3300000144: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1000m

Overview

Basic Information

• IMG/M Taxon OID: 3300000144
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054025 | Ga0026199
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1000m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17957835
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: P4, Pacific Ocean
• Coordinates
  • Lat. (^o): 48.65
  • Long. (^o): -126.666667
  • Alt. (m): N/A
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F100407	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LPjun08P41000mDRAFT_c100010	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10235

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPjun08P41000mDRAFT_c100010	LPjun08P41000mDRAFT_10001013	F100407	MTRPYYISATIIPLFYSLIGVIFLFAPEIPSTDISPAEKMMKIPLLFTQEIGVLFLIIAIFFRQIFNISRETYLLMNNTFKLALFVLALIAPYLYYYTKAPQLWVIFGINIFFICLLQYEKNQSKK*