2236876011: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m

Overview

Basic Information

• IMG/M Taxon OID: 2236876011
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047387 | Gp0054212 | Ga0011261
• Sample Name: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-3LG-Hyp-75m
• Sequencing Status: Permanent Draft
• Sequencing Center: University of South Carolina
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83976010
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → unclassified Muricauda → Muricauda sp. TMED12	1
Not Available	11
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine And Estuarine Microbial Communities From Columbia River Coastal Margin
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → estuary → estuarine water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Newport Hydroline 10 km (NH10)
• Coordinates
  • Lat. (^o): 44.651
  • Long. (^o): -124.295
  • Alt. (m): N/A
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000787	Metagenome / Metatranscriptome	891	Y
F000948	Metagenome / Metatranscriptome	823	Y
F001217	Metagenome / Metatranscriptome	745	Y
F002730	Metagenome / Metatranscriptome	534	Y
F006114	Metagenome / Metatranscriptome	381	Y
F012720	Metagenome / Metatranscriptome	278	Y
F012917	Metagenome / Metatranscriptome	276	Y
F017650	Metagenome / Metatranscriptome	239	N
F018173	Metagenome / Metatranscriptome	236	N
F021962	Metagenome / Metatranscriptome	216	Y
F041186	Metagenome / Metatranscriptome	160	Y
F042568	Metagenome / Metatranscriptome	158	Y
F052545	Metagenome / Metatranscriptome	142	Y
F055210	Metagenome / Metatranscriptome	139	Y
F055215	Metagenome / Metatranscriptome	139	N
F060358	Metagenome / Metatranscriptome	133	N
F063840	Metagenome / Metatranscriptome	129	Y
F080526	Metagenome / Metatranscriptome	115	Y
F091209	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
none_p024458	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	502
none_p072133	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Muricauda → unclassified Muricauda → Muricauda sp. TMED12	503
none_p080277	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	510
none_p081492	Not Available	520
none_p084036	Not Available	555
none_p092652	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	514
none_p100140	Not Available	526
none_p101647	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	512
none_p113572	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	506
none_p141005	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	511
none_p156162	Not Available	521
none_p166071	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	514
none_p169359	Not Available	514
none_p171374	Not Available	507
none_p171836	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	500
none_p176674	Not Available	502
none_p197041	Not Available	506
none_p200003	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	506
none_p200878	Not Available	503
none_p211390	Not Available	509
none_p224308	Not Available	529
none_p243185	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
none_p024458	none_0244581	F006114	NDPAAQLQGLMNAQASLHRLTANFSNKPNLDKVTGMAQKLGIPMTPELMQLGSNEAISNALVEIAVGMGKSEAEIGKALGPDM
none_p072133	none_0721332	F055210	MLDLTTTFSKPNSIVTPFLRSFMGTFQVGIRNTISDKVFPTSSAVHNMYVKAFDIEEAYDIAMEIIKPYDMIVKDIVAPGDEI
none_p080277	none_0802772	F002730	LEGLDGVLEDWLNRLHDTESSLHIVDLWLHAFDGLHLSGDLNEWLSIIKSLEDSGGKSFWMFLMAAVLANSGVS
none_p081492	none_0814921	F018173	VNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTPTTPTTGNVELQ
none_p084036	none_0840361	F012917	NNVLNGMVLLKFLRFPLNDSGYYEKYDSLEEISQVWDRKKHLRRKRWSQE
none_p089037	none_0890372	F000155	MKFACALIATVAANQYDNMNEDELLVNLSSTLSSALSSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP
none_p092652	none_0926521	F041186	YETIPDYNRIYCDCEDIVEDAITRHYEDLLCKMENEIIDELLDEGYNHKIVNPINALQYIEMISQDDQFNKDLPKLYIGHINITVDEDYRYLNYASQIIKDRNRYEIVANHYGLTIERAVKGELIFNELKDEN
none_p096394	none_0963941	F000075	MKFTLLVAAVAATKYDSMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVRRCQRNGQEMRCFMTP
none_p100140	none_1001401	F001217	MSKTKFNGFEKYFIQTALKHAIEEAEKDVLAAEADGKRSIYAPGYFTLVGNEIIDKVNSMTLKKYQN
none_p101647	none_1016472	F000787	MKFTIIALVATVSAGLPPSAGLGHPIIPATREDFDNAKGVWKGDWASYRSAHPNDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTHFQTKLQASLLTADRKSSVIV
none_p113572	none_1135721	F021962	LPPQFTPRSKHYAIKTVWFREQIVTRGIVLVKIDTV*QLGDMFTKGLGKVPFEYLRKKIMGW
none_p141005	none_1410052	F000948	GYDTFESIRRKNRSESKDISDYYNVTVSMMIQRKPVEAAAAPAKDPYNPEGNPSLSTTLDKGFPYDD
none_p156162	none_1561621	F018173	YTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTPTAPTTGNVEITASLSATG
none_p166071	none_1660711	F017650	MKFFALAALTATVTAVTIRGDFFEARDNGTGPLDKKYERVLPVQFADASDDLFMRSMIMNYAREGKNEDGSPNGVFTMTEAQTRGASAEVLGTHKKMDAGATKEYLNTYFPRTWAHFDVNKAGFVGVEVMATIRQI
none_p169359	none_1693591	F018173	YPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQVVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGVMDL
none_p171374	none_1713741	F063840	MDGYALCDHLSEQLSRGIGGYFENFSSSVSRISEETYSQQAVYLSYTSP
none_p171836	none_1718361	F012720	FDIPIDEVKAITLNRRPTYDLDHVESVTLKSFRKVVGYDTFNSILKKDRDEKKDQSDYYNVTVSMMIRRIPEDVAHPPTHDPYNPTGVTLTSTLDKGFPYDDGDNTTDDQTPNWKSQARPKSSQLVGKLNGENITKDALVNLIRDTDAPITQSLLFLDESKADSDN
none_p176674	none_1766742	F055215	MKINDILKLPSIEIGDEILVGKFKNRKATVTGFAVDDNNQPVLKTTKGDQKLFNLE
none_p197041	none_1970411	F018173	GLELTLSIDRLKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGVDSVDTSDTTFIDMTP
none_p200003	none_2000031	F042568	MCSFLSHSSDINDLLEGFDGVLEDWLNRLHDTESSLHIVDLWLHAFDGLHLSGDLNKWLSIIKS
none_p200878	none_2008781	F091209	MYKTIGLNLFLFTLIFYKYLEPRSAVKKLEDAGLIDNISELEDSAFPFVAINNIIPT
none_p211390	none_2113901	F060358	MDDNLESVVAAVGLFIDNILHDMKNVSKSTTKPVILAHIDAWKNELETIK
none_p224308	none_2243081	F052545	MSTDSSIMIRTPFKAKEFDGNKEDDQLDAGAWCLGRMGGSWVPAMYLCGTQSEAEGIRDEFLESMVEDEDDCQP
none_p232055	none_2320551	F000075	MKFFALVAAVSASQYDSMTEDELLINLESTLSSAQRSEARSDGDAAVAKTAAIKNIQKALTARILKKIDDRQPLVEVARKMKAIEGMQPQINDMREDSVFXNRIVLGIMQSVKP
none_p243185	none_2431851	F080526	MPNPLLPIAGAVVGVGTGTMISESALMTPKTIGLFYVGIAKTCYTSTGSKRIACAVAALACGTALIPGPHQGPFIVACAAASRGANKL