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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2222084001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050523 | Gp0053932 | Ga0011220 |
| Sample Name | Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Dispersant |
| Sequencing Status | Finished |
| Sequencing Center | Alabama State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 43745562 |
| Sequencing Scaffolds | 45 |
| Novel Protein Genes | 51 |
| Associated Families | 50 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 30 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 3 |
| All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → Bellamyvirus bellamy | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Intertidal Zone → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → oil spill → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Daulphin Laboratory, Alabama, USA | |||||||
| Coordinates | Lat. (o) | 30.15 | Long. (o) | -88.446 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003035 | Metagenome | 512 | N |
| F004086 | Metagenome / Metatranscriptome | 454 | Y |
| F004513 | Metagenome / Metatranscriptome | 435 | Y |
| F008849 | Metagenome / Metatranscriptome | 327 | Y |
| F009444 | Metagenome / Metatranscriptome | 318 | Y |
| F009725 | Metagenome / Metatranscriptome | 314 | Y |
| F011622 | Metagenome / Metatranscriptome | 289 | Y |
| F012349 | Metagenome / Metatranscriptome | 281 | Y |
| F015473 | Metagenome / Metatranscriptome | 254 | Y |
| F016383 | Metagenome / Metatranscriptome | 247 | Y |
| F016657 | Metagenome / Metatranscriptome | 245 | Y |
| F018158 | Metagenome | 236 | N |
| F022760 | Metagenome / Metatranscriptome | 213 | Y |
| F023489 | Metagenome / Metatranscriptome | 210 | Y |
| F023608 | Metagenome / Metatranscriptome | 209 | Y |
| F023614 | Metagenome / Metatranscriptome | 209 | Y |
| F027853 | Metagenome / Metatranscriptome | 193 | Y |
| F028361 | Metagenome / Metatranscriptome | 192 | Y |
| F029767 | Metagenome / Metatranscriptome | 187 | Y |
| F030059 | Metagenome / Metatranscriptome | 186 | Y |
| F033003 | Metagenome / Metatranscriptome | 178 | Y |
| F034589 | Metagenome / Metatranscriptome | 174 | Y |
| F036474 | Metagenome | 170 | Y |
| F036986 | Metagenome / Metatranscriptome | 169 | Y |
| F037191 | Metagenome / Metatranscriptome | 168 | Y |
| F041147 | Metagenome / Metatranscriptome | 160 | Y |
| F042913 | Metagenome / Metatranscriptome | 157 | N |
| F043372 | Metagenome | 156 | N |
| F044425 | Metagenome / Metatranscriptome | 154 | Y |
| F048825 | Metagenome / Metatranscriptome | 147 | Y |
| F049575 | Metagenome / Metatranscriptome | 146 | Y |
| F049936 | Metagenome | 146 | Y |
| F051163 | Metagenome / Metatranscriptome | 144 | Y |
| F059880 | Metagenome / Metatranscriptome | 133 | Y |
| F065235 | Metagenome / Metatranscriptome | 128 | Y |
| F065241 | Metagenome | 128 | N |
| F068776 | Metagenome / Metatranscriptome | 124 | N |
| F072285 | Metagenome / Metatranscriptome | 121 | Y |
| F073415 | Metagenome / Metatranscriptome | 120 | Y |
| F073530 | Metagenome | 120 | Y |
| F074500 | Metagenome / Metatranscriptome | 119 | N |
| F081912 | Metagenome / Metatranscriptome | 114 | N |
| F085576 | Metagenome / Metatranscriptome | 111 | N |
| F091647 | Metagenome | 107 | Y |
| F092055 | Metagenome | 107 | Y |
| F092911 | Metagenome / Metatranscriptome | 107 | Y |
| F097244 | Metagenome | 104 | N |
| F097371 | Metagenome / Metatranscriptome | 104 | Y |
| F105086 | Metagenome | 100 | N |
| F105090 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2222181741 | Not Available | 518 | Open in IMG/M |
| 2222182067 | Not Available | 518 | Open in IMG/M |
| 2222184199 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 515 | Open in IMG/M |
| 2222184872 | All Organisms → cellular organisms → Bacteria | 514 | Open in IMG/M |
| 2222184975 | Not Available | 514 | Open in IMG/M |
| 2222186084 | Not Available | 513 | Open in IMG/M |
| 2222186543 | Not Available | 512 | Open in IMG/M |
| 2222187516 | Not Available | 511 | Open in IMG/M |
| 2222188235 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae | 510 | Open in IMG/M |
| 2222188265 | Not Available | 510 | Open in IMG/M |
| 2222188505 | Not Available | 510 | Open in IMG/M |
| 2222189133 | Not Available | 509 | Open in IMG/M |
| 2222189659 | Not Available | 509 | Open in IMG/M |
| 2222189760 | Not Available | 509 | Open in IMG/M |
| 2222190439 | Not Available | 508 | Open in IMG/M |
| 2222196159 | Not Available | 502 | Open in IMG/M |
| 2222196404 | Not Available | 502 | Open in IMG/M |
| 2222196832 | Not Available | 501 | Open in IMG/M |
| 2222218417 | All Organisms → cellular organisms → Bacteria | 565 | Open in IMG/M |
| 2222255619 | Not Available | 550 | Open in IMG/M |
| 2222259148 | Not Available | 547 | Open in IMG/M |
| 2222259369 | Not Available | 546 | Open in IMG/M |
| 2222261463 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 541 | Open in IMG/M |
| 2222261545 | Not Available | 541 | Open in IMG/M |
| 2222261931 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 540 | Open in IMG/M |
| 2222262419 | Not Available | 539 | Open in IMG/M |
| 2222262678 | Not Available | 538 | Open in IMG/M |
| 2222263609 | All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | 536 | Open in IMG/M |
| 2222263896 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 536 | Open in IMG/M |
| 2222265722 | Not Available | 532 | Open in IMG/M |
| 2222267595 | Not Available | 529 | Open in IMG/M |
| 2222268466 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → Halobacteriovorax | 528 | Open in IMG/M |
| 2222268513 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 | 528 | Open in IMG/M |
| 2222269133 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 527 | Open in IMG/M |
| 2222269291 | Not Available | 527 | Open in IMG/M |
| 2222270814 | All Organisms → cellular organisms → Bacteria | 525 | Open in IMG/M |
| 2222270852 | Not Available | 525 | Open in IMG/M |
| 2222271697 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 | 523 | Open in IMG/M |
| 2222272059 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica | 523 | Open in IMG/M |
| 2222272779 | Not Available | 522 | Open in IMG/M |
| 2222272980 | Not Available | 522 | Open in IMG/M |
| 2222272986 | Not Available | 522 | Open in IMG/M |
| 2222273385 | Not Available | 521 | Open in IMG/M |
| 2222274921 | Not Available | 519 | Open in IMG/M |
| 2222275163 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Bellamyvirus → Bellamyvirus bellamy | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2222181741 | 2222215050 | F068776 | EQIDELLQQNATIQANLGTDSTAEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR |
| 2222182067 | 2222215523 | F043372 | LPFFYLHLCKRVLYLALVKTTNIMKTLFERLRPEQRKRLQEMKKEMPFVQDGLIKVLRNHTLLIHVPFGDVIDIVRYLGDGRHSIGDGIVAVYNCFEDIDKTGDDSSLQSDHNAQTTNT |
| 2222182299 | 2222215865 | F105090 | MKIELNLNDEWVDEVVRASLRDFIRRGYNNPDTPIKAMKKVLKFYSVYEDYKDFMEDIKELDDIHRHQERFDF |
| 2222184199 | 2222218527 | F034589 | LKEQPNPVDAFTQYDYEFIKKQLQNYLDPGSVEEDAPAALPGGTDSELPASLGSNKTDFTLETATAGNKDTVSKFDDLFNE |
| 2222184872 | 2222219453 | F004513 | LIGCGIKPNASCDVDLNKETMKEIKDSCVENPTVGIKKEF |
| 2222184975 | 2222219603 | F044425 | YSEPAQGIHYEIYWMLEGEVLPTRKLDAFLRQREKVSKIIEETGRESYLVYRKDDYGGYMSVTRDKLFPVKAT |
| 2222186084 | 2222221186 | F041147 | MDTTDEPIDTINRWQDWYRKHRIVAEIDVPLATKDSREQLHDTSKTTTTLDGSNNLLTDYCTAMSFQKAKEYFADTIAEFTNELSGKELYKAFYAAAMDNMDAVEKEYNK |
| 2222186543 | 2222221848 | F003035 | MTHFDYYLTADTKEAILTDLRSKGFEWYDTDDMGTPTGTRDPKKMEIVSIRGVGSCIYLEHLVETPAVIDDEGNLVTPPTFTTTFHANARMREETAFDTAMDPVPSTPANMWA |
| 2222186761 | 2222222161 | F023489 | SSRCGCGANATKIVSATQHILEGASGDFPGRHMKWVREHEKAGQATRES |
| 2222187516 | 2222223285 | F081912 | VTDSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIISILEINRD |
| 2222188235 | 2222224313 | F092055 | YSMTNTTMDQVYHYHTNWKEGKVNQMWIQQVEDKFIAIAYNPEKNVSMPMSKPRTSYQETLNWVRGWCGTFCPLY |
| 2222188265 | 2222224352 | F073530 | MPHKIVNGQQIELTAEEIAQRQTEESAWLGGAYQRAMNDLKTKRK |
| 2222188505 | 2222224703 | F018158 | KVVIVLCLFSGNGELLEHTYTESISDCLEKKRLMKRNMGPTVLITCGEAEAELEEIQGRIFVKSIRKMDH |
| 2222189133 | 2222225600 | F073530 | MPHKIVNGQQIELTAEEIAQRQTEESAWLGGAYQRAMNDLRQKEIACYLLQI |
| 2222189659 | 2222226365 | F042913 | APCTEISASEIPLNGTQMYSSGGLSTASHQTVHTIQPWHKMLNSGSIVSTAEKSHELHGSQPSTQVDTKSIKFTEQIRSVLDPTGLEHLEQCAYYLTQDDMGIKNVKFKKDLLQDIVKYNEIEIKAQRPSKSACRKLFTLILN |
| 2222189760 | 2222226505 | F036474 | MSQDKLDEAVQEALGYVTRVGDATSQLVNVAILFGDNANESVSGRSHRLKDKSKAWKWLNATIDYVFDENHCERAYLNDVARAAKTLNEAKPKKKLLKSEVL |
| 2222190439 | 2222227503 | F037191 | MTVAEIIEKLHQYPPDMRVEITDGYNLHFYRGDFAFQLFEGDDGETFVDIGIGGFDYD |
| 2222191104 | 2222228464 | F097244 | MKTETYNEAVENTKHTLGNKLKFKLEFMFMMLNAGRNEEAAKMYDQLIEEFDK |
| 2222196159 | 2222235670 | F051163 | MAFLVDRVTIDHRSKFQKLWAGFLNWAEVVGYSRAAAHFASQGQHDLAKNCMMQVAKLKG |
| 2222196404 | 2222236018 | F073415 | NNQAMKHCLDMVGYDRNAPVENRFEGVDIAAAAKCYQAYKEQVEAVQMANLRDFLKHNPRYRHPGQSNNRCWGKPREMPFTSATISATPYGFTAGVSYKDTMPAGCYENAPWDNREGTHDYDG |
| 2222196832 | 2222236622 | F016657 | MARRYWTEEQLSKEQVQWVLKDEGYSEKEIENAISDYYYIHIRSNILLHHFIAPIVLAVVMIVLALQVYSLLK |
| 2222210644 | 2222256192 | F036986 | MATTSKNAYEIRSDLLGLAKQLVEFNYQVQVNNFEYKVRKDGDQVVTEFKAPTVSPEDIIETAKKFNDFVTNGEGLATFKEVGQKMYEEGLKNS |
| 2222218417 | 2222267008 | F049936 | MSTIGFFGDSFCASNQSESWCNILQEKLGCDRIRWFGEPGRSIWSVFFRFNKLIEQDR |
| 2222255619 | 2222313280 | F012349 | MPATLEVDIEWNAHYALWPVRSSWSKKRIWLKKYWQGDIYYDAMGRPPIKEKSWKLIYTENEYLMYLLKQEANEYQHPLGAPVFKSVRAK |
| 2222259148 | 2222315518 | F016383 | MKYYYNNVPGKGLCRNNLIYTSLINEDKTEFCMWFNNDTDYHKGQNEVVDPELMDMKFKREKIS |
| 2222259369 | 2222315871 | F074500 | YTINDFYNLEYYNKQRSADGDIVQYIAKCFKAKTHFLITVQNNKLLKVQKY |
| 2222261463 | 2222319067 | F004086 | MDLEVAESVNLDGTINYTSINSDLSQGTKEKNIGFFYNKAGADELDASFNFTAEYRMDKSGVANNDGVEVAMKMVKKFAGSCKFLWMKNPKCFTKDANGKEVLKDNLFGTSIDNATKHGLVYDMKTDKFIPIKKGKN |
| 2222261545 | 2222319190 | F030059 | MNSNIKDNLFQIQEVANKALELHKNSTERFSGVNYADLRVVDVYVKYSIHDEDLEYGVLIEECSPTVYDFQDYMLEYLKDNLPNNLGW |
| 2222261931 | 2222319814 | F092911 | KEYELFQKLKTILKHSKAETLDGVYFICGEGGEKDGMGLPEFISVCPAFGLDGFAMYKKHTEYSAPEW |
| 2222262419 | 2222320554 | F049575 | DLMVIHNTLYKSLSVVGISIWSQETRERVMDKVTLIMEQMNADVVCGDVEPIVVSGDIAG |
| 2222262678 | 2222320935 | F059880 | VVKLHFENTDEFERVFKAKDLSVTDAIVKGIQEALSYQKKTANLFEISFENVDMVYEISLPSNQWEIALENCMNFYRDEEESDRAIDTYLLQKEVRKWLKLNTFRRRILPAC |
| 2222263609 | 2222322348 | F091647 | LVKTKEMKIIKRAIKLSYDRFKPNPYQRRYHFAIAFNVNKPICIAQNNPIKINHKAYKIGQKFNIQKYQEYPFSHAESHLVSKLLDTHNTIRSDWSLVVLRINRQGKILLSKPCDNCQSILDAVGLSRVYWSID |
| 2222263896 | 2222322762 | F033003 | MNFWEGQISEDTTKVLVIPNITNSGNIEKDSFIDVIYNHIKGLKKHGDYYWHVLVPTGNVTKKLNLSNVKQHQIDIPGDMMNQRSFPSDN |
| 2222265722 | 2222325572 | F015473 | MSKEKKEGFFSNVRNQIIAGAGVVLTTLGTVFTDKIEEFFGVEDDAAVEVVQEQNVNVEGPTITINIPEQQKDTVVKKVYVKPKPKLTETEKRKKEGIDW |
| 2222267595 | 2222328434 | F009725 | MLIWEKIKNTCATIGYSRAAAQLASQGRHDLAKNLMLAGIKEVAVKDRAIKRLERVKKAKASYEPGDHYMKGHKVAFWRGHADA |
| 2222268466 | 2222329725 | F008849 | CYYILVPTKHFRIKEILPTLDRDIIQLWSFRPFETAGKDAEIKLTTGKFIDESMFAFSKKDGVEPGGWGPGTINHMTVEQNAEWADKVYRKYIINE |
| 2222268513 | 2222329790 | F023614 | DITIFTIDGGATLATETNPGEAMEAIMELLHEKCTVLAVGVEDGAGGFRVMLQNSGWDSAGLQTAIQNLGASVGTNGYDASGATVTDFTF |
| 2222269133 | 2222330690 | F011622 | YKTFEAMVKFTFAEDGPNGYSDAIRALPGVTTVTVASEDQDTKSATYKIKIISQKEPIAAFDALISNAKAKYSDIIKAEVGEQTIEEK |
| 2222269261 | 2222330888 | F028361 | MTYDEFISKSPEYYMDMVRLIDIKLKHRMELTSEEKEING |
| 2222269291 | 2222330930 | F027853 | MKYFYERSKFSEFKSNTTYHQLLEMTDDEFVAWARLLRKEVTEQWDEQGTPPVIGKNEQGIINNFKKLKY |
| 2222270814 | 2222333166 | F065235 | MVWKGDIISDQFAIYKDIDWNKFIFYKDTKGLWEYAEENFAEYYLKGESHPPPIAHYHWVKDIMFKSDILCPEEEYNKLKDYFKGKDGRSRI |
| 2222270852 | 2222333223 | F022760 | TMEYSPGARHGGVPKVPGVMKIETIQDKHLDMLQEFCNTCKELGYENNSSFRAMKLLWCKIEGEYWCAVKDHKIIAVAGCHPLPEVSPNAWRIMFRGCELPGNDTFKGLGKGDWNSITQREFIPLMVKYIPSDELYITTNTKHEHSNGKAARNHRLMGLLAKQRILDNCGDLVL |
| 2222271697 | 2222334423 | F048825 | GEEEEYTRGSSRELTDDLREEISNLQPTRRAAAPVEDDEDDDALSYFAKLASDD |
| 2222272059 | 2222334946 | F105086 | MKQCQFIRINNEADSIFVPMPNSWERHQWLKGYFGKECSVAGRVLWSLLTYEYEVMVLIEENGIFREEKKRMKVANPYA |
| 2222272779 | 2222336012 | F009444 | LNDAVTIGYNYTIKSVESTSLDTTANELVGSYTIGQTTFSAGYGEIEDGNKYHTYGAEKKIGSNFSNVRGYEITDVP |
| 2222272980 | 2222336317 | F023608 | RIINQLEDAVEEQDWAIVQSMIEDLDEIYNQLDRQESGYNIDYE |
| 2222272986 | 2222336327 | F072285 | MKYPQSVNKSLLIREVYEDTYETPIDYIVDTIIWKNRVDELHTIWRKDKDPRKEKND |
| 2222273385 | 2222336928 | F085576 | YIRLKSGNFENGYFDVGNNLDLIMETAKSEFAKDCMAQGFVPLTSEVVLVEQTDI |
| 2222273499 | 2222337102 | F029767 | MTISTTKLVDNNFHIIVNSNGVGSEINQKLVDVVNSNNASSEPKVSIANIVYEIIGTGEVTVF |
| 2222274921 | 2222339145 | F097371 | MAKTLRTSGDYTVKAGDGYNAGSGSNTIKLDARFVRIPGGFDS |
| 2222275163 | 2222339502 | F065241 | MSYTFEQFEKDKETLLNLIADCEELEMKENGDQFFIQCDEFNQTKYTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |