEAPKNKPYNTVKTVFFSVFKPVVFL*
LPaug08P202000mDRAFT_c1004645	LPaug08P202000mDRAFT_10046454	F024888	MNLDKIDLKNIHKIVGKIVDGIQKEEMKGKTPDEFAQERGFDNWMEYAAWSRHTGGDYHMMEMMLKSKWKEQDPEEFARQKKIEGDQRTREHSYIGILDEEKIKKKNNGHKYYKPVHKSEFSAEELEVIYDERGVGGEPVEYRW*
LPaug08P202000mDRAFT_c1004958	LPaug08P202000mDRAFT_10049582	F078841	MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLFELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINTDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFGNIMSMYASMTLITQQPSKAKTSAVITNTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMDGGWVLENHPDFKK*
LPaug08P202000mDRAFT_c1005268	LPaug08P202000mDRAFT_10052682	F057445	LQKLGKAAVNEILPKAVSLILIKERLENKRKKDFLDLCDLFSVAPDVIKIM*
LPaug08P202000mDRAFT_c1006203	LPaug08P202000mDRAFT_10062032	F040684	MKRVIYLIILAMSLTLVFSQGKPCCKNKNGKGKVACKFNRANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNTSINKKNCTNCAKSPWWKFWGKKKGCCNTNS*
LPaug08P202000mDRAFT_c1007721	LPaug08P202000mDRAFT_10077214	F016731	MGMAISLILTSCAKNIADKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYDSGGDQKDEVAFDVKQVNGISIIIIRGT
LPaug08P202000mDRAFT_c1008078	LPaug08P202000mDRAFT_10080782	F001493	CRQRISMKRFKEFIKEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILAGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKRIEKDLEKLLVEILVKNGMGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMXKYSKPLKSVFTDYAFDKELVPDPDSGXKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTRN*
LPaug08P202000mDRAFT_c1008322	LPaug08P202000mDRAFT_10083222	F026397	MKKTYKILLLSSLFFIIGCGDIMMHRKPIISVTVSSNCHDLYRDDNVYINISRVGTDWNSDMYVDVGSTGALAVFVEGKYNITATAARKNLTGSNYESIKSIFVYHGEERNVEFYCN*
LPaug08P202000mDRAFT_c1008744	LPaug08P202000mDRAFT_10087442	F012070	MPIEIKMIEAANESYDDYILYEILCDYCDEEYTIKYIMDKRPKQSIECCPFCSNLIEEPAEIIDDEEIGWD*
LPaug08P202000mDRAFT_c1009020	LPaug08P202000mDRAFT_10090201	F031535	TRAYVAIASANQLRGLTNEVNHFQVPFKTFEFYTVNIE*
LPaug08P202000mDRAFT_c1009344	LPaug08P202000mDRAFT_10093442	F105358	MDVPSKNKIIIETSNTHSFADVDFIVYCQKALYSKTPYRVRIVDWEPEYCIAYIKTLRQHHRWKPLTFKYQRRGHYIFIFKT*
LPaug08P202000mDRAFT_c1009429	LPaug08P202000mDRAFT_10094292	F009986	MPSYTFINKLTNKKYDKIMSYKELLKYIKDPDIEQEYKVNTLKCSDNNGEKDQIIDWCRDKTIRGNGKFETYGKVKTAQHNHNFKVLKDRKHFSEPQED*
LPaug08P202000mDRAFT_c1010657	LPaug08P202000mDRAFT_10106572	F025055	MSYFRNSVGDKKIIKATYSDSQMIEVLGGTVKKIFNYEEEDNVTFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLASQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIVSYEKWLSKIDNELVEKLKLLI*
LPaug08P202000mDRAFT_c1011750	LPaug08P202000mDRAFT_10117503	F027871	MKSFLHKIQGIGIKCYLQVLFTVGAFMSTRSWVDKHIKVCYNRLDEINSDYDKQTRTNWYPKK*
LPaug08P202000mDRAFT_c1011922	LPaug08P202000mDRAFT_10119221	F034336	MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWISQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFIKDNPENLYKPSIALIRQSLLRAFDQYDIAGY*
LPaug08P202000mDRAFT_c1012980	LPaug08P202000mDRAFT_10129802	F054935	MKRRTFIKFTSLISSAIFLPLAQLFGAKPKPKKSLTTFVSDLPLQGSPFRKNCDSLDNYNDISFETMINDIVHYRTPTKLRDKLILGIKTKDD*
LPaug08P202000mDRAFT_c1013126	LPaug08P202000mDRAFT_10131263	F022907	MDEDNTLDIRQSVGDVGGDFTKSITIESGGDERVGDIEAVIDLTYNIFQYIPELLFVSVYGLAMYAGVLLLHKHIKGND*
LPaug08P202000mDRAFT_c1013252	LPaug08P202000mDRAFT_10132521	F012125	GRKSFFSAGKPKNLPAFYFLVVAGIILMVLLFKWFD*
LPaug08P202000mDRAFT_c1013276	LPaug08P202000mDRAFT_10132761	F006552	MLKFPLLISPVLKIKSSRINPVANIPKPIPIAKKAIDNLNNVGLAVFLNPIYEIVPITRPTKSPTRLRIISKKNSNYADSVTVLNKV*
LPaug08P202000mDRAFT_c1013533	LPaug08P202000mDRAFT_10135332	F035075	LRKVLNDLDIIKLICIYDNAISVKYVNKKNQRRLWGTPKNIEAVEKWVLKKEELEKKIRKNKNQ*
LPaug08P202000mDRAFT_c1014311	LPaug08P202000mDRAFT_10143112	F008912	VKNLVVTLGITGCGKSTWLKDKSPVIETDDLRVELLDDISNVTQEGFIFGTAAKRISKLFDTHDTVYFGATLVDSKHRIPFLQSIKDMCKHKFVIEMIIFPGIPELSKERIAKALKDGIQRADSIQFVDEQYEQYLHTISILDDEKDFYRMIKRVDNPNDEARKINNRVEDISEKLDMIIEQNDQD*
LPaug08P202000mDRAFT_c1014962	LPaug08P202000mDRAFT_10149621	F002745	KMKTFKSYLTEFAQQSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLAGLENLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAKDDIWSQVDKTGRRWVELSWFASATRTGPKFDKVEKDLNTLITNLVKKHLTKILGKNTVISTHEYELWGAMKRHLHGDGQKLRLVIKDYFDGVEKVLKKNSEVMSNILHGYAKGKRMTDNAWDEQIVNNIKIKKVHVWKTNRDDVWGEDEIKQHITDVHKWPIKVWDASI
LPaug08P202000mDRAFT_c1015225	LPaug08P202000mDRAFT_10152251	F008912	MKNIVATLGITGCGKSFWLKDKNPVVETDDLRVELLDDIDDLTQEGLIFSTAAKRMVKLFDTHDIVYFGGTLVDSKYRLXFLQSIQDMCXYPIVIDLMIFRSDPEESKERIEKALKAGVQRANSIYLIDKQYSQYLHTIKLLESEVQRANSIYLIDKQYSQYLHTIKLLESE
LPaug08P202000mDRAFT_c1015491	LPaug08P202000mDRAFT_10154912	F101846	MKLDENWYVHAPWAQLVCCTEIPEDKLVKFYAISNEVLDESGVTKPSKDNYGNGVIPLSW
LPaug08P202000mDRAFT_c1015502	LPaug08P202000mDRAFT_10155022	F029786	YDLDEIERQRERERMSRGIRPVELGKDEKPWTAVDIELRDEDFTMIALEAHERDITFNKMINIILKDGIKQAQYRFEHQSKPQLLNEDK*
LPaug08P202000mDRAFT_c1017332	LPaug08P202000mDRAFT_10173321	F032813	MKTNEEGHVWLEKSQAYICPSYLNKTCTDFSDTDSESLYNLYQKHFPNAESNAIKSQIKDEVFNLIGKDNYKKKNLIKALRNKFPEIKSGVICRILKKYLSLRVLE
LPaug08P202000mDRAFT_c1018629	LPaug08P202000mDRAFT_10186291	F090619	MSSEKYIQIRAKVPIDSDGTVFKEFNANEKFRRQDISIMLKLLPLIQKYELDFLPKIIDYNENGYRYKYVDGKTLKEEIDNGILKLTQKMIYEMKIAMDDIWKRFYQISIENKDDELFGGNGFLYHGDPWLGNAIWNDDSKELKFIDIDSLSIADFVPMTQ
LPaug08P202000mDRAFT_c1021114	LPaug08P202000mDRAFT_10211141	F016412	MKIENILEVIVGTLLVIIIAILLMPKEEVSNEPIIIEETFNEYPLTAWHDTDKKGDVVKIKYRVSNRDTFIEVLDDNGKIVHKQPFQRSPWDDGRSRDFTYSWVLYDTQDYGDEIPPGEYEIRVCHKYSRNIDLRTWITI*
LPaug08P202000mDRAFT_c1022032	LPaug08P202000mDRAFT_10220321	F064804	MDERKHHDMVMIHHADKLAKARDLIIIFLFGSILIESLTGVHLLGSWWQ*
LPaug08P202000mDRAFT_c1022032	LPaug08P202000mDRAFT_10220322	F001625	MALTISSSDWTNANVRKTLSWQAALVSKLRVFAVKVTFGASDAYATGGVSADLKEGRISTLVAVIPTYSNIDRIVKYDKANEKITIWDVGGSAGSGLVQHANASSSTNSKIFEFLVIGY*
LPaug08P202000mDRAFT_c1022583	LPaug08P202000mDRAFT_10225832	F103429	MKGNMKKAVIEILYEGEPVLGSRTNGQYLVREYEDEEELGGSFYKTIEEAEARVLEYQNME*
LPaug08P202000mDRAFT_c1022912	LPaug08P202000mDRAFT_10229122	F001625	MALTISTTDWTSANVRKTLSWQAALVSKLRVYAIKVTFGASDAYATNGVSADLKEGRISTLVAVIPTYTDALHHVVYDKANEKIKLYGSGSGSSLVEVANTSSTTNSKIYEFLVIGY*
LPaug08P202000mDRAFT_c1023815	LPaug08P202000mDRAFT_10238152	F031252	MKSFKGYLTEFAMQSTSDYVFNAGSSSSGLMIPISGPMFKRIWPDTIRTTVFHTTDPWGF
LPaug08P202000mDRAFT_c1023932	LPaug08P202000mDRAFT_10239321	F101330	SNQSSLMWLQNNYTVSLCGFIGVCIGYFTGHQEICIMIGVGIGIIIRIVQSKSK*
LPaug08P202000mDRAFT_c1024100	LPaug08P202000mDRAFT_10241001	F074007	MDVKERTYGKYGNNLIFKKELLDIVEELEGQLLFFMHISRWGLPLENRWLDYFEYEFKPDKKFYIIFEEEEFSTHTVLDLDKVVDFFKEKGVDKDKLIWVTASHNFNDLLKRFNKYIEIKSIPLHWGDSRFMKQGNIIKSIVKDKVINYDVKSFGFNSSFYQLTNTKILSEIETKKTPSKLFCCP
LPaug08P202000mDRAFT_c1024245	LPaug08P202000mDRAFT_10242454	F000567	LLKLTQKITTWHEGMFKYITLKSKTSVFFTWLLVFICLYEIFEHIIIPIFLIWWGFFK*
LPaug08P202000mDRAFT_c1024258	LPaug08P202000mDRAFT_10242583	F001048	MKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS*
LPaug08P202000mDRAFT_c1024583	LPaug08P202000mDRAFT_10245832	F018382	IKIDAAKVNLKPIKRKGGKCSIAGLAITKPKPKKIGTSVAKNVSLRLNIYSH*
LPaug08P202000mDRAFT_c1025778	LPaug08P202000mDRAFT_10257781	F031535	DKPSPKTTTDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFSTVNIK*
LPaug08P202000mDRAFT_c1026161	LPaug08P202000mDRAFT_10261611	F003285	MPDQESIHNLQTEIQTLKIKDEFRTKELDALMNKLSDTSSKLNALSENIGRLLAGQELHKTSDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYKKVDSLE
LPaug08P202000mDRAFT_c1026674	LPaug08P202000mDRAFT_10266741	F042009	MICSNCGEKISKVIDIGHHWNLSEDLAFACSEKCAEEAPKNWLSENPTTLYKNKFKKT*
LPaug08P202000mDRAFT_c1028607	LPaug08P202000mDRAFT_10286072	F011529	MRWDEMTIKKRKLEGVRLRSVRLWLDDKGFHPFLDQDELLRPDMQKSMSCKYADLPKGAWDLMDIHDLNLAKTSKYTKFLEK*
LPaug08P202000mDRAFT_c1028610	LPaug08P202000mDRAFT_10286101	F101351	IKSYDNNGINVWLDKRGKIYDVPFWQFTMDGIQWMVLDERHGSASQFYSHYKLAKGHVICTGLGFGTREQWLASKPEVTKITVLEKFKEVIDYHKDIGTKWHDKIEIINCDANDYKGSCDFLSIDHYEYDDVLRILDSIKTVCNNITCESAWFWMLEPWIRLG
LPaug08P202000mDRAFT_c1029167	LPaug08P202000mDRAFT_10291671	F006198	NWRDMEVELDVDCNNCNATYTMIYDSDDIQTRQEEHAFHCSFCGILMEPYYDEFFEED*
LPaug08P202000mDRAFT_c1029317	LPaug08P202000mDRAFT_10293171	F003092	EDNVVVEDEETSMKLWLDGVEVDVEANYEKITTYGEEVEYIADDGQTYTKKILVIHFQKEGGRVELTKEHYAVVFTDWEGSTSNSKPIDEGSYQWPAQCPICVRLCICDHGAESKWVRMEIVGDSDVAIMGSARIKKVDEKDGGWIISGNGEGTFYNPYIEANMEGKIEFTNLEI
LPaug08P202000mDRAFT_c1031455	LPaug08P202000mDRAFT_10314551	F014511	MGMKNVTIKTVVNEKFRFKAMDLNGSVFVFEDKPSIPIDIACDTWDVKTGEVLQISPPTPMSTSSLDLGDWRESLVELDDEVI
LPaug08P202000mDRAFT_c1031603	LPaug08P202000mDRAFT_10316032	F063069	NRPIKKLCPMEEKKVKTKPKIIILKLDLTISIIIL*