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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2222084002 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050527 | Gp0053313 | Ga0011221 |
| Sample Name | Subtropical soil microbial communities from Bundaberg Australia-sugarcane farm |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Australian Genome Research Facility |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 23861439 |
| Sequencing Scaffolds | 29 |
| Novel Protein Genes | 34 |
| Associated Families | 25 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 20 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subtropical Soil Microbial Communities From Bundaberg Australia |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Subtropical Soil → Subtropical Soil Microbial Communities From Bundaberg Australia |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → land → silt |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Australia: Bundaberg, Queensland | |||||||
| Coordinates | Lat. (o) | -24.9 | Long. (o) | 152.39 | Alt. (m) | N/A | Depth (m) | 0 to .03 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000203 | Metagenome / Metatranscriptome | 1619 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F000734 | Metagenome / Metatranscriptome | 915 | Y |
| F001024 | Metagenome / Metatranscriptome | 803 | Y |
| F001232 | Metagenome / Metatranscriptome | 741 | Y |
| F001233 | Metagenome / Metatranscriptome | 741 | Y |
| F001633 | Metagenome / Metatranscriptome | 660 | Y |
| F001758 | Metagenome / Metatranscriptome | 640 | Y |
| F006338 | Metagenome / Metatranscriptome | 375 | Y |
| F007695 | Metagenome / Metatranscriptome | 346 | Y |
| F008512 | Metagenome / Metatranscriptome | 332 | Y |
| F012439 | Metagenome / Metatranscriptome | 280 | Y |
| F014312 | Metagenome / Metatranscriptome | 264 | Y |
| F017072 | Metagenome / Metatranscriptome | 243 | Y |
| F020615 | Metagenome / Metatranscriptome | 223 | N |
| F026908 | Metagenome / Metatranscriptome | 196 | Y |
| F030100 | Metagenome / Metatranscriptome | 186 | Y |
| F035116 | Metagenome / Metatranscriptome | 173 | Y |
| F049453 | Metagenome / Metatranscriptome | 146 | Y |
| F054015 | Metagenome / Metatranscriptome | 140 | Y |
| F063173 | Metagenome / Metatranscriptome | 130 | Y |
| F073595 | Metagenome / Metatranscriptome | 120 | Y |
| F082012 | Metagenome / Metatranscriptome | 113 | Y |
| F096832 | Metagenome / Metatranscriptome | 104 | Y |
| F102642 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| DRAFT_c105801 | Not Available | 521 | Open in IMG/M |
| DRAFT_c107918 | Not Available | 545 | Open in IMG/M |
| DRAFT_c114800 | Not Available | 504 | Open in IMG/M |
| DRAFT_c115576 | Not Available | 528 | Open in IMG/M |
| DRAFT_c116103 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 510 | Open in IMG/M |
| DRAFT_c134107 | Not Available | 527 | Open in IMG/M |
| DRAFT_c135472 | Not Available | 532 | Open in IMG/M |
| DRAFT_c143416 | Not Available | 517 | Open in IMG/M |
| DRAFT_c145360 | Not Available | 518 | Open in IMG/M |
| DRAFT_c16500 | Not Available | 553 | Open in IMG/M |
| DRAFT_c18921 | Not Available | 522 | Open in IMG/M |
| DRAFT_c20604 | Not Available | 508 | Open in IMG/M |
| DRAFT_c22876 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 501 | Open in IMG/M |
| DRAFT_c23854 | Not Available | 552 | Open in IMG/M |
| DRAFT_c26728 | Not Available | 503 | Open in IMG/M |
| DRAFT_c41928 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 535 | Open in IMG/M |
| DRAFT_c44377 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 546 | Open in IMG/M |
| DRAFT_c48551 | All Organisms → cellular organisms → Bacteria | 509 | Open in IMG/M |
| DRAFT_c55799 | Not Available | 523 | Open in IMG/M |
| DRAFT_c55845 | Not Available | 516 | Open in IMG/M |
| DRAFT_c68622 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 506 | Open in IMG/M |
| DRAFT_c70180 | Not Available | 520 | Open in IMG/M |
| DRAFT_c75283 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 514 | Open in IMG/M |
| DRAFT_c79579 | Not Available | 510 | Open in IMG/M |
| DRAFT_c79947 | All Organisms → cellular organisms → Bacteria | 515 | Open in IMG/M |
| DRAFT_c87791 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 527 | Open in IMG/M |
| DRAFT_c93989 | Not Available | 504 | Open in IMG/M |
| DRAFT_GNK3XHI02FJSPL.4517 | Not Available | 519 | Open in IMG/M |
| DRAFT_GNK3XHI02G45ZQ.9952 | Not Available | 526 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| DRAFT_c105172 | DRAFT_00401950 | F000203 | GMGVRQALFPALTFGAFLAEAASFPTLFSTASGVFGLVAGPSSAFRSLNF |
| DRAFT_c105801 | DRAFT_00445310 | F026908 | MVKTREENHRRVFSWFANRWRNHRSKRAEKASLNNSVVLENGILSGPATRPKTPLAVENSVGKLAAPETRRQMLAREREPGELP |
| DRAFT_c107918 | DRAFT_00533280 | F030100 | DRVSRIIPGDWGKVESGWLAQLLRERIERFEGRGRIHQFLWRCSRTVSTREKGTEERGTIRNRSEFSQVARGSFEFERIAVTRG |
| DRAFT_c114800 | DRAFT_00051610 | F049453 | MRPGTPLAVENGVGKLAANLAPNASAGKREWRTPIP |
| DRAFT_c115576 | DRAFT_00390620 | F001233 | SAAVNRLKLFISRIIPGDWGKAESGWLAHAPLKPDRKVRERKGRIHQFLWRRSRAVSYAKMELRDEER |
| DRAFT_c116103 | DRAFT_00588130 | F007695 | VKRRDPWHRANVPTKSEADPALRGKDADKNSQTCLDLVVSRWRNHQLKQAEKPHSKFSARKTLDGPATRPKTPLAVENSVGKLAAP |
| DRAFT_c134107 | DRAFT_00398200 | F008512 | TVRTALAGASKIETAQRKTPKGGQKERTHREEHGNSAGSVKNFQAPAMLKTTPLDCEIKGSLREKRRDPWPRANASPKAMADPGPVVKTRERFAGVS |
| DRAFT_c135472 | DRAFT_00321170 | F000344 | MRPKHLHAAESGVGKHITRESERAQACAAGKERVANAHS |
| DRAFT_c143416 | DRAFT_00491600 | F017072 | RKLRRGRILPVPLAVFAHRQMRMRDLAARRDEKPRRVESSSLEKFRFQANRSHPEGAQLLLCISTVRTALAGSSKIETAQRKTPKGGQKERTHREEHGNSAGSVKNFQAPAMLKTTPLDCEIKGSLREKRRDPWPRANASSKAMADPGPVVKTRKRFAGVS |
| DRAFT_c145360 | DRAFT_00477250 | F001633 | FFFLFFWGLGVRHALFPGGTRLDALAFAGGVLPDATLRGMRMFRSHGGTVLAVAGRDLRVRPLRPVRTLPAGSGAPDVVLTRLQFSLFAVGHPYHEDGTSFWLAVGPALRV |
| DRAFT_c16500 | DRAFT_00301040 | F063173 | AFFTVLHQDCRRF*QRVCPVPRVWPLNSQVAFLPQFSGTFFDIAELSKGFHGSCLDRVSFPVRPLTLFRLSAFFVWLIPFFFGNARVVRPVLIHSSNRLPSGNCDSLEFETASSYLTEFGTVSNRSSSLSPFFAFY*QRANAARGTGEFCLSLRTFRFALGGAEPTSLTQLFPSHLGLSLRRSP |
| DRAFT_c17560 | DRAFT_00441820 | F102642 | MTLAVFNEDEPLNERRRKAGQREHSSREGHDVLAGRVKNFRKAGDVEKGTAGL |
| DRAFT_c18921 | DRAFT_00430890 | F006338 | MLGGPATRPKTPLAVENSVGKLAAAEMWRQMPARERELGELPSP |
| DRAFT_c20604 | DRAFT_00615590 | F000734 | VKNFRTAGDREKATAGLWMKSNLRVKRRDPWHRANALQKVAAVPELIGEDAQEAVTGVS |
| DRAFT_c22876 | DRAFT_00098890 | F020615 | MFVENYRQDNVDSLMGGNNATPIPYPKISDEDWRVWNLFLPVRAVNLDRIAASNARQGMMLSLYDIPYAVTDEIRKANPYFERIEVWRKHEIEKDPIAVGIAGGQRYMIARWGLDKLIPFESIKKSVPLILAWQFISSPLAAMSGIAALGLLAWSFLV |
| DRAFT_c23854 | DRAFT_00390330 | F063173 | VPRVSPVNSQVAFRLQFSGIVFNIADLSKGFHGPCLDRVSFPERPLTLFRLFSVFHLADSVFIQNRQSRPSVLIHSSNRLPSGNCDSLDFETSSSYLTESGTVSNRSSFLSPFFAYTDSARTPPEELVKFCLSLRLFRSALGGAGPTSLTQLFPSHLGLSLRRSTS |
| DRAFT_c26728 | DRAFT_00064980 | F054015 | VVQVTLAVARKRYLPNERRPTAGQSERQHWEGHEFQAEPVKTFRHVGDVETNTAGL |
| DRAFT_c41928 | DRAFT_00238660 | F001633 | VGVGVRHALFPGGTRLGTLAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPSSDVPCRDRHAGRGADTPATFVVARRHPYHGDGTSFWPVVGPALRV |
| DRAFT_c44377 | DRAFT_00498320 | F000344 | MRPKHPHAAESGVGKHTTRESERAQACAAGKERVAN |
| DRAFT_c48551 | DRAFT_00598290 | F082012 | VDVAAATEHRAGQPRSERDAAFLARFDARMQLTKKK |
| DRAFT_c54029 | DRAFT_00061560 | F096832 | VPYPGVDTKATQFYLDYATNREILLEVGLAPKPGVTTRPTTFQLGLVPMRNGSTAHWVINYWMPRWTPPVPNN |
| DRAFT_c55799 | DRAFT_00430640 | F012439 | EPRDPIGQPKTRRPLGSSSLIATSTGGVHHSAGNPDPAVTFRPRRFSRPRRFPPPPVFAGLFHPAATSRVCPSGVCPSPRSRTGFPRPIHALLALNADTCDQRPRPRLQGFAPRRECGVGRDGLGPRPIPAPLVGFSSSGFSPRTAWECLHIPSALDLAPPGTPDGWPSASCR |
| DRAFT_c55845 | DRAFT_00498700 | F000734 | VKTFQNVSDVKKHTADLRTKSNLRVKRRDPWHRANVPTKSEADPALRGKDAD |
| DRAFT_c62886 | DRAFT_00068430 | F000203 | FLAEAASFPTLFSTASGVFGLVAGPSSAFRSLNFE |
| DRAFT_c68622 | DRAFT_00007440 | F014312 | TANGVVRLWERVKAERFALAMTPLVGAERLARKTERFSERPG |
| DRAFT_c70180 | DRAFT_00456290 | F073595 | VVSAGPVKTFRNASDVKNTPLGLRTKGNLRVKRRDPWHE |
| DRAFT_c75283 | DRAFT_00526120 | F014312 | GTANGVVRLWERVKAERFALAMTPLVGAERLARKTERFSERPDKNG |
| DRAFT_c79579 | DRAFT_00584750 | F035116 | MTITGVSRPGSQAGGATTSRSELKSLTQQSRRSNARDGPATRPETPLAVENSVGKPAAAREGAAPNAGMGKRDWRTPH |
| DRAFT_c79947 | DRAFT_00519340 | F001232 | MSTRDDEIRQVLAELDIHIAEVEASVATLRGLLADGEIPGEEG |
| DRAFT_c87791 | DRAFT_00394480 | F001633 | GVGVRHALFPGGTRLDALAFAGGVLPDATLRGMRMFRSHGGTVLAVAGRDLRVRPLRPGSDAPCRERRAGRGADTPAIFIVRVGHPYHEDGTSFWLAVGPALRV |
| DRAFT_c93989 | DRAFT_00044980 | F001758 | VTGEKLGQAGWPGSSESGSKETKGEAEFNQFLWRRSRAVSIREKGLRNEERLETVPDSVK |
| DRAFT_c94163 | DRAFT_00567790 | F000203 | FAKLSFPALTFGAFLAEAASFPTLFSTASGVFGLVAGPSSAFRSLNFE |
| DRAFT_GNK3XHI02FJSPL.4517 | DRAFT_00470570 | F063173 | PVPRVWPLNSQVAFLPQFSGTFFDIAELSKGFHGPCLDRVSFPVRPLTLFRLSAFFVWLIPFFFGNARVVRPVLIHSSNRLPSGNCDSLEFETSSSYLTEFGTVSHRSSSLSPFFAFTDSARTLPEELVNSASPFEPFDSLSEELSQPA |
| DRAFT_GNK3XHI02G45ZQ.9952 | DRAFT_00401760 | F001024 | MRPKTPLAVENGVGKPAAPPRWERQMSARERESGELP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |