NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236876003

2236876003: Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p8-ETM-15m



Overview

Basic Information
IMG/M Taxon OID2236876003 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0047387 | Gp0054171 | Ga0011256
Sample NameEstuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-0p8-ETM-15m
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of South Carolina
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size53516835
Sequencing Scaffolds59
Novel Protein Genes62
Associated Families54

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available38
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → unclassified Bowmanella → Bowmanella sp. JS7-91
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM012
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine And Estuarine Microbial Communities From Columbia River Coastal Margin
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biomeestuarysea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationColumbia River estuary, South channel near Astoria
CoordinatesLat. (o)46.249Long. (o)-123.986Alt. (m)N/ADepth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F002501Metagenome / Metatranscriptome553Y
F002739Metagenome / Metatranscriptome533Y
F002933Metagenome / Metatranscriptome519Y
F003647Metagenome / Metatranscriptome475Y
F005298Metagenome / Metatranscriptome405Y
F009204Metagenome321Y
F009682Metagenome / Metatranscriptome314Y
F010472Metagenome303Y
F010726Metagenome / Metatranscriptome300Y
F011374Metagenome / Metatranscriptome291Y
F013514Metagenome / Metatranscriptome270Y
F013702Metagenome / Metatranscriptome269Y
F015595Metagenome / Metatranscriptome253Y
F016531Metagenome / Metatranscriptome246Y
F016832Metagenome / Metatranscriptome244Y
F019105Metagenome231Y
F021976Metagenome / Metatranscriptome216Y
F022015Metagenome / Metatranscriptome216Y
F022639Metagenome / Metatranscriptome213N
F022869Metagenome / Metatranscriptome212Y
F028500Metagenome / Metatranscriptome191Y
F029677Metagenome / Metatranscriptome187Y
F029747Metagenome / Metatranscriptome187Y
F034108Metagenome / Metatranscriptome175Y
F038235Metagenome166N
F042310Metagenome / Metatranscriptome158Y
F042919Metagenome / Metatranscriptome157N
F043374Metagenome156N
F043409Metagenome / Metatranscriptome156Y
F043411Metagenome / Metatranscriptome156N
F043632Metagenome / Metatranscriptome156Y
F044497Metagenome / Metatranscriptome154Y
F045070Metagenome / Metatranscriptome153Y
F047649Metagenome / Metatranscriptome149N
F048170Metagenome / Metatranscriptome148N
F048825Metagenome / Metatranscriptome147Y
F056150Metagenome138N
F057151Metagenome / Metatranscriptome136Y
F057309Metagenome / Metatranscriptome136Y
F066524Metagenome / Metatranscriptome126Y
F066686Metagenome / Metatranscriptome126Y
F066790Metagenome / Metatranscriptome126N
F072520Metagenome / Metatranscriptome121Y
F073493Metagenome120Y
F073553Metagenome / Metatranscriptome120Y
F077986Metagenome / Metatranscriptome117Y
F081203Metagenome / Metatranscriptome114N
F085540Metagenome / Metatranscriptome111N
F088880Metagenome109N
F092025Metagenome / Metatranscriptome107N
F092079Metagenome / Metatranscriptome107Y
F101210Metagenome / Metatranscriptome102N
F105188Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
none_p007801Not Available505Open in IMG/M
none_p012276All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon535Open in IMG/M
none_p014370Not Available511Open in IMG/M
none_p016224Not Available514Open in IMG/M
none_p016755Not Available515Open in IMG/M
none_p017211Not Available543Open in IMG/M
none_p017430Not Available536Open in IMG/M
none_p017911Not Available508Open in IMG/M
none_p018299Not Available548Open in IMG/M
none_p018906Not Available526Open in IMG/M
none_p020317All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage515Open in IMG/M
none_p020439All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium526Open in IMG/M
none_p022401All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.510Open in IMG/M
none_p024984Not Available554Open in IMG/M
none_p025559Not Available529Open in IMG/M
none_p026644Not Available518Open in IMG/M
none_p031864All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage512Open in IMG/M
none_p031996Not Available540Open in IMG/M
none_p036425All Organisms → cellular organisms → Bacteria506Open in IMG/M
none_p040366Not Available507Open in IMG/M
none_p040790Not Available501Open in IMG/M
none_p041547Not Available531Open in IMG/M
none_p046302Not Available501Open in IMG/M
none_p047783Not Available501Open in IMG/M
none_p048066Not Available542Open in IMG/M
none_p048067Not Available514Open in IMG/M
none_p048641Not Available509Open in IMG/M
none_p049649All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria518Open in IMG/M
none_p053072All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage521Open in IMG/M
none_p053291Not Available520Open in IMG/M
none_p055125Not Available522Open in IMG/M
none_p056490All Organisms → cellular organisms → Bacteria558Open in IMG/M
none_p059448Not Available505Open in IMG/M
none_p062879Not Available530Open in IMG/M
none_p064140Not Available524Open in IMG/M
none_p064142Not Available508Open in IMG/M
none_p069591Not Available523Open in IMG/M
none_p070255Not Available519Open in IMG/M
none_p070430Not Available518Open in IMG/M
none_p074477All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Mamiellaceae → Micromonas → Micromonas pusilla516Open in IMG/M
none_p074558Not Available523Open in IMG/M
none_p076450Not Available527Open in IMG/M
none_p076674All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes512Open in IMG/M
none_p078217All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage538Open in IMG/M
none_p079395Not Available503Open in IMG/M
none_p080699All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage508Open in IMG/M
none_p084660Not Available511Open in IMG/M
none_p085033All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage507Open in IMG/M
none_p087520All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → unclassified Bowmanella → Bowmanella sp. JS7-9502Open in IMG/M
none_p087583Not Available506Open in IMG/M
none_p089270All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium514Open in IMG/M
none_p091280All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage507Open in IMG/M
none_p092274All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01523Open in IMG/M
none_p092796All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage507Open in IMG/M
none_p093112Not Available511Open in IMG/M
none_p094398All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01511Open in IMG/M
none_p098846Not Available505Open in IMG/M
none_p100669Not Available509Open in IMG/M
none_p118762All Organisms → cellular organisms → Bacteria → Proteobacteria507Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
none_p007801none_0078011F043632AIEGLDDAIIGSTIRNGREVLAYNYDKAVDLIIAAGHSEEYAEEWIAEVSSKEFDGAPAFIYVDNNQEFYGPSSPAGTTVH
none_p012276none_0122761F003647MIMCEWTLADVKNRASNKAFAKVTMLKLDIDDYKRSLVNGTYGGITYEEAEQVLEGYKTELKVWNYITELIEKQ
none_p014370none_0143701F077986MKEGTLVWIVASVEDDALQVNCDNDEIVVEPHGFRAMPLYADKQWVKPLTEEEIQ
none_p016224none_0162242F048825PRYQDPEDLDEDNTRGSTRELTEDLREELSSLKPTRRPAVEEDEDDDALSYFARLAEE
none_p016755none_0167551F034108MKFNPQLRKAIYAAVAGLVPLLVALGFLTDEQSQAILSSVAALLAFLASALAVNNTETNNPEGDFEDFEDVTEGTEPPHIPGV
none_p017211none_0172111F013514MSINLEELQKYLDDNNITFEEWMRKNMITDEERKYFDKIWVDAIYKNLGEDT
none_p017211none_0172112F057309MTNPLIDKYFELYPEKKEKPKLPRIEDYKGEETFADELKKLRDTSTIPVSKIKSYDLDDLKASFQQVAEQLQNDKAQVVSMNMEFGDYMNKITFEVYVYKP
none_p017430none_0174302F105188MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLTINAIGYYILKNKLD
none_p017911none_0179111F048170MYNYKGNSALLRQQARQQRRELSIKIVGWFAIGCGAIVGAGILYAFAVFVLAMG
none_p018299none_0182992F038235MIREILAPFERVTYVREDGNQAVYKVFRPTKHLFVNKKKDNGAVVGFRAWKMPDTGADERMGWRSFRFDRIASRKLTSSDFSRGLGNVWNSA
none_p018906none_0189061F009204MKTTIKYYTQNIYGVRREKFIDKKQESVFFQLTGRRTLDSVSRELIRDLSGSSIEFEQALPPE*
none_p020317none_0203172F010472MGQSNILHEVVTSGQPWAAERAQMALQVQEAVGSGQLSPSEAKEILQDLINTEKLEQEAADQQLRAALVFGVTQIISMY
none_p020439none_0204393F013702MDSRIVQDMEIVEREACYLIDTIEQSLERIVNYNDLTEEEMKSIKDMAIIML
none_p022401none_0224011F043374MFPSDPTFNELHIREKQMLLGAILIWLNDCAQYAETTQEQNDIINKIIDLVEVDRVMNYFIDYERSSMRFLNEARMINAKLKLENQEMKDTI
none_p024984none_0249841F073493MTKAEKRIHWRKIEEGEIPDDYQNPFLSHFGFMDYPLDDEQEKTRARAKR
none_p025559none_0255592F088880MRRHTENTAFIAMFVLVIVGAIAWGLYIRSTNNTIKVIDGCQYIRVYSGDGWNLIHKGNCTNIYHLKK
none_p026644none_0266442F009682MEKDLYLKDKYVIESDDLKFDGKNIIIPSYYASIVYDYLDNVNIKDMNLNDADMHDYLAFYSFFEAIIDYKADKGGN
none_p031864none_0318641F011374QDLKKTGNDLTKITGEVSGALSSFFKGHAELEAAHEKAEVQREDNRKKGIKDDLATQAIDNVMYLRQTKQFYADLERMVRWEMGQPDLWHEIVDEYQRLLDQKSEQAARELHEKRMKSWQRQRLKNKILDRFLETAAVVS
none_p031996none_0319962F029747MKYTLMLDTDTCTSFSTYPHTREGLDKALDRVDKVRSKDGFKCANIVSDRDGEVFALDMSLAIN
none_p036425none_0364252F042919MDRQPVFEFIHYPEFGEAERVCPAVKIVYTIYSEGQTVHDMREQFNYFLKACSYHIPLDEEE
none_p040366none_0403662F022639MAKRIYEFICGDDHLTEAYIDSELRTTNCKVCGQPAIRIVSKPMVKLEGVTGDFPGATMQWERKRNEKMAQEERVPLNSTST
none_p040790none_0407902F043632LIYAMVDIEVLAIEGLDDAIIGSTIRNGREVLAYNYDKAVDLIIAAGHSEEYAEEWIAEVSSKEFDGAPAFIYVDNNQEFYGPSSPAGTTVH
none_p041547none_0415471F073553MTEQEFYAQIQEDYYREFAGSELSQIFIVTDAHDEFF
none_p046302none_0463022F005298SGLSMVTIICLGIMYMSFDNAFVFTDTEISVTNNPVTAERDIEFYMIGSKKYQCNSTAAYGIAHALDGSQSYKLTTFTKRYIQATTPGDAVENGWHMKVPDDMKKGGEYRVSMTGEFNCVHLIFKTHKVQEFANIYLKVDPR
none_p047783none_0477833F028500MYEIRTKWSNMVVYRTTERANAVFWLEENNQEGIFKLVKVK
none_p048066none_0480662F045070MAKERVQVQGLGGAVPGIQPTIQRAGQYAVAQLRAAPVPVPRSKLLDLADTLKAGQDVLQQYGLAAKQEAEIFEDELSRKSPEEVQA
none_p048067none_0480672F101210MGISVANIPWHNLQPNLFIDTMVKSAGVLNRFRLIDGVKSKVNVPIFDAALNFGNDLCVFDASSSAAIADKEMTVETYKWSFLNCKSVLEATYRSVLL
none_p048641none_0486411F022015TWQQAFDEMNASVLKHEIITAIASEVVGKPVENLIGFTDEQRDLVWNDYYNTTELCG
none_p049649none_0496491F043632MVDIEVLAIEGLDDAIIGSTIRNGREVLAYNYDKAVDLIIAAGHSEEYAEEWIAEVSSKEFDGAPAFIYVDNNQEFYGPSSPAGT
none_p053072none_0530721F042310MAKLEVIEQYGYNEQGICINPFGIKPLWVQKLAERIRCNHVVTMAEEAPF
none_p053291none_0532911F010726LVFALIIVVNGEIQQNAKSYWQGLSRCRWYAEELTVQGTLRKYETPVHAYCVPEFVDPQKVTIYE
none_p055125none_0551251F073553MTEQEFYAQIQEDYYREFAGSELSQIFIVTDAHDEFFEFDDVPF
none_p056490none_0564902F043411LEKTKKEMLKRRLTYNNKRVYIKSLSSKIAIVSHTEEGNYKQFKVNIEDLVEFK
none_p059448none_0594481F000918MYKTNQQAWDEVTREFQESKRRTQICQEMFGQDNLIGLTTEQRDLFWESI
none_p062879none_0628791F010726VKQLVFALIIVVNGEIQQNAKSYWQGLSRCRWYAEELTVQGTLRKYETPVHAYCVPEFVDPQKVT
none_p064140none_0641401F092025MAEIINFEDVKDTPKFDPTKKYAWSPETSFTISGNDFGLLLNTLRSITSTKEAQTILLAHEAGDVLEKTLAHGVETGKIVEVPQQ
none_p064142none_0641422F072520KPCAQTSFIYYQYNSVANIMSSQSSLKESLVTELTDKVVTEDTAPTLTVGDKTYVVADLSNEVKEMLSLHEQAMQMAIGAKRQAVIHDLAVSNIASLIEKKLAETDE
none_p069591none_0695911F066686LIMKELQDIINDLQARLAIVGGGRIIITSDSVSIRLGEEHEDFEVQENQTDVEMYNQMWG
none_p070255none_0702551F019105VVVVEDNVQLTGENKKLTTANKRLTNSVNKLEAEKEDLIEDKENLQEMVSEVIGDLDSTRSVVKDIKKELANEKDIVRKQSTGKQFEFQPITLPTSDGD
none_p070430none_0704302F085540MNAFVLLLALLTFSATAAEIYLDDGRVIELPVGSKVYVDDGTVWTFTRFNEGGFDIRPLTPLVEITEVCPDDGFTFGGNSGSCVVEEVVTEETEEATCDGFTFGGSGC
none_p074477none_0744771F021976MVAEASRGVETRARKRKRDLDSQAGVAIPGLPFDVAVSIVEKHLPDPADLAVLRAV
none_p074558none_0745581F015595LKRAARIGELNGHPPGSDGQMATALKRYNGGRVLVFVMGAFAEMSGDVSRICDIIAHDLARTHVSYYNDDAKRTKGMYRKRIQKAWGHTAHRGWARLLLDRARDLITHGPAHRGANGAAMPTDEDDQDGHFFYNHPDRGGGLLCRLSARSPCYCCLDPIPPHSRGGE
none_p076450none_0764502F022869SNWKLVLGGKKKDLFGVSVEGSYGTDNSYGVAAEVDYKEMLIVEASHGVNNGVTNNSIAGKVKFRF
none_p076674none_0766741F057151AQIDESNIVTDVAVVHKDFLEANPDRYPGTWVETFFNLPNKTYAGAGFIYNPITKDFSPPPTPDPIPEA
none_p078217none_0782172F002501WKMQWQGFVDRVFSQKLHVELFCIMCGKRWMCNKETSAFGRWTKKKKKQTTLKNYGISS
none_p079395none_0793951F092079SIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALEGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMTLLGKTRTDDNSAST
none_p080699none_0806992F044497MFEWILIFALAKEPDVKKWPEWECVRWTWSGDVYNRRVVCLEWRKRTNRWIP
none_p084660none_0846601F016832MSNIKYNTRTFYVPADKLETLIKFQNKCKELGHKSYSKVLLKLMEEFNDG
none_p084660none_0846602F081203MMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLAIIDQVQWNKGILKRVKLSNNDLEIHKNRFSNLITEVVKISIELKELAINYNPKRMKQLIIILTK
none_p085033none_0850331F066524MATLGSLNYAQLVTAVTDYTQNTFDTTDMNTMIQQAEQRIYNTV
none_p087520none_0875202F048170MYNYKGNSALLRQQARQQRRELSIKIVGWCVIGCGAIVGAGMFYAFAVVVLAMG
none_p087583none_0875831F088880IIFVGMFVLVIIGAIAWGLYIRSTNNTIKVIDNCQYIRQYNGHGWNLTHKGNCTNTIHYK
none_p089270none_0892701F043409MQNEYIVSEPTEDITTDRNWCREQSDRLASWEILRRHVLHESGVQMTNADLCDTIGVSSTYTIRLLKSIQ
none_p091280none_0912801F066790MGLLKMLSNLMQRVRDMFKPYTLEDFIVDADPKDYKDIQRLESVWHNYQERKLF
none_p092274none_0922742F047649MRYYESRTYEHQCDFDAKNXAEKASQDYYKKWINLRKEVRNLVREQNLTITPEFSKLIGL
none_p092796none_0927961F002933MIPPLYKWYPMVQPGAEPTKTDALERRAEKLTEDYKQALKMKKVDDKIDALEFELYVKKAQRNQLSLEIFTNRKLDIYV
none_p093112none_0931121F015595PDYHKDEPPVAARQAEVARDYLKRAARIDELNGHPPGSDGQMVTALKRYNGGRVLVFVMGAFAEMSGDVSRICDIIAHDLARTHVSYYNDDAKRTKGMYRKRIQKAWGHTAHRGWARLLLDRARDLIIHGPAHRGANGAAMPTDEGD
none_p094398none_0943982F029677MTEPNTLGDSLKEWWASDACKELQKSNEEAKQRAVGKYFMLSESDKIDMVQAICLIMCKAESEGTSHRGLQDALGIYPGGFWGFGINDRT
none_p098846none_0988462F002739MAGGEKHVVYKRLVPQVLGKGKKGNIMVNHPTKDKGKWDTIDLTKIGRAKTVKQGVASTKKWHKDNPDYKYKGKKK
none_p100669none_1006693F066790MGLLKMLSNLMQRVRDMFKPYTLEDFIVDADPKDYKDIQRLESVWHNYQERKLFNNC
none_p118762none_1187622F016531MLLGIAGVSKLSQAAIRSGFDGSVVSNVNAPGRLILVGFMGSRLASQLIRRGESTVIIKDDDRSMDDKTNGRKPGDF
none_p119504none_1195042F056150MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLIDSLDGLDKIMMEQLLICSGNRNCLARKKRHP

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