3300000132: Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 05_23.45m

Overview

Basic Information

• IMG/M Taxon OID: 3300000132
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063447 | Gp0053476 | Ga0026114
• Sample Name: Marine microbial communities from chronically polluted sediments in Antarctica - King George Island site S2 sample ANT 05_23.45m
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 194499958
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus kandeliae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: S2 site, Potter Cove, King George Island, Antarctic Peninsula
• Coordinates
  • Lat. (^o): -62.231932
  • Long. (^o): -58.655087
  • Alt. (m): N/A
  • Depth (m): 23.45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F008782	Metagenome / Metatranscriptome	328	Y
F012678	Metagenome / Metatranscriptome	278	Y
F018541	Metagenome / Metatranscriptome	234	Y
F034189	Metagenome / Metatranscriptome	175	Y
F048318	Metagenome / Metatranscriptome	148	Y
F057384	Metagenome / Metatranscriptome	136	Y
F073087	Metagenome	120	Y
F073960	Metagenome	120	Y
F084255	Metagenome / Metatranscriptome	112	Y
F096047	Metagenome	105	Y
F097365	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
KGI_S2_ANT05_2345mDRAFT_c1003931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus → Acuticoccus kandeliae	4258
KGI_S2_ANT05_2345mDRAFT_c1010893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Anderseniella → unclassified Anderseniella → Anderseniella sp.	2127
KGI_S2_ANT05_2345mDRAFT_c1025501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1109
KGI_S2_ANT05_2345mDRAFT_c1031338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	951
KGI_S2_ANT05_2345mDRAFT_c1041583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	778
KGI_S2_ANT05_2345mDRAFT_c1048997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	697
KGI_S2_ANT05_2345mDRAFT_c1057799	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	626
KGI_S2_ANT05_2345mDRAFT_c1058981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	619
KGI_S2_ANT05_2345mDRAFT_c1064284	Not Available	586
KGI_S2_ANT05_2345mDRAFT_c1066269	Not Available	575
KGI_S2_ANT05_2345mDRAFT_c1067760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	567
KGI_S2_ANT05_2345mDRAFT_c1072210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales	545
KGI_S2_ANT05_2345mDRAFT_c1078353	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	518
KGI_S2_ANT05_2345mDRAFT_c1082769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	501

Sequences

Scaffold ID	Protein ID	Family	Sequence
KGI_S2_ANT05_2345mDRAFT_c1003931	KGI_S2_ANT05_2345mDRAFT_10039315	F073087	MNTQHQTSFTKAIIGSTQRLFRSNKNHSLLANNHINARTMRDIGIDQFGWN*
KGI_S2_ANT05_2345mDRAFT_c1010893	KGI_S2_ANT05_2345mDRAFT_10108934	F073087	TSFTKAIIVSTQRLFRSNKNHSLLATNCIDACTARDIGFNPVGQF*
KGI_S2_ANT05_2345mDRAFT_c1025501	KGI_S2_ANT05_2345mDRAFT_10255011	F018541	MYSPTMRSFWVDFPLNAEQYSKLKLKWRRRQNNYEIQNPLPELRIRSFCTFGGDDYQIISLEVRGGVDDYHAALNVMDKWIVETLGEY*
KGI_S2_ANT05_2345mDRAFT_c1031338	KGI_S2_ANT05_2345mDRAFT_10313381	F048318	PGYSDIAYSYELHPSELDCAWKREYTMSTDLWGEDMIDDDVLAWEKDEHKVKFDDSGPCEPIKVGRVFEVETKVLDEDLFGDDEVYLMVEASSGLGSDAAGEDPVMGRSNTVIGDF*
KGI_S2_ANT05_2345mDRAFT_c1041583	KGI_S2_ANT05_2345mDRAFT_10415831	F084255	MESSKRYLLQAEIEYWHEMLYLNKSRMSKNREEETRACLKKAVRSMNTNSIRDFRVAA*
KGI_S2_ANT05_2345mDRAFT_c1048997	KGI_S2_ANT05_2345mDRAFT_10489972	F057384	MIHKRMDEASIDTALDAYLHGAKEGDFKQAQQLHEMLDFMLTEREIPDGQLWLTEHGKLLLADMHRQLSHCEGDTDQLRDTVLEAVQLKPNQGKWKDTCSYVRDLKIAITVANELCEQRGAGRNPDITEAAKAVADSGEFGLDTSRICEVYDEIASTVGGFREFS
KGI_S2_ANT05_2345mDRAFT_c1057799	KGI_S2_ANT05_2345mDRAFT_10577991	F001506	EELSINKKRSSSNRSEGKPLQYPKPNEITSKTFQIKYEKELSSIAKFILNSFQNKYIYYAIDDILYLLKSNPIERENLLAIIYSPVLSLQNNFSINFFDIWIHEIYINEVSKINKFITNDSQNLEQFSYITIKLLYKTRVPIKKQDSLW*
KGI_S2_ANT05_2345mDRAFT_c1058981	KGI_S2_ANT05_2345mDRAFT_10589811	F048318	ENVHLAITASTTKPGYSDIAYSYELHPSELDCTWKREYTMSTDLWGEDVIDDDILACDKDEHKVKFDDSGPCEPIKVGRVFEVXTKVLDEDLFGDDEVYLMVEARSGLGSDAAGEDPVMGRSNTVIGDF*
KGI_S2_ANT05_2345mDRAFT_c1064284	KGI_S2_ANT05_2345mDRAFT_10642842	F034189	MTTNLAKWASNNGQIIKSGLSDGRRVYFLPSVVGVVYDWLRIGGHLGNV
KGI_S2_ANT05_2345mDRAFT_c1065854	KGI_S2_ANT05_2345mDRAFT_10658542	F073960	MDDAQQLPNDLVECQQLLLAAFKQASELERVLDETAASHEELIEKHEATVDELNALKRWI
KGI_S2_ANT05_2345mDRAFT_c1066269	KGI_S2_ANT05_2345mDRAFT_10662692	F008782	MKKPIFRVFVSYEIKNKGAVTRKVTTGILDTFALTSNIQEIKNDQELIDRICYLNKKKLNKVDITITSVDVENQYGETVD
KGI_S2_ANT05_2345mDRAFT_c1067760	KGI_S2_ANT05_2345mDRAFT_10677601	F048318	MATVENVRLAITASTTKPGYSDIAYSYELHPSELDCAWKREYTMSTVLCGEDVIEDDVLAWGKDEHKVKFDDSGPCESIKVGRVFEVETKVLDEDVFGDDEVYLIVEARSGLRPD
KGI_S2_ANT05_2345mDRAFT_c1072210	KGI_S2_ANT05_2345mDRAFT_10722101	F012678	MLNQHSLEEIADIHNLLVDIKKEYEKGIKPILIKNNPKFFRNPHTVPKLKKIQINR
KGI_S2_ANT05_2345mDRAFT_c1078353	KGI_S2_ANT05_2345mDRAFT_10783533	F096047	KLKRLSSPIYRVIIEYGYRKKGSVRHYKYKIIDTFALTSDVDMIRKDKEVNAKILRQLKSGNKEMDIMFKSIYVEGQYGNTNY*
KGI_S2_ANT05_2345mDRAFT_c1082769	KGI_S2_ANT05_2345mDRAFT_10827692	F097365	MVNKSDWQEMKRHAFDAFARDGRMSVSELENIVNIGVADGEFDEQEKAVLINIISNLTRADMNDAMWLKVDELIHKFDLHDDSEAFIEHLDDDNEY*