NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F081912

Metagenome / Metatranscriptome Family F081912

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F081912
Family Type Metagenome / Metatranscriptome
Number of Sequences 114
Average Sequence Length 48 residues
Representative Sequence AYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Number of Associated Samples 84
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.25 %
% of genes from short scaffolds (< 2000 bps) 86.84 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.702 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(45.614 % of family members)
Environment Ontology (ENVO) Unclassified
(60.526 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.825 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 47.92%    Coil/Unstructured: 52.08%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF02794HlyC 9.65
PF13361UvrD_C 0.88
PF00534Glycos_transf_1 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG2994ACP:hemolysin acyltransferase (hemolysin-activating protein)Posttranslational modification, protein turnover, chaperones [O] 9.65


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.70 %
All OrganismsrootAll Organisms19.30 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2222084001|2222187516Not Available511Open in IMG/M
3300000101|DelMOSum2010_c10271440Not Available522Open in IMG/M
3300001419|JGI11705J14877_10202633Not Available508Open in IMG/M
3300005512|Ga0074648_1027494All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2959Open in IMG/M
3300005582|Ga0049080_10012744All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.2920Open in IMG/M
3300005585|Ga0049084_10219464Not Available645Open in IMG/M
3300006025|Ga0075474_10185511Not Available642Open in IMG/M
3300006027|Ga0075462_10077923Not Available1040Open in IMG/M
3300006402|Ga0075511_1013289Not Available1183Open in IMG/M
3300006405|Ga0075510_10035214Not Available596Open in IMG/M
3300006637|Ga0075461_10017572All Organisms → cellular organisms → Bacteria2359Open in IMG/M
3300006637|Ga0075461_10122685Not Available807Open in IMG/M
3300006734|Ga0098073_1049425Not Available563Open in IMG/M
3300006802|Ga0070749_10397141All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.761Open in IMG/M
3300006802|Ga0070749_10625246All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300006802|Ga0070749_10742783Not Available523Open in IMG/M
3300006810|Ga0070754_10163493Not Available1056Open in IMG/M
3300006810|Ga0070754_10496975Not Available525Open in IMG/M
3300006920|Ga0070748_1137684Not Available913Open in IMG/M
3300006924|Ga0098051_1123145Not Available691Open in IMG/M
3300007344|Ga0070745_1315938Not Available554Open in IMG/M
3300007346|Ga0070753_1064117Not Available1481Open in IMG/M
3300007346|Ga0070753_1165980Not Available830Open in IMG/M
3300007640|Ga0070751_1305004Not Available592Open in IMG/M
3300008012|Ga0075480_10295988Not Available823Open in IMG/M
3300008012|Ga0075480_10495312Not Available589Open in IMG/M
3300009001|Ga0102963_1374497Not Available558Open in IMG/M
3300009071|Ga0115566_10711995Not Available556Open in IMG/M
3300009433|Ga0115545_1287541Not Available548Open in IMG/M
3300009440|Ga0115561_1337165Not Available554Open in IMG/M
3300009476|Ga0115555_1182484Not Available870Open in IMG/M
3300009496|Ga0115570_10226916Not Available833Open in IMG/M
3300010299|Ga0129342_1343721Not Available509Open in IMG/M
3300010300|Ga0129351_1042174All Organisms → cellular organisms → Bacteria1877Open in IMG/M
3300010300|Ga0129351_1152126Not Available913Open in IMG/M
3300010300|Ga0129351_1168651Not Available858Open in IMG/M
3300010300|Ga0129351_1195993Not Available785Open in IMG/M
3300012528|Ga0129352_10839771Not Available1273Open in IMG/M
3300017701|Ga0181364_1065237Not Available560Open in IMG/M
3300017956|Ga0181580_10019758All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria5293Open in IMG/M
3300017967|Ga0181590_10079744Not Available2578Open in IMG/M
3300017967|Ga0181590_10998785Not Available546Open in IMG/M
3300018416|Ga0181553_10212468Not Available1113Open in IMG/M
3300018416|Ga0181553_10617318Not Available572Open in IMG/M
3300018420|Ga0181563_10176682Not Available1320Open in IMG/M
3300018421|Ga0181592_10459770All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.887Open in IMG/M
3300018424|Ga0181591_10698218Not Available714Open in IMG/M
3300019724|Ga0194003_1041376Not Available579Open in IMG/M
3300019751|Ga0194029_1025413Not Available919Open in IMG/M
3300019751|Ga0194029_1027868Not Available885Open in IMG/M
3300019756|Ga0194023_1050405Not Available837Open in IMG/M
3300019756|Ga0194023_1102116Not Available579Open in IMG/M
3300021958|Ga0222718_10101173Not Available1698Open in IMG/M
3300021958|Ga0222718_10160939Not Available1258Open in IMG/M
3300021958|Ga0222718_10255578Not Available928Open in IMG/M
3300021958|Ga0222718_10540638Not Available556Open in IMG/M
3300021959|Ga0222716_10403323Not Available794Open in IMG/M
3300021960|Ga0222715_10236299Not Available1071Open in IMG/M
3300021960|Ga0222715_10243180Not Available1051Open in IMG/M
3300021962|Ga0222713_10007006Not Available10638Open in IMG/M
3300021962|Ga0222713_10614259Not Available632Open in IMG/M
3300021964|Ga0222719_10434683Not Available806Open in IMG/M
3300021964|Ga0222719_10791801Not Available522Open in IMG/M
3300022050|Ga0196883_1014774Not Available931Open in IMG/M
3300022057|Ga0212025_1025992Not Available970Open in IMG/M
3300022057|Ga0212025_1044638All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.763Open in IMG/M
3300022068|Ga0212021_1021532Not Available1209Open in IMG/M
3300022071|Ga0212028_1011706Not Available1424Open in IMG/M
3300022158|Ga0196897_1012223Not Available1061Open in IMG/M
3300022168|Ga0212027_1024652Not Available810Open in IMG/M
3300022169|Ga0196903_1033824Not Available602Open in IMG/M
3300022183|Ga0196891_1097812Not Available516Open in IMG/M
3300023081|Ga0255764_10089786All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.1733Open in IMG/M
3300023087|Ga0255774_10291126All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.788Open in IMG/M
3300023116|Ga0255751_10001035Not Available26482Open in IMG/M
3300023116|Ga0255751_10478288Not Available595Open in IMG/M
3300023170|Ga0255761_10508823Not Available567Open in IMG/M
3300023172|Ga0255766_10039351All Organisms → cellular organisms → Bacteria3197Open in IMG/M
3300023176|Ga0255772_10110588All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.1710Open in IMG/M
3300023180|Ga0255768_10500730Not Available615Open in IMG/M
3300025543|Ga0208303_1104961Not Available591Open in IMG/M
3300025610|Ga0208149_1066042Not Available910Open in IMG/M
3300025610|Ga0208149_1084428All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Aequorivita → unclassified Aequorivita → Aequorivita sp.778Open in IMG/M
3300025630|Ga0208004_1046454Not Available1189Open in IMG/M
3300025653|Ga0208428_1014533Not Available2677Open in IMG/M
3300025653|Ga0208428_1016446All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2483Open in IMG/M
3300025671|Ga0208898_1062461Not Available1282Open in IMG/M
3300025671|Ga0208898_1086852Not Available989Open in IMG/M
3300025674|Ga0208162_1110555All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.803Open in IMG/M
3300025704|Ga0209602_1139302Not Available794Open in IMG/M
3300025712|Ga0209305_1145676Not Available724Open in IMG/M
3300025751|Ga0208150_1005513All Organisms → cellular organisms → Bacteria4672Open in IMG/M
3300025759|Ga0208899_1106613Not Available1034Open in IMG/M
3300025759|Ga0208899_1253263Not Available522Open in IMG/M
3300025818|Ga0208542_1107980All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales793Open in IMG/M
3300025822|Ga0209714_1059474Not Available1195Open in IMG/M
3300025840|Ga0208917_1200593Not Available665Open in IMG/M
3300025853|Ga0208645_1044690All Organisms → cellular organisms → Bacteria2159Open in IMG/M
3300025853|Ga0208645_1119927Not Available1052Open in IMG/M
3300025853|Ga0208645_1210446Not Available680Open in IMG/M
3300026183|Ga0209932_1024311Not Available1569Open in IMG/M
3300026187|Ga0209929_1156173Not Available553Open in IMG/M
3300027621|Ga0208951_1194816Not Available509Open in IMG/M
3300027917|Ga0209536_101005804Not Available1027Open in IMG/M
(restricted) 3300028045|Ga0233414_10591014Not Available526Open in IMG/M
3300032274|Ga0316203_1237033Not Available501Open in IMG/M
3300032277|Ga0316202_10586331Not Available525Open in IMG/M
3300034374|Ga0348335_019591All Organisms → cellular organisms → Bacteria3303Open in IMG/M
3300034374|Ga0348335_054453All Organisms → cellular organisms → Bacteria1515Open in IMG/M
3300034375|Ga0348336_042243Not Available1979Open in IMG/M
3300034375|Ga0348336_158718Not Available660Open in IMG/M
3300034418|Ga0348337_165585All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.601Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous45.61%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh14.04%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water9.65%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine7.02%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient4.39%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater3.51%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic2.63%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water2.63%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.75%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat1.75%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.88%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.88%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment0.88%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.88%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Oil-Contaminated → Marine0.88%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.88%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment0.88%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.88%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2222084001Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - DispersantEnvironmentalOpen in IMG/M
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300001419Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006402Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006405Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006734Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300012528Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019724Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_9-10_MGEnvironmentalOpen in IMG/M
3300019751Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022050Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v3)EnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300023081Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaGEnvironmentalOpen in IMG/M
3300023087Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaGEnvironmentalOpen in IMG/M
3300023116Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaGEnvironmentalOpen in IMG/M
3300023170Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaGEnvironmentalOpen in IMG/M
3300023172Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaGEnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025630Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025704Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)EnvironmentalOpen in IMG/M
3300025712Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025822Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414 (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026183Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027621Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027917Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
22222232852222084001MarineVTDSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIISILEINRD
DelMOSum2010_1027144013300000101MarineIAYADITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR*
JGI11705J14877_1020263313300001419Saline Water And SedimentSTDYQIAYADISGPTICNVAKGPVILEENDVLKIESSVAAGISAIISILEINRS*
Ga0074648_102749453300005512Saline Water And SedimentAKGPVVLEENDVLKIESSVAAGISAIISILEINRD*
Ga0049080_1001274413300005582Freshwater LenticDYQIAYASITGPTICNLASGPIVLEEGDILKIASSTITGISAIVSILEMNREDR*
Ga0049084_1021946433300005585Freshwater LenticTDYQIAYASITGPTICNLASGPIVLEEGDILKIASSTITGISAIVSILEMNREDR*
Ga0075474_1018551113300006025AqueousTDSSATTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE*
Ga0075462_1007792313300006027AqueousQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISAVISILEINRE*
Ga0075503_100411133300006400AqueousIAYANITGPTICNVSKGPNVLESGDALKIESSSTVGISGIVSYIEIFDEKSA*
Ga0075511_101328933300006402AqueousNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE*
Ga0075510_1003521413300006405AqueousGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE*
Ga0075461_1001757243300006637AqueousVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE*
Ga0075461_1012268513300006637AqueousIAYANITGPTICNVSKGPNVLESGDALKIESSSTVGISGIVSYIEIFDEKSS*
Ga0098073_104942533300006734MarineAEISGPTICNVAKGPVVLEENDILLLESSDTSGISAVISILEINRD*
Ga0070749_1039714113300006802AqueousSAATTYQIAHAEISGPTICNVAKGPVVLEENDILLLESSDTSGISAVISILEINRD*
Ga0070749_1062524613300006802AqueousASISGPTICNVAKGPVVLEESDVLKIETSDTTNVSALLSIMEMNRNDENG*
Ga0070749_1074278333300006802AqueousTICNVAKGPVILEENDILKIETSVTSGISGIISILEINRE*
Ga0070754_1016349313300006810AqueousSSTTDYQIAYADISGPTICNVAKGPVVLEENDILKIESSVTSGISGIISILEINRD*
Ga0070754_1049697513300006810AqueousYANITGPTICNVAKGPVILEENDILKIETSVTSGISGIICILEINRE*
Ga0070748_113768413300006920AqueousGPVVLEENDILKIESSDATGISAIISILEINREDR*
Ga0098051_112314533300006924MarineDYQIAYASISGPTICNIAKGPVILEENDILKIESSVTSGISGIISILEINRD*
Ga0070745_131593813300007344AqueousSTDYQIAYASITGATICNLAKGPVVLEENDVLKIESSDTTGISGIVSILEINRD*
Ga0070753_106411713300007346AqueousICNVAKGPIVLEENDSLLIETSVTTSVTATVSILEINRD*
Ga0070753_116598013300007346AqueousITGPTICNVAKGPVILEENDILKIETSVTSGISGIISILEINRE*
Ga0070751_130500413300007640AqueousTICNVAKGPVVLEENDILLLESSDTSGISAVISILEINRD*
Ga0075480_1029598833300008012AqueousGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR*
Ga0075480_1049531233300008012AqueousSSAATTYQIAHAEISGPTICNVAKGPIVLEENDILLLESSDTSGISAIISILEINRD*
Ga0102963_137449713300009001Pond WaterKAIVTDSSATTDYQIAYADISGPTICNIAKGPVILEENDVLKIESSVTSGISAIISILEINRD*
Ga0115566_1071199513300009071Pelagic MarineATIDYQIAYANITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR*
Ga0115545_128754113300009433Pelagic MarineSATTDYQVAYADITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR*
Ga0115561_133716513300009440Pelagic MarineITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR*
Ga0115555_118248413300009476Pelagic MarineGPTICNVAKGPIVLEESDVLKIESSVTAGISAIISILEINREDR*
Ga0115570_1022691613300009496Pelagic MarineATTDYQVAYANITGPTICNVAKGPVILEENDILKIETSVTSGISGIISILEINRE*
Ga0129342_134372123300010299Freshwater To Marine Saline GradientYQIAYANITGPTICNVSKGPNVLESGDALKIESSSTVGISGIVSYIEIFDEKSA*
Ga0129351_104217413300010300Freshwater To Marine Saline GradientYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISAVISILEINRE*
Ga0129351_115212633300010300Freshwater To Marine Saline GradientQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE*
Ga0129351_116865133300010300Freshwater To Marine Saline GradientVTDSSATTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0129351_119599313300010300Freshwater To Marine Saline GradientQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE*
Ga0129352_1083977113300012528AqueousPTICNVAKGPVVLEENDVLKIETSVAAGISAIVSILEINRD*
Ga0181364_106523713300017701Freshwater LakeQIAYASISGPTICNLASGPIVLEEGDILKIASSTITGISAIVSILEMNREDR
Ga0181580_1001975863300017956Salt MarshVTDSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0181590_1007974443300017967Salt MarshSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0181590_1099878513300017967Salt MarshYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIISILEINRD
Ga0181553_1021246813300018416Salt MarshTICNIAKGPVVLEENDVLKIESSVTSGISGIISILEINRD
Ga0181553_1061731813300018416Salt MarshASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIETSVAAGISAIVSILEINRS
Ga0181563_1017668243300018420Salt MarshSATTDYQIAYADISGPTICNIAKGPVVLEENDVLKIESSVAAGISAIVSILEINRD
Ga0181592_1045977013300018421Salt MarshPTICNVAKGPVVLEENDVLKIETSVAAGISAIISILEINRD
Ga0181591_1069821833300018424Salt MarshTVTDSSATTDYQIAYADITGPTICNIAKGPVVLEENDVLKIESSDISGISAIISILEINR
Ga0194003_104137633300019724SedimentAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0194029_102541313300019751FreshwaterNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0194029_102786833300019751FreshwaterCNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0194023_105040513300019756FreshwaterQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0194023_110211633300019756FreshwaterYANITGPTICNIAKGPVVLEENDVLKIESSDISGISAIISILEINRD
Ga0222718_1010117333300021958Estuarine WaterPTICNVAKGPIVLEESDVLKIESSVTAGISAIISILEINREDR
Ga0222718_1016093913300021958Estuarine WaterYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRD
Ga0222718_1025557833300021958Estuarine WaterTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRD
Ga0222718_1054063833300021958Estuarine WaterISGPTICNIAKGPIVLEESDVLKIESSVTSGISAIISILEINRE
Ga0222716_1040332313300021959Estuarine WaterQIAYADISGPTICNIAKGPVILEENDVLKIESSVTSGISAIISILEINRD
Ga0222715_1023629913300021960Estuarine WaterCNVAKGPIVLEESDVLKIESSVTAGISAIISILEINREDR
Ga0222715_1024318043300021960Estuarine WaterAKGPVVLEENDVLKIETSVAAGISAIISILEINRD
Ga0222713_10007006123300021962Estuarine WaterYASISGPTICNMAKGPVILEEGDVLKIESSVTSGISGIISILEMNREDR
Ga0222713_1061425923300021962Estuarine WaterTTDYQIAYANITGPTICNVSKGPNVLESGDALKIESSSTAGISGIVSYIEIFDEKSA
Ga0222719_1043468333300021964Estuarine WaterCNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRD
Ga0222719_1079180133300021964Estuarine WaterYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0196883_101477433300022050AqueousDITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0212025_102599233300022057AqueousVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0212025_104463833300022057AqueousAKTYVIDSSAATTYQIAHAEISGPTICNVAKGPIVLEENDILLLESSDTSGISAIISILEINRD
Ga0212021_102153233300022068AqueousTGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0212028_101170613300022071AqueousYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0196897_101222313300022158AqueousDITGPTICNVAKGPLVLEENDVLKIESSVTSGISGIISILEINRE
Ga0212027_102465233300022168AqueousGANGPIVLEENDVLKIESSDISGISAIISILEINRD
Ga0196903_103382413300022169AqueousAKGPVILEENDILKIETSVTSGISGIISILEINRE
Ga0196891_109781233300022183AqueousICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0255764_1008978633300023081Salt MarshNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0255774_1029112613300023087Salt MarshHVTDSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIETSVAAGISAIISILEINR
Ga0255751_1000103513300023116Salt MarshIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0255751_1047828813300023116Salt MarshADISGPTICNVAKGPIVLEENDVLKIETSVAAGISAIISILEINRD
Ga0255761_1050882323300023170Salt MarshDYQIAYASISGPTICNIAKGPVVLEENDVLKIESSDISGISAIISILEINRD
Ga0255766_1003935113300023172Salt MarshCNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0255772_1011058813300023176Salt MarshPTICNVAKGPVVLEENDVLKIESSVAAGISAIVSILEINRS
Ga0255768_1050073033300023180Salt MarshTGPTICNIAKGPVVLEENDVLKIESSDISGISAIISILEINRD
Ga0208303_110496113300025543AqueousVAYANITGPTICNVAKGPVILEENDILKIETSVTSGISGIISILEINRE
Ga0208149_106604233300025610AqueousNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208149_108442813300025610AqueousNIAKGPVILEENDILKIESSVTSGISGIISILEINRD
Ga0208004_100807363300025630AqueousANITGPTICNVSKGPNVLESGDALKIESSSTVGISGIVSYIEIFDEKSS
Ga0208004_104645433300025630AqueousVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208428_101453313300025653AqueousGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208428_101644613300025653AqueousTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208898_106246113300025671AqueousYQIAHAEISGPTICNVAKGPVVLEENDILLLESSDTSGISAIISILEINRD
Ga0208898_108685233300025671AqueousATTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208162_111055533300025674AqueousGPTICNVAKGPVVLEENDVLKIETSVAAGISAIISILEINRD
Ga0209602_113930233300025704Pelagic MarineTGPTICNVAKGPVILEENDILKIETSVTSGISGIISILEINRE
Ga0209305_114567613300025712Pelagic MarineNITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR
Ga0208150_100551313300025751AqueousSATTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0208899_110661333300025759AqueousTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0208899_125326333300025759AqueousNVAKGPVVLEENDVLKIESSVTSGISAVISILEINRE
Ga0208542_110798013300025818AqueousAKGPIVLQESDVLKIETSDTTNVSAIISIMEMNRSDENG
Ga0209714_105947413300025822Pelagic MarineTIDYQIAYADITGPTICNVAKGPVVLEENDILKIESSDATGISAIISILEINREDR
Ga0208917_120059313300025840AqueousAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0208645_104469013300025853AqueousIAYANITGPTICNVSKGPNVLESGDALKIESSSTVGISGIVSYIEIFDEKSS
Ga0208645_111992713300025853AqueousSSTTDYQIAYADISGPTICNVAKGPVVLEENDILKIESSVTSGISGIISILEINRD
Ga0208645_121044613300025853AqueousTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0209932_102431133300026183Pond WaterAYANISGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0209929_115617323300026187Pond WaterKAIVTDSSATTDYQIAYADISGPTICNIAKGPVILEENDVLKIESSVTSGISAIISILEINRD
Ga0208951_119481623300027621Freshwater LenticDYQIAYASITGPTICNLASGPIVLEEGDILKIASSTITGISAIVSILEMNREDR
Ga0209536_10100580413300027917Marine SedimentAATTYQIAHAEISGPTICNVAKGPIVLEENDILLLESSDTSGISAIISILEINRD
(restricted) Ga0233414_1059101413300028045SeawaterYASISGPTICNIAKGPVILEKNDILKIESSVTSGISGIISILEINRD
Ga0316203_123703333300032274Microbial MatSATTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIISILEINRE
Ga0316202_1058633113300032277Microbial MatSSASTDYQIAYADISGPTICNVAKGPVVLEENDVLKIESSVAAGISAIISILEINRD
Ga0348335_019591_2_1333300034374AqueousSGPTICNVAKGPVVLEENDILLLESSDTSGISAIISILEINRD
Ga0348335_054453_1363_15153300034374AqueousQIAHAEISGPTICNVAKGPVVLEENDILLLESSDTSGISAIISILEINRD
Ga0348336_042243_1_1623300034375AqueousTDYQIAYADITGPTICNVAKGPVVLEENDVLKIESSVTSGISAVISILEINRE
Ga0348336_158718_521_6583300034375AqueousDITGPTICNVAKGPVVLEENDVLKIESSVTSGISGIVSILEINRE
Ga0348337_165585_465_5993300034418AqueousISGPTICNVAKGPVVLEENDILLLESSDTSGISAVISILEINRD


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