Sample 3300000155

Basic Information
IMG/M Taxon OID	3300000155 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0054194 \| Ga0026128
Sample Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300000155 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0046785 | Gp0054194 | Ga0026128

Sample Name

Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200m

Sequencing Status

Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	61879833
Sequencing Scaffolds	26
Novel Protein Genes	27
Associated Families	24

Dataset Contents

Total Genome Size

61879833

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
Not Available	18
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Gaprivervirus → Escherichia virus VR7	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Gaprivervirus → Escherichia virus VR7

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → coastal inlet → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → coastal inlet → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Saanich Inlet 36, Vancouver Island, BC, Canada
Coordinates	Lat. (^o)	48.5663346	Long. (^o)	-123.5193257	Alt. (m)	N/A	Depth (m)	200
Location on Map

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Location Information

Location

Saanich Inlet 36, Vancouver Island, BC, Canada

Coordinates

Lat. (^o)

48.5663346

Long. (^o)

-123.5193257

Alt. (m)

N/A

Depth (m)

200

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F006959	Metagenome / Metatranscriptome	361	Y
F007138	Metagenome	357	Y
F008692	Metagenome / Metatranscriptome	329	Y
F009560	Metagenome / Metatranscriptome	316	Y
F010921	Metagenome / Metatranscriptome	297	Y
F022750	Metagenome / Metatranscriptome	213	Y
F023708	Metagenome	209	Y
F025141	Metagenome / Metatranscriptome	203	Y
F034189	Metagenome / Metatranscriptome	175	Y
F042172	Metagenome	158	Y
F058066	Metagenome	135	Y
F058917	Metagenome / Metatranscriptome	134	Y
F063083	Metagenome	130	Y
F063751	Metagenome	129	N
F068917	Metagenome	124	N
F070155	Metagenome / Metatranscriptome	123	N
F071312	Metagenome	122	Y
F072434	Metagenome	121	N
F074007	Metagenome	120	N
F078582	Metagenome / Metatranscriptome	116	N
F089397	Metagenome / Metatranscriptome	109	Y
F091863	Metagenome	107	N
F103400	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
SI36aug09_200mDRAFT_c1003570	All Organisms → Viruses → Predicted Viral	2351	Open in IMG/M
SI36aug09_200mDRAFT_c1004275	All Organisms → Viruses → Predicted Viral	2046	Open in IMG/M
SI36aug09_200mDRAFT_c1007115	All Organisms → Viruses → Predicted Viral	1279	Open in IMG/M
SI36aug09_200mDRAFT_c1008069	Not Available	1146	Open in IMG/M
SI36aug09_200mDRAFT_c1011774	All Organisms → cellular organisms → Archaea	834	Open in IMG/M
SI36aug09_200mDRAFT_c1011821	Not Available	831	Open in IMG/M
SI36aug09_200mDRAFT_c1013424	Not Available	757	Open in IMG/M
SI36aug09_200mDRAFT_c1013436	Not Available	756	Open in IMG/M
SI36aug09_200mDRAFT_c1013720	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	744	Open in IMG/M
SI36aug09_200mDRAFT_c1013760	Not Available	743	Open in IMG/M
SI36aug09_200mDRAFT_c1014395	Not Available	719	Open in IMG/M
SI36aug09_200mDRAFT_c1015692	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Gaprivervirus → Escherichia virus VR7	677	Open in IMG/M
SI36aug09_200mDRAFT_c1015885	Not Available	671	Open in IMG/M
SI36aug09_200mDRAFT_c1017992	Not Available	616	Open in IMG/M
SI36aug09_200mDRAFT_c1018079	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	614	Open in IMG/M
SI36aug09_200mDRAFT_c1018189	Not Available	611	Open in IMG/M
SI36aug09_200mDRAFT_c1018363	Not Available	608	Open in IMG/M
SI36aug09_200mDRAFT_c1019532	Not Available	583	Open in IMG/M
SI36aug09_200mDRAFT_c1020893	Not Available	558	Open in IMG/M
SI36aug09_200mDRAFT_c1021639	Not Available	545	Open in IMG/M
SI36aug09_200mDRAFT_c1021749	Not Available	543	Open in IMG/M
SI36aug09_200mDRAFT_c1021883	Not Available	541	Open in IMG/M
SI36aug09_200mDRAFT_c1023056	Not Available	523	Open in IMG/M
SI36aug09_200mDRAFT_c1023335	Not Available	519	Open in IMG/M
SI36aug09_200mDRAFT_c1023879	Not Available	512	Open in IMG/M
SI36aug09_200mDRAFT_c1024613	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI36aug09_200mDRAFT_c1003570	SI36aug09_200mDRAFT_10035701	F058917	MDKLLKALEKESKDIRSADMVVNGKIHQIYYRIMSGDDHAXALELSKKTKNIKETDGSTTELTYYDDDLLRCXIIYFQLLXKXGSRVFTDLPKIQWIKDNITYETASYLAAVMGLKSVSDIVEEQQEALKKMNG*
SI36aug09_200mDRAFT_c1004275	SI36aug09_200mDRAFT_10042754	F058066	MSMFKKKDGFDKDGIPTDEANVLAAQRWDNVLNEIIYGLKCAKKLQDMDYNYKDKKLTKRLTKSSQRSFELIGKHLFSLWD*
SI36aug09_200mDRAFT_c1007115	SI36aug09_200mDRAFT_10071151	F023708	MISLKSMLKTVKEAKIAKPRKGRETPLDSKVQIPGFGVMTR
SI36aug09_200mDRAFT_c1007686	SI36aug09_200mDRAFT_10076862	F005649	IECNTSLSTTCYNRLTNSNGDNSLDGLVVDWHLANSEMGFDNYVEPTSDYQSTYALAA*
SI36aug09_200mDRAFT_c1008069	SI36aug09_200mDRAFT_10080691	F068917	FKSEKDAKNQLNGLDWQFRGNYKIVKLKESVNEKISKDEWSEYPKYARKLKPYMKRLLKVPVKVRVIKQANHNPWIEVRVARFGKDVIPNDFRLKAAKVIGATSIKDKSNVNYGNIRSNSVSMKHDQWVKLLGRKV*
SI36aug09_200mDRAFT_c1011774	SI36aug09_200mDRAFT_10117741	F063751	RYLSGPEEYASIMANELRDDTPPLAPKQRMYGIHGFHRKQEYTIPPETSNFHSTSETLIKPTTPPEGTKSGGIDPTPEPGSKEMGSASGYRQVQKGGQSIFAKNEKLWGKWVDHRIGGRVDSREWKGNKLVDLLPKGKK*
SI36aug09_200mDRAFT_c1011821	SI36aug09_200mDRAFT_10118213	F078582	MKLNYFNFNNYSSSIATQSLQAAAPFLTGSNPEYWTGKGNNHGVIAGYDWVPSSGSLKLLELNTNIQTPPETNFLDSAVTWWKANNYDTIVLVTRNEEGTVIPSLNLVGDITASL
SI36aug09_200mDRAFT_c1013424	SI36aug09_200mDRAFT_10134241	F072434	GKKGSVWWNEILIYGAKIKEIFVMSRVAKDLDWSVTERGKLEKLASLATGNDPITVGTPTKYRKWYTDRKGVFDDV*
SI36aug09_200mDRAFT_c1013436	SI36aug09_200mDRAFT_10134361	F005649	HKYGAEWYRQMLFNNRVQQSLSKTRKKRLNNQNSDKSLAGLVIDWHLANTEMGFDNFVEPMISDYQPTYANA*
SI36aug09_200mDRAFT_c1013720	SI36aug09_200mDRAFT_10137201	F025141	TILYYMIQCEFCTRGFIETANGLAEKTFHELLHEPTIVNK*
SI36aug09_200mDRAFT_c1013760	SI36aug09_200mDRAFT_10137601	F042172	KISKETENTGKHDSKTFFIKELRIVNLEVKARVSSVKRDFLNKKIPLIVIKNIGSESKGASPEIILEKIILNVDDDLEDIFDFTTLKTDIKKNINRLLDKLSGEKKDNSGKEKIDHQKVINNLKDLF*
SI36aug09_200mDRAFT_c1014395	SI36aug09_200mDRAFT_10143953	F009560	FEENRKSFLDSLFSISTLLKRWHTEIQNKDVDKNYMIEKLTLWIKKLEKLRHDIMMRKS*
SI36aug09_200mDRAFT_c1015692	SI36aug09_200mDRAFT_10156921	F091863	MTMYELKCSKCDTIKTYTNKRSWYNARRCKSQCKPCQNKESSTYWKGRTKPNYPKKTNGKTTDGDWDRNCPDCNKVLYYSSKWGRDDAERNGRICNQCSAYKYKKSWNNVITDDHIKKMRATKAGFTSWEEYKQKYPSKKMYQNEVRRLTRKQPLHILPNYSKLEENWGKMGEDGAYQIDHIISINKGWKDMIPAEEIANITNLQVMKWEDNLRKH*
SI36aug09_200mDRAFT_c1015885	SI36aug09_200mDRAFT_10158851	F070155	MNLEYTQMQSNLFYLKNNFTLETLVSWGFISQLLLVIMVIGMAFLVENLIRKKLKKNHEKSLKQKDIFKIFRPILMLSVLFAAMYFMREGELEWRLLYFANSVLIILVFVRLAIILTRHILKPGPWLRAFENIFAGIVVLGYLALQFGIVKQIQDRLHSIKFEIGKESFTLL
SI36aug09_200mDRAFT_c1017992	SI36aug09_200mDRAFT_10179921	F010921	MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANXEHKGSELQKVMQVTYKLREEYKLIVEHNT*
SI36aug09_200mDRAFT_c1018079	SI36aug09_200mDRAFT_10180791	F006959	MYYETQVVFTEEIDTKNGVKEKKVRRNYLXECDSVSVAEAKVTEFLKDSAFFFEVKVAK
SI36aug09_200mDRAFT_c1018189	SI36aug09_200mDRAFT_10181892	F071312	EEIKSVLTEATATTEWTKDEIALIKRTKVKVDGKMHKFSIEKDGGKNKVAKFDVKHKENPSYGIIEKYLIKGKTSYDGFFSGYVGQGMGWKSSEVKPSKEFDEEQNLKLLATQFKKLQTIINRVW*
SI36aug09_200mDRAFT_c1018363	SI36aug09_200mDRAFT_10183632	F089397	MTVIDYLIKKFDGVMIDDYGWEHYKVDGKDYDIRFDRSRMEWACDC
SI36aug09_200mDRAFT_c1019532	SI36aug09_200mDRAFT_10195322	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGIKVL
SI36aug09_200mDRAFT_c1020893	SI36aug09_200mDRAFT_10208932	F074007	MNIEERVYGKYGNNLTYKDELLDIVDKLGGQLLFFMHISRWDLPLKNRWLDYFKYRFKPDKKFYIIFEEEEFSTHTVLDLDMVVEFFKENGVDKDKLIWVTASHNFNDVLKRFNKYIEVKPIPLHWGDSRFMKEDTVKSIVKDKIINYDVKSFGFN
SI36aug09_200mDRAFT_c1021639	SI36aug09_200mDRAFT_10216392	F007138	MIDKTIKLAGEYPSDFKPTPTVLEIHQYFNAHSFHNGRMIGGSKSVYRNMHPDDLIIFNANVLMPGYGKVWYGDLNLTEDYLVLREIAQNLNTDLYVLWETDGRFGLEMKPLNELFDKAVWNTSE
SI36aug09_200mDRAFT_c1021749	SI36aug09_200mDRAFT_10217491	F063083	MSTWQLVCGEEVIDTVSLKTDNYEEAHSYFRLRKNLDNDTFNKLFIVKEYT
SI36aug09_200mDRAFT_c1021883	SI36aug09_200mDRAFT_10218831	F022750	MNHRDIQNSLDNLGCLTMWVSMAFHLGVQEAKGEYVVLQHNDTFYHQDCIDEMIIEMEKEELEYISVDNKKIWISTYLLNKDFLDKYIKEYSLQPVVIQPDNGGYIKTKKIGFADAYFFLCKRKFFDIYNIDWYYGDTNHGATIYCLYNDLKYLHLGPYYDNPNWETEDTLHTYYYKDE
SI36aug09_200mDRAFT_c1023056	SI36aug09_200mDRAFT_10230562	F010921	MALNAKGGVKIIEGKAYIHPLSIQEIEFLLNLLANAEHKGSELQKVMQVTYKLREEYKLIVEHNTQNIKVQNYRR*
SI36aug09_200mDRAFT_c1023335	SI36aug09_200mDRAFT_10233351	F007138	YPSDWKPPSTIADIQQTFEAHNFFDGRMLSGSKTGYTIERPNNLILFNANVLMKDIGKVWHGDLNLTADYXVXKDIAKSLNTTLYVLWESDGRFGEEDKPLTALLDKAVWSTD
SI36aug09_200mDRAFT_c1023879	SI36aug09_200mDRAFT_10238792	F103400	LATPPDGTKLSLGKLGRATAVGNSDYISKTSLNSSARDSGTGKVSLSDFYISAIDNTLNGYPYVDEQTNEIYEMTFTNENSLF
SI36aug09_200mDRAFT_c1024613	SI36aug09_200mDRAFT_10246133	F008692	CWRNKMKTKREIEKETSYMPSSEEEFQADLDAXDMRYHQYCREQQEMYDDDYMNWSGKR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000155: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 200m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences