Metagenome / Metatranscriptome Family F091952

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091952
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF
Number of Associated Samples	94
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	19.63 %
% of genes near scaffold ends (potentially truncated)	14.95 %
% of genes from short scaffolds (< 2000 bps)	67.29 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.439 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (24.299 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.533 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.05% β-sheet: 0.00% Coil/Unstructured: 58.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13401	AAA_22	33.64
PF00665	rve	9.35
PF09851	SHOCT	0.93
PF08843	AbiEii	0.93
PF16363	GDP_Man_Dehyd	0.93
PF00139	Lectin_legB	0.93
PF01695	IstB_IS21	0.93
PF06441	EHN	0.93
PF09907	HigB_toxin	0.93
PF11185	DUF2971	0.93
PF08388	GIIM	0.93
PF13474	SnoaL_3	0.93
PF01425	Amidase	0.93
PF00589	Phage_integrase	0.93
PF01041	DegT_DnrJ_EryC1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	9.35
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	9.35
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	9.35
COG4584	Transposase	Mobilome: prophages, transposons [X]	9.35
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.93
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.93
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.93
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.93
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.93
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.93
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	0.93
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.44 %
Unclassified	root	N/A	20.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.44 %
Unclassified	root	N/A	20.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.44 %
Unclassified	root	N/A	20.56 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.22 %
Unclassified	root	N/A	20.56 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	29.91 %
Unclassified	root	N/A	20.56 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.56 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	14.02 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	7.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.87 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.56 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	14.02 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.87 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.56 %
Thauera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	14.02 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.87 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.56 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	7.48 %
Thauera phenylacetica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	2.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.87 %
Thiocapsa marina	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111015\|2218517119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	500	Open in IMG/M
3300000567\|JGI12270J11330_10029660	All Organisms → cellular organisms → Bacteria → Proteobacteria	3223	Open in IMG/M
3300001177\|JGI12634J13548_1008162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa marina	540	Open in IMG/M
3300001593\|JGI12635J15846_10045313	All Organisms → cellular organisms → Bacteria → Proteobacteria	3393	Open in IMG/M
3300002245\|JGIcombinedJ26739_101162431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	660	Open in IMG/M
3300003861\|Ga0031654_10006753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	3405	Open in IMG/M
3300004080\|Ga0062385_10110200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	1352	Open in IMG/M
3300004082\|Ga0062384_100259768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	1058	Open in IMG/M
3300004091\|Ga0062387_100828250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	692	Open in IMG/M
3300004092\|Ga0062389_104110251	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300004152\|Ga0062386_101830884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	506	Open in IMG/M
3300005541\|Ga0070733_10688092	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300005921\|Ga0070766_10404584	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300005994\|Ga0066789_10009560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	4294	Open in IMG/M
3300006055\|Ga0097691_1025506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	2442	Open in IMG/M
3300006162\|Ga0075030_100348525	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300006638\|Ga0075522_10017206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	4620	Open in IMG/M
3300009029\|Ga0066793_10032795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → Thauera phenylacetica	2896	Open in IMG/M
3300009540\|Ga0073899_10030620	All Organisms → cellular organisms → Bacteria → Proteobacteria	4362	Open in IMG/M
3300009633\|Ga0116129_1029312	All Organisms → cellular organisms → Bacteria → Proteobacteria	1839	Open in IMG/M
3300009868\|Ga0130016_10027275	All Organisms → cellular organisms → Bacteria → Proteobacteria	7242	Open in IMG/M
3300009873\|Ga0131077_10090633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	3779	Open in IMG/M
3300010343\|Ga0074044_10062523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2530	Open in IMG/M
3300010343\|Ga0074044_10480534	Not Available	812	Open in IMG/M
3300010379\|Ga0136449_100469955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2198	Open in IMG/M
3300010379\|Ga0136449_103957942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	554	Open in IMG/M
3300010876\|Ga0126361_11174973	Not Available	1138	Open in IMG/M
3300011270\|Ga0137391_10402692	Not Available	1169	Open in IMG/M
3300012533\|Ga0138256_10005172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13838	Open in IMG/M
3300012685\|Ga0137397_10070523	All Organisms → cellular organisms → Bacteria → Proteobacteria	2528	Open in IMG/M
3300012924\|Ga0137413_10823243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	715	Open in IMG/M
3300012925\|Ga0137419_11305255	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300012927\|Ga0137416_10114127	Not Available	2057	Open in IMG/M
3300012927\|Ga0137416_10176725	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300012929\|Ga0137404_11932407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	550	Open in IMG/M
3300012930\|Ga0137407_11575741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	625	Open in IMG/M
3300012956\|Ga0154020_10252527	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300014159\|Ga0181530_10333729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	787	Open in IMG/M
3300014167\|Ga0181528_10002320	All Organisms → cellular organisms → Bacteria → Proteobacteria	11670	Open in IMG/M
3300014169\|Ga0181531_10280004	Not Available	1019	Open in IMG/M
3300014201\|Ga0181537_10583313	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300014489\|Ga0182018_10086956	All Organisms → cellular organisms → Bacteria → Proteobacteria	1847	Open in IMG/M
3300014495\|Ga0182015_10026997	All Organisms → cellular organisms → Bacteria → Proteobacteria	4515	Open in IMG/M
3300014495\|Ga0182015_10040020	All Organisms → cellular organisms → Bacteria → Proteobacteria	3514	Open in IMG/M
3300014495\|Ga0182015_10705140	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300014638\|Ga0181536_10387422	Not Available	628	Open in IMG/M
3300014638\|Ga0181536_10419820	Not Available	594	Open in IMG/M
3300014838\|Ga0182030_10016277	All Organisms → cellular organisms → Bacteria → Proteobacteria	14500	Open in IMG/M
3300014838\|Ga0182030_10096676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4117	Open in IMG/M
3300014838\|Ga0182030_11328756	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300015206\|Ga0167644_1008545	All Organisms → cellular organisms → Bacteria	5295	Open in IMG/M
3300015242\|Ga0137412_10113173	All Organisms → cellular organisms → Bacteria → Proteobacteria	2202	Open in IMG/M
3300015264\|Ga0137403_10771370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	819	Open in IMG/M
3300017946\|Ga0187879_10617434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	602	Open in IMG/M
3300018044\|Ga0187890_10186962	Not Available	1177	Open in IMG/M
3300019270\|Ga0181512_1654449	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300019887\|Ga0193729_1136831	Not Available	897	Open in IMG/M
3300020027\|Ga0193752_1010778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4827	Open in IMG/M
3300020579\|Ga0210407_10676046	Not Available	802	Open in IMG/M
3300020580\|Ga0210403_10638653	Not Available	857	Open in IMG/M
3300021090\|Ga0210377_10135820	Not Available	1616	Open in IMG/M
3300021420\|Ga0210394_10672211	Not Available	908	Open in IMG/M
3300023101\|Ga0224557_1030050	All Organisms → cellular organisms → Bacteria → Proteobacteria	2763	Open in IMG/M
3300024330\|Ga0137417_1011298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	1314	Open in IMG/M
3300025155\|Ga0209320_10017293	All Organisms → cellular organisms → Bacteria → Proteobacteria	3517	Open in IMG/M
3300025463\|Ga0208193_1033266	Not Available	1247	Open in IMG/M
3300025579\|Ga0207927_1014221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2589	Open in IMG/M
3300025588\|Ga0208586_1005362	All Organisms → cellular organisms → Bacteria → Proteobacteria	3489	Open in IMG/M
3300025619\|Ga0207926_1069370	Not Available	919	Open in IMG/M
3300025679\|Ga0207933_1079549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1071	Open in IMG/M
3300026291\|Ga0209890_10010506	All Organisms → cellular organisms → Bacteria → Proteobacteria	3773	Open in IMG/M
3300027334\|Ga0209529_1068022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	605	Open in IMG/M
3300027432\|Ga0209421_1008531	All Organisms → cellular organisms → Bacteria → Proteobacteria	1924	Open in IMG/M
3300027605\|Ga0209329_1085072	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300027660\|Ga0209736_1210391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	503	Open in IMG/M
3300027694\|Ga0209170_1011037	All Organisms → cellular organisms → Bacteria → Proteobacteria	3527	Open in IMG/M
3300027698\|Ga0209446_1097845	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300027854\|Ga0209517_10003405	All Organisms → cellular organisms → Bacteria → Proteobacteria	21613	Open in IMG/M
3300027895\|Ga0209624_10805762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	616	Open in IMG/M
3300027896\|Ga0209777_10836802	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027902\|Ga0209048_10048095	All Organisms → cellular organisms → Bacteria → Proteobacteria	3499	Open in IMG/M
3300028536\|Ga0137415_10175661	All Organisms → cellular organisms → Bacteria	1969	Open in IMG/M
3300028863\|Ga0302218_10313205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	510	Open in IMG/M
3300029882\|Ga0311368_10168518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1769	Open in IMG/M
3300029910\|Ga0311369_10597722	Not Available	921	Open in IMG/M
3300029944\|Ga0311352_10843273	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300029945\|Ga0311330_10459638	Not Available	1037	Open in IMG/M
3300030007\|Ga0311338_11270206	Not Available	694	Open in IMG/M
3300030503\|Ga0311370_10779507	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300031228\|Ga0299914_10892249	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300031234\|Ga0302325_10211802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	3311	Open in IMG/M
3300031234\|Ga0302325_12109082	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300031236\|Ga0302324_100162672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	3634	Open in IMG/M
3300031236\|Ga0302324_100790949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	1322	Open in IMG/M
3300031236\|Ga0302324_100936242	Not Available	1186	Open in IMG/M
3300031258\|Ga0302318_10262038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	850	Open in IMG/M
3300031649\|Ga0307514_10249184	Not Available	1053	Open in IMG/M
3300031670\|Ga0307374_10004199	All Organisms → cellular organisms → Bacteria → Proteobacteria	24086	Open in IMG/M
3300031672\|Ga0307373_10406761	Not Available	787	Open in IMG/M
3300031708\|Ga0310686_104521647	Not Available	872	Open in IMG/M
3300031708\|Ga0310686_115229424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	547	Open in IMG/M
3300031708\|Ga0310686_115623179	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300031837\|Ga0302315_10705934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	529	Open in IMG/M
3300031965\|Ga0326597_10318059	All Organisms → cellular organisms → Bacteria → Proteobacteria	1763	Open in IMG/M
3300032160\|Ga0311301_10183916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera	3642	Open in IMG/M
3300033818\|Ga0334804_110279	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300034163\|Ga0370515_0481776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.52%
Engineered	Engineered	6.54%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.96%
Aquatic	Environmental → Aquatic	20.56%
Wastewater	Engineered → Wastewater	6.54%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.01%
Freshwater	Environmental → Aquatic → Freshwater	19.63%
Peat	Environmental → Terrestrial → Peat	14.95%
Activated Sludge	Engineered → Wastewater → Activated Sludge	5.61%
Sediment	Environmental → Aquatic → Sediment	0.93%
Roots	Host-Associated → Plants → Roots	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.58%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.15%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	5.61%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.80%
Clay	Environmental → Terrestrial → Soil → Clay	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.23%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.02%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.61%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	5.61%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.21%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.67%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.74%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.87%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.87%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111015	Tailings pond microbial communities from Northern Alberta -TP6_2008_2010:	Engineered	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001177	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009540	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Ph	Engineered	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012533	Active sludge microbial communities from wastewater in Klosterneuburg, Austria - KNB2014incub_MG	Engineered	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012956	Active sludge microbial communities from wastewater, Klosterneuburg, Austria - Klosneuvirus_20160825_MG	Engineered	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019270	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025679	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027694	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_bulk (SPAdes)	Engineered	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031672	Soil microbial communities from Risofladan, Vaasa, Finland - OX-2	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2218510044	2209111015	Hydrocarbon Resource Environments	VTDDTDPLVFPDLPDEAVVAIDQFLETFYHRFQNHYFAQLHRWYHALDQREHYSEPMPSRPLDDPPF
JGI12270J11330_100296602	3300000567	Peatlands Soil	MNDDTDPFVFPDMPDEAVVAIDQFLEAFYHHFQNHYFAQMHRWYHALDERESNSGPPSILPLKDPPF*
JGI12634J13548_10081621	3300001177	Forest Soil	MADDTDPFVFPEMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQREHYNDPMPSRPLADPPF*
JGI12635J15846_100453134	3300001593	Forest Soil	MTDDADPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESDRGPPPTRPLKDPPF*
JGIcombinedJ26739_1011624312	3300002245	Forest Soil	MADDTDPLVFPDMPDEAVVAIDQFLEAFYHHFQNRYGIQLHRWYHALDQRESYNNPMPSRPLPDPPF*
Ga0031654_100067534	3300003861	Freshwater Lake Sediment	MNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF*
Ga0062385_101102002	3300004080	Bog Forest Soil	MSDDTDPFVFPDMPDEAVVAIDQFLEAFYNRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF*
Ga0062384_1002597682	3300004082	Bog Forest Soil	MDEDTDPFLFPDIPDEAVIAIDQFLEAFYHRFQNHYFAQMHRWYHAIDQREHYNDPMPSRPLPDPPF*
Ga0062387_1008282501	3300004091	Bog Forest Soil	MSEQTDPFIFPDMPDEAVVAIDQFLETFNRRFQNHYFAQMHRWYHALDEREASRGHSPILPLKDPPF*
Ga0062389_1041102512	3300004092	Bog Forest Soil	GTDPFVFHDMPDEAAVAIDQFLEAFYQHFQNRYGIQLHRWYHALDQRESYNNPMPSRPLPDPPF*
Ga0062386_1018308841	3300004152	Bog Forest Soil	MNQDTDPFVFPEMPDEAVVAIDQFLKAFYHHFQNHYFAQMHRWYHAIDQRERYTDPMPSRPLDDPPF*
Ga0070733_106880922	3300005541	Surface Soil	MTDETDPFVFPDMPDEAVVAVDQFLEAFYHGFQNRYGQQLYRWYHDLDEREARHNPIPSRPPPLADPPF*
Ga0070766_104045842	3300005921	Soil	MDQDTDPFVFPDMPDEAVVAIDQFLEAFYNHFQNHYFAQMHRWYHALDEREHYNDPIPWRPLPDPPF*
Ga0066789_100095602	3300005994	Soil	MTEDTDPFVFPDMPDEAVVAIDQFLEAFYNRFQNHYFAQMHRWYHALDQREQYNDPMPSRPLPDPPF*
Ga0097691_10255062	3300006055	Arctic Peat Soil	MNDDTNPFVFPDMPDEAVVAIDQFLEAFYLHFQNHYFAQMHRWYHALDERKSNRGPPPTLPLKDPPF*
Ga0075030_1003485252	3300006162	Watersheds	MANDADPFVFPDMPDEAVVAIDQFLAAFYNHFQNHYFAQMHRWYHALDEREASRGPPPTLPLKDPPF*
Ga0075522_100172061	3300006638	Arctic Peat Soil	MTDDADPFMFPDIPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQREHYNDPMPSRPLSDPPF*
Ga0066793_100327954	3300009029	Prmafrost Soil	MADETDPFVFPEMPDEAVVAIDQFLEAFYLHFQNHYFAQMHRWYHALDERKSNRGPPPTLPLKDPPF*
Ga0073899_100306202	3300009540	Activated Sludge	MDEDTDRFVFPDMPDEAVVAIEQFLEAFYQRFQNHYFAQMHRWYHALEQREHYSDPMPSRPLPDPPF*
Ga0116129_10293122	3300009633	Peatland	MSEDTHPFIFPDMPDEAVLAIDQFLETFYHRFQNHYFAQMHRCYHALDEREANRGLPPTPPLKDPPF*
Ga0130016_100272752	3300009868	Wastewater	MNEDTDRFVFPDMPDEAVVAINQFLEAFYHRFQNHYFAQLHRWYHALEQPEHYNDPMPSRSLPDPPF*
Ga0131077_100906335	3300009873	Wastewater	MDEDTDRFVFPDMSDEAVVAIDQFLEAFYQRFQNHYFAQMHRWYHALGQREHYSDPMPSRPLPDPPF*
Ga0074044_100625234	3300010343	Bog Forest Soil	KPRAAPPGLADVDQDSDPFLFPEMPDEAVVAIDQFLEAFYHHFQNHYFAQMHRWYHAIDQRERYTDPMPSRPLDDPPF*
Ga0074044_104805342	3300010343	Bog Forest Soil	VNDDNDPFIFPDMPDEAVAAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESNRGPPPTLPLK
Ga0136449_1004699553	3300010379	Peatlands Soil	MNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWCHALDERESNRGPPPTLPLKDPPF*
Ga0136449_1039579422	3300010379	Peatlands Soil	MTDDADPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHAIDQREHYNDPMPSRPLPDPPF*
Ga0126361_111749732	3300010876	Boreal Forest Soil	MTDDADPFLFPDMPDEAVVAIDQFLETFYVRFQNHYFDQMYRWYQTLDQREHTQDISASRPLPDPPF*
Ga0137391_104026922	3300011270	Vadose Zone Soil	MTEDADPFMFLDMPDEAVVAIDQFLEAFYHRFQNHYFAQMPRWYRAIDQREHYNDPMPSRPLLDPPF*
Ga0138256_1000517212	3300012533	Active Sludge	VPRRAASPGLADMNEDTDRFVFPDMPDEAVVAIDQFFEAFYHRFQSHYFAPMHRWYHALEQREHCNDSMPSRPLPDLPF*
Ga0137397_100705231	3300012685	Vadose Zone Soil	VRPVLADMNEETDPFAFPELPDEAVVALDQFLEAFYQHFQNHYFVQMHRWYHALDQRQRYNDPMPSPPLKDPPF*
Ga0137413_108232431	3300012924	Vadose Zone Soil	KAVSAGLCAAGDSNSASRPGRGAGMSEETDPFIFPDMPDEAVVAIDLFLEAFYNRFQNHYFAQMHRCYHALDERVANRGPPPTLPLKDPPF*
Ga0137419_113052551	3300012925	Vadose Zone Soil	MNEETDPFAFPELPDEAVVALDQFLEAFYQHFQNHYFVQMHRWYHALDQRQRYNDPMPSPPLKDPPF*
Ga0137416_101141271	3300012927	Vadose Zone Soil	MNDDTNPFVFPEMPDEAVVAIDQFLEAFYHHFQNHYFAQMHRWYHAIDQRERYNDPMPSRPLDDPPL*
Ga0137416_101767252	3300012927	Vadose Zone Soil	MDADTDPFVFPDMPDEAVIAIDQFLEAFYHRFQNHYFAQMHRWYHALDQQERSREPMPSRPLPDPPF*
Ga0137404_119324072	3300012929	Vadose Zone Soil	MMSDDTDLFVFPELPDEAVVALDQFLEAFYNRFQNHYFAQMHRRYHALDEREHYHDPLSSPPLKDPPF*
Ga0137407_115757411	3300012930	Vadose Zone Soil	MSDDTDLFIFPELPDEAVVALDQFLEAFYNHFQNHYFAQMHSWYHALDQRQRYNDQMPLPLDDPPF*
Ga0154020_102525272	3300012956	Active Sludge	MNEDTDRFVFPDMPDEAVVAIDQFFEAFYHRFQSHYFAPMHRWYHALEQREHCNDSMPSRPLPDLPF*
Ga0181530_103337292	3300014159	Bog	MDEDPDPLVFPDMPDEAVVAINQFLEAFYTHFQNHYFAQMHRWYHKLDRRQHYDDQIPLPLDDPPF*
Ga0181528_100023208	3300014167	Bog	MADDADPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDEREADRAPPPTLPLKDPPF*
Ga0181531_102800041	3300014169	Bog	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQRHRWYHALDEREAQHNPMLSRPVPLEDPPF*
Ga0181537_105833132	3300014201	Bog	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAQHNPMLSRPVPLEDPPF*
Ga0182018_100869562	3300014489	Palsa	MDEDTDPFIFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQRERYNDPMPSRSLPDPPF*
Ga0182015_100269976	3300014495	Palsa	MTDDADPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFTQMHRWYHALDERESDRGPSPTLPLKDPPF*
Ga0182015_100400201	3300014495	Palsa	MNDDTDPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESNPGLPPTQPLKDPPF*
Ga0182015_107051401	3300014495	Palsa	MNDDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDTPF*
Ga0181536_103874221	3300014638	Bog	MDEDPDPLVFPDMPDEAVVAINQFLEAFYTHFQNHYFAQMHRWYHKLDRRQHYDDQIPL
Ga0181536_104198202	3300014638	Bog	MADDADPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDEREADRAPPPTLPLKDP
Ga0182030_1001627710	3300014838	Bog	MDQDSDPFVFPEMPDEAVLAIDQFLEGFYNHFQNHYFAQMHRWYHAIDQREHYNDPMPSRPLPDPPF*
Ga0182030_100966761	3300014838	Bog	MDQDTDPFVFPDVPDEAVAVIHEFLEEFYLRFQNHYFAQMHRWYHALDELEVRHDPTPSPPLKDSPF*
Ga0182030_113287562	3300014838	Bog	MANDADPFVFPDMPDDAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDAREANGDPAPTQPLKDPPF*
Ga0167644_10085452	3300015206	Glacier Forefield Soil	MPDEAVVGIDQFLEAVYHRFQNHYFAQMHRWYDALDERESNRGSPPTLPLKDPPF*
Ga0137412_101131731	3300015242	Vadose Zone Soil	MSEETDPFIFPDMPDEAVVAIDLFLEAFYNRFQNHYFAQMHRCYHALDERVANRGPPPTLPLKDPPF*
Ga0137403_107713701	3300015264	Vadose Zone Soil	RPGRGAGMSEETDPFIFPDMPDEAVVAIDLFLEAFYNRFQNHYFAQMHRCYHALDERVANRGPPPTLPLKDPPF*
Ga0187879_106174342	3300017946	Peatland	MDEDTDPFIFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQRERYNDPMPSRSLPDPPF
Ga0187890_101869622	3300018044	Peatland	MADDADPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDEREADRAPPPTLPLKDPPF
Ga0181512_16544491	3300019270	Peatland	DDADPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDEREADRAPPPTLPLKDPPF
Ga0193729_11368311	3300019887	Soil	MSEETDPFIFPDMPDEAVVAIDLFLEAFYNRFQNHYFAQMHRCYHALDERVANRGPPPTLPLKDPPF
Ga0193752_10107785	3300020027	Soil	MNEDTDRFVFPDLPDEAVVAIDEFLETFYHRFQNHYFAQMHRWYHALEQREHYNDPMPSRPLDDPPF
Ga0210407_106760461	3300020579	Soil	MDQDTDPFVFPDMPDEAVVAIDQILEAFYNHFQNHYFAQMHRWYHALDEREHYNDPIPWRPLPDPPF
Ga0210403_106386532	3300020580	Soil	MDQDTDPFVFPDMPDEAVVAIDQFLEAFYNHFQNHYFAQMHRWYHALDEREHYNDPIPWRPLPDPPF
Ga0210377_101358202	3300021090	Groundwater Sediment	MNEDTDRFVFPDMPDEAMVAIDQFLEAFYHRFRNHYFAQMHRWYHALEQREHYNDPMPSRPLPDPPF
Ga0210394_106722111	3300021420	Soil	MTEDTDPFVFPDMPDEAVVAIHQFLEAFYHRFENHYFAQMHRWYHGLDERESDRRCATN
Ga0224557_10300504	3300023101	Soil	MNDATDPFVFPDMPDEAVVAIDKFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF
Ga0137417_10112981	3300024330	Vadose Zone Soil	MDADTDPFVFPDMPDEAVIAIDQFLEAFYHRFQNHYFAQMHRWYHALDQQERSREPMPSRPLPDPPF
Ga0209320_100172931	3300025155	Soil	MHDDTDLFVFPELPDEAVVALDQLLEAFYNHFQNHYFAQMHRWYHALDQRQRDNDDQMPLPLDDPSF
Ga0208193_10332661	3300025463	Peatland	MSEDTHPFIFPDMPDEAVLAIDQFLETFYHRFQNHYFAQMHRCYHALDEREANRGLPPTPPLKDPPF
Ga0207927_10142213	3300025579	Arctic Peat Soil	MNDDTNPFVFPDMPDEAVVAIDQFLEAFYLHFQNHYFAQMHRWYHALDERKSNRGPPPTLPLKDPPF
Ga0208586_10053624	3300025588	Arctic Peat Soil	MTDDADPFMFPDIPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQREHYNDPMPSRPLSDPPF
Ga0207926_10693702	3300025619	Arctic Peat Soil	MNDDTNPFVFPDMPDEAVVAIDQFLEAFYLHFQNHYFAQMHRWYHALDERKSNRGPP
Ga0207933_10795492	3300025679	Arctic Peat Soil	MDEDPDPLVFPDMPDEAVVAINQFLEAFYTHFQNHYFAQMHRWHHKPDRCQHYDDQIPLPLEDPPF
Ga0209890_100105065	3300026291	Soil	MTEDTDPFVFPDMPDEAVVAIDQFLEAFYNRFQNHYFAQMHRWYHALDQREQYNDPMPSRPLPDPPF
Ga0209529_10680221	3300027334	Forest Soil	MTDDADPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESDRGPPPTRPLKDPPF
Ga0209421_10085312	3300027432	Forest Soil	MADDTDPFVFPEMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQREHYNDPMPSRPLADPPF
Ga0209329_10850721	3300027605	Forest Soil	MADDTDPLVFPDMPDEAVVAIDQFLEAFYHHFQNRYGIQLHRWYHALDQRESYNNPMPSRPLPDPPF
Ga0209736_12103911	3300027660	Forest Soil	MDQDTNPFVFPDMPDEAVVAIDQFLEAFYNHFQNHYFAQMHRWYHALDQRENYHDPMPWRPLDDPPF
Ga0209170_10110374	3300027694	Activated Sludge	MDEDTDRFVFPDMPDEAVVAIEQFLEAFYQRFQNHYFAQMHRWYHALEQREHYSDPMPSRPLPDPPF
Ga0209446_10978451	3300027698	Bog Forest Soil	MSDDTDPFVFPDMPDEAVVAIDQFLEAFYNRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF
Ga0209517_1000340518	3300027854	Peatlands Soil	MNDDTDPFVFPDMPDEAVVAIDQFLEAFYHHFQNHYFAQMHRWYHALDERESNSGPPSILPLKDPPF
Ga0209624_108057622	3300027895	Forest Soil	MAEDTDPFTFPELPDEAAVALDQFLEAFYHHFQNHYSLQLYRCYHALDEREARNPMPSRQRPLEDPPF
Ga0209777_108368021	3300027896	Freshwater Lake Sediment	MNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPT
Ga0209048_100480954	3300027902	Freshwater Lake Sediment	MNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWYHALDERESNRGPPPTLPLKDPPF
Ga0137415_101756613	3300028536	Vadose Zone Soil	MDADTDPFVFPDMPDEAVIAIDQFLEAFYHRFQNHYFAQMHRCYHALDQRERSREPMPSRPLPDPPF
Ga0302218_103132051	3300028863	Palsa	MSVDTDPFIFPDMPDEAVAAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESDGGPPPSVPLKDP
Ga0311368_101685181	3300029882	Palsa	MSVDTDPFIFPDMPDEAVAAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESDGGPPPSVPLKDPPF
Ga0311369_105977222	3300029910	Palsa	MSEETGPFIFPEMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAQHNPMLSRPVPLEDPPF
Ga0311352_108432732	3300029944	Palsa	MTDDADPFVFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRCYHALDEREANRGPPSTLPLKDPPF
Ga0311330_104596382	3300029945	Bog	MANDADPFVFPDMPDEAVVAIDRLLEAFYNHFQNHYFAQMNRWYHALDEREANGGPAPTLPLKDPPF
Ga0311338_112702061	3300030007	Palsa	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRCYHALDERESDGALPPTLPLKD
Ga0311370_107795072	3300030503	Palsa	VNEDTDPFIFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRCYHALDEREANRGPPSTLPLKDPPF
Ga0299914_108922492	3300031228	Soil	LADMNQDTDPFVFPDLPEEAVVAIDQFLEAFYHRFQSHYFAQLHRWYHALDQRAQYNDPMPSRPLPDPPF
Ga0302325_102118024	3300031234	Palsa	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAQHNPMLSRPVPLEDP
Ga0302325_121090822	3300031234	Palsa	MTDDADPFVFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRCYHALDERESDGALPPTLPLKDPSF
Ga0302324_1001626725	3300031236	Palsa	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAQHNPMLSRPVPLEDPPF
Ga0302324_1007909493	3300031236	Palsa	MSEETGPFIFPEMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAHQDPMPSRPTPIEDPPF
Ga0302324_1009362422	3300031236	Palsa	MDEDTDPFIFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDQRERYNDPMPSRSLPDLPF
Ga0302318_102620382	3300031258	Bog	MANDADPFVFPDMPDEAVVAIDRLLEAFYNHFQNHYFAQMHRWYHALDEREANGGPAPTLPLKDPPF
Ga0307514_102491842	3300031649	Ectomycorrhiza	MNEDTDRLVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQLHRWYHALDQREHYNDPMPSRPLPDPPF
Ga0307374_1000419912	3300031670	Soil	MDQESDPFVFPEMPDEAVVAIDQFLEAFYNHFQNHYFAQMHRWYHALDQRERYHDPMPSRPLKDPPF
Ga0307373_104067612	3300031672	Soil	VDDDPNPFTFPELPDEAVAALDRLLEDFYHRFQNHYGLQLYRWYHALDEREARHNPMPSRSPPLSDPPF
Ga0310686_1045216472	3300031708	Soil	MADDADPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALEERESDPGPPPTRPLKDPPF
Ga0310686_1152294241	3300031708	Soil	MNDDTDPFVFPDMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDERESNGALPPTQPLKDPPF
Ga0310686_1156231792	3300031708	Soil	MADDADPFVFPDMPDEAVVAIDQFLEDFYLCFQNHYFAQMHRWYHALDEREANRGPPSRPPLKDPPF
Ga0302315_107059342	3300031837	Palsa	MSEETDPFIFPNMPDEAVVAIDQFLEAFYHRFQNHYFAQMHRWYHALDEREAQHNPMLSRPVPL
Ga0326597_103180592	3300031965	Soil	MRDDTDLFVFPELPDEAVVALDQLLEAFYNHFQNHYFAQMHRWYHALDQRQHYDDDQMPLPLDDPPF
Ga0311301_101839162	3300032160	Peatlands Soil	VPGLADMNEDTDPFVFPDMPDEAVVAIDQFLEAFYLRFQNHYFAQMHRWCHALDERESNRGPPPTLPLKDPPF
Ga0334804_110279_387_590	3300033818	Soil	MANDTDPFVFPDMPDEAVVAIDQFLEAFYNHFQNHYFAQMHRWYHALDEREADRAPPPTLPLKDPPF
Ga0370515_0481776_49_252	3300034163	Untreated Peat Soil	MSKETDPFIFPDMPDEAVVAIDQFLEAFYHRFQNRYFAQMHRWYHALDEREANRGPSPILPLKDPPF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091952

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences