3300000147: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 150m

Overview

Basic Information

• IMG/M Taxon OID: 3300000147
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054201 | Ga0026212
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 150m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40969333
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet 54, Vancouver Island, BC, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001887	Metagenome / Metatranscriptome	622	Y
F029271	Metagenome / Metatranscriptome	189	N
F031649	Metagenome	182	Y
F059474	Metagenome / Metatranscriptome	134	Y
F060973	Metagenome / Metatranscriptome	132	Y
F091863	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SI54feb11_150mDRAFT_c1011221	Not Available	664
SI54feb11_150mDRAFT_c1012354	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	625
SI54feb11_150mDRAFT_c1012457	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	622
SI54feb11_150mDRAFT_c1014471	Not Available	570
SI54feb11_150mDRAFT_c1015640	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	544
SI54feb11_150mDRAFT_c1017145	Not Available	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
SI54feb11_150mDRAFT_c1011221	SI54feb11_150mDRAFT_10112212	F029271	MSKLSDLQDIKELLDVDFRKDKFLDNQYNNSPSFNYDAAESYVANIHQFXSEKYGEAVIYNFMQEVESLRITTLKMYIESNIASYQKFGAQK*
SI54feb11_150mDRAFT_c1012354	SI54feb11_150mDRAFT_10123541	F091863	LILITIRKGVMTMYELKCSKCDTIKTYTNKRSWYNARRCKSQCKPCQNKESSTYWKGRTKPNYPKKTNGKTTDGDWDRNCPDCNKVLYYSSKWGRDDAERNGRICNQCSAYKYKKSWNNVITDDHIKKMRATKAGFTSWEEYKQKYPSKKMYQNEVRRLTRKQPLHILPNYSKLEENWGKMGEDGAYQIDHIISINKGWKDMIPAEEI
SI54feb11_150mDRAFT_c1012457	SI54feb11_150mDRAFT_10124572	F001887	RIAKPRKGRETPLDSKVQIPGFGVMTRKQMQGSIQRYLKEVTNYIKKGDAEKAYNTLYKREVLKGFLETEIKHSGK*
SI54feb11_150mDRAFT_c1014471	SI54feb11_150mDRAFT_10144712	F060973	LSNKRYLSILDEIKKHGGEEGNTENPNENILLVDGLNLFIRCFSVIP
SI54feb11_150mDRAFT_c1015640	SI54feb11_150mDRAFT_10156403	F031649	EELMEKVKNMLMGLVLVAMMYMLLVIAFILDGAPFHP*
SI54feb11_150mDRAFT_c1017145	SI54feb11_150mDRAFT_10171451	F059474	IKVVSTDDPAIDLANSDIAAYIDSHDMNHLSFIDGEQPTTFHLGTITFMKFAEIKDKHISFDIGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*