3300000135: Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 03_9.5m

Overview

Basic Information

• IMG/M Taxon OID: 3300000135
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053469 | Ga0026117
• Sample Name: Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 03_9.5m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107809070
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: S1 site, Potter Cove, King George Island, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -62.230512
  • Long. (^o): -58.656117
  • Alt. (m): N/A
  • Depth (m): 9.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F000948	Metagenome / Metatranscriptome	823	Y
F020013	Metagenome / Metatranscriptome	226	Y
F036294	Metagenome / Metatranscriptome	170	Y
F050639	Metagenome / Metatranscriptome	145	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
KGI_S1_ANT03_95mDRAFT_c1011527	All Organisms → cellular organisms → Bacteria	1154
KGI_S1_ANT03_95mDRAFT_c1015329	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	979
KGI_S1_ANT03_95mDRAFT_c1031646	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	643
KGI_S1_ANT03_95mDRAFT_c1037431	Not Available	585
KGI_S1_ANT03_95mDRAFT_c1037997	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	580

Sequences

Scaffold ID	Protein ID	Family	Sequence
KGI_S1_ANT03_95mDRAFT_c1011527	KGI_S1_ANT03_95mDRAFT_10115271	F050639	MLRWMWRELETGLRNTLNGHEEGNLGYSQGYSLRVTAPVLDPTGE
KGI_S1_ANT03_95mDRAFT_c1015329	KGI_S1_ANT03_95mDRAFT_10153291	F000088	MKYTGIIAIAALVTGSSAVELRQRSSFAPPALGPYASDTDHLSNECYGADDDDIIYDVFDRYRVEERNPVGAGTGIWKLPKASGPQWASDVIRRFHVMDDDKVNAYVAANFDNFWKKYDNNGTGEIYESEGEVFLRALLGPNNRYRLAPGALSDMDSASLHVQNEFSAGPDGRPYAHRYELKDQDYPDGRHNLQ*
KGI_S1_ANT03_95mDRAFT_c1015397	KGI_S1_ANT03_95mDRAFT_10153971	F000075	IKLFKMKFVALTAFVAAAAANQYDFMGEDELLSQLSSTLVSAQRSEAMGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
KGI_S1_ANT03_95mDRAFT_c1031646	KGI_S1_ANT03_95mDRAFT_10316461	F000948	SQTVAVPIDEKRALTVKVSPTYVLDEINSVTLKSFRKIVGYDTFESIRRKNRNESKDTSDYYNVTVSMMVRRXPAEASAAPARDPYAPDGAPSLAATLDKGFPYDD*
KGI_S1_ANT03_95mDRAFT_c1037431	KGI_S1_ANT03_95mDRAFT_10374312	F036294	MDRGSTDEAVVGVKPIADEGVVTHLRIKLLESDKDVGAEGRNM*
KGI_S1_ANT03_95mDRAFT_c1037997	KGI_S1_ANT03_95mDRAFT_10379971	F020013	REYSQHTLLRAFKVVNYFWMQIFHVYGTARPIGSKFFTAYGNGPLNYSALFCYFWCTAMVLARCRFENQRDAYTFNDQDGANFWFDKYNMMFPPSFLHNRLSAHYIEINNIFFCEMLKKYIVARKELLVERDTCSMEEHRTKYISNPNYIYEPFRNDTVVIKRLRQDGQF*