2209111015: Tailings pond microbial communities from Northern Alberta -TP6_2008_2010:

Overview

Basic Information

• IMG/M Taxon OID: 2209111015
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0047444 | Gp0053159 | Ga0011212
• Sample Name: Tailings pond microbial communities from Northern Alberta -TP6_2008_2010:
• Sequencing Status: Permanent Draft
• Sequencing Center: McGill University
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 232102284
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrocarbon Resource Environments Microbial Communities From Canada And Usa
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Canada: Alberta
• Coordinates
  • Lat. (^o): 57.02
  • Long. (^o): -111.55
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030483	Metagenome / Metatranscriptome	185	Y
F040163	Metagenome	162	Y
F045770	Metagenome / Metatranscriptome	152	Y
F061953	Metagenome / Metatranscriptome	131	Y
F079376	Metagenome / Metatranscriptome	116	Y
F085349	Metagenome / Metatranscriptome	111	Y
F091952	Metagenome / Metatranscriptome	107	Y
F092306	Metagenome / Metatranscriptome	107	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
2218287918	Not Available	507
2218371378	Not Available	520
2218387765	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1478
2218469512	Not Available	516
2218517119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	500
2218574909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	502
2218606266	Not Available	503
2218656992	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
2218287918	2218218681	F030483	VVLVLVFSSCHPRHVSDIRPAMTKEEVVSFWGTTNLITHETTNGTTLEIWEYHFTTSGSICWVTFDQDRVASTGCRPSERRYYSQSGIQSYLEPYYYPPFLYDPYP
2218371378	2218323991	F085349	MVSDMFKYMDLREQLQEEKHKNKALQSLVKNLEDATLELAEIVAANEEALREVQNG
2218387765	2218344371	F092306	MTMPATFYEGPGWQQSSEPILIVDVQEADIWPVDNRSGSGTKDQIDEGLHPIVAIGSQTAAGGRPLNLTGVVISCNISVHGTATDRVMVNIADGAIVRQYVANVLTYNMGAAATFEQAPVVGQPVYVDDSDDLSEGVTCSLSPLNDAGVRNPLAGYLWYCQDEIADGQVGGSRATSTFDTSLLNSLVEQEYCVLLVNAARELA
2218469512	2218447020	F079376	MFDTMITRQPGRPCVSLGVTRVCRTTEEVGRQMRHRESDSFVVPVKAGNAAGGKEATHVSAM
2218517119	2218510044	F091952	VTDDTDPLVFPDLPDEAVVAIDQFLETFYHRFQNHYFAQLHRWYHALDQREHYSEPMPSRPLDDPPF
2218574909	2218585756	F040163	RGGRNAAAPSTTAATRPDCNSTPEEPPTGTMSTPAPELLAEVLRHALDGVAIVEESGGTPRVLYANATLAALLRRPEEWLYGRALDEVEAEAPADPNATVSGVGLRTRLRRSDATMVECERWAVLLDDGRLALYYRPVPRNSPGALAAAVDRSSGLSTPEHLIEVLR
2218606266	2218624537	F061953	MSGPVWKLLRTNGPCDSCGESADELLAVGTVVDYAFRPDYRFCRACYDRYEGRHDELHPKAVAEQQLPPLISRPDSVEDVPE
2218656992	2218685860	F045770	RKRARNGRPDQKRPIRILGEGYTEEWVLDNSAAQTIYKGQPCIIDQSADTVYLRGFIDSLVVAATDIFVGIAAEGPIAVATTDTETANVVKVWVEPTIVGFKSAVYTNADVGDTVYMSDSATLSATPDDNPMLGKLVQVLDGFAYVRLSSPTICAAA