2222084000: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2

Overview

Basic Information

• IMG/M Taxon OID: 2222084000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0050523 | Gp0052442 | Ga0011219
• Sample Name: Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2
• Sequencing Status: Finished
• Sequencing Center: Alabama State University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45956929
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Blowout, Alabama, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → oil spill → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Alabama
• Coordinates
  • Lat. (^o): 30.15
  • Long. (^o): -88.446
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001040	Metagenome / Metatranscriptome	795	Y
F002907	Metagenome / Metatranscriptome	521	Y
F005727	Metagenome / Metatranscriptome	392	Y
F008665	Metagenome / Metatranscriptome	330	Y
F009400	Metagenome / Metatranscriptome	318	Y
F011752	Metagenome / Metatranscriptome	287	Y
F018292	Metagenome	236	Y
F021968	Metagenome / Metatranscriptome	216	Y
F024678	Metagenome / Metatranscriptome	205	Y
F040079	Metagenome / Metatranscriptome	162	Y
F072023	Metagenome / Metatranscriptome	121	Y
F101262	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2222088108	Not Available	515
2222089391	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Nodensvirus → Synechococcus virus SPM2	514
2222098421	Not Available	507
2222101959	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	504
2222165527	Not Available	540
2222166133	Not Available	539
2222168732	Not Available	534
2222177319	Not Available	523
2222177661	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp.	523
2222177710	Not Available	523
2222180387	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
2222088108	2222090337	F005727	MIKALTRSRSADFHRQTMLKIIVIAGLTFLLWEPIKPVRVVTADVLYTAG
2222089391	2222092192	F072023	VIAFFDKDKEGYNMRTIGDRFFEDKDAWVVGKYGLEFLNAIFQIEQDEEELK
2222093079	2222097645	F040079	MYEVGMGVIRKYRTDVAVTGQITSVHEDADGETLVTVMYDDGAVKVYTENAMDNPRMIVTEEVIW
2222098421	2222105448	F011752	MSSPDISEKITMATTTEDIVAHVRGWSLDRAADKSISKSDARSILAEFYEWIEPEGEELEIVSLEPED
2222101959	2222110591	F001040	LSRKGGFGFPFLLFLIFIIKVTIWAVPRTKYEMFADIRYDGRLVDVLDRIRAIRLVLMVHIEQDLGPNKELVKIKILTPYPARRTFQAIRQLCLGKIETLKDMSYRETTLTKLS
2222165527	2222190093	F009400	MSSMTGLNATALYLWAGLDYYFFPLLIWQLVAGLLARRLLQAGIPTGWR
2222166133	2222191068	F024678	MRVALKLFLFFIGMALSMLGIMVALHSQQHTVLGVLILFSGVTTIWGSLPSYD
2222168732	2222195162	F021968	EYTSKLETIRENYFPSEVKKADEEQLHEQVEDTDADKEKAIADPFVAAVSNAIKKQK
2222177319	2222208321	F008665	ELRMQISRIVKENRLIDSKSFNELPPLMKEAMRDVFDLIEKETGNIIERFEGAVAKVSEFHGINIEKFYEYVDKEVREQLGEK
2222177661	2222208836	F018292	MALNGKLLKEKPSLKEVRDHFKGKGGGPESESHIVDCNADKKDGFVWVYSNKADATKIIDRCGDAILDYSFLDSGVQLKIARKAFRGIHCAFRNVKDKDD
2222177710	2222208917	F101262	TRANTARNRQRDAERMNEQSDGAGAISGRNPKGEGRSSS
2222180387	2222212978	F002907	MKQDPYWFFRKWGIQEPSPLEVLEKKIQELEDRVRLLEEENVGQSNALYECWNSLDARIDILAENKTDVRGS