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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2209111013 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0050527 | Gp0053156 | Ga0011303 |
| Sample Name | Subtropical soil microbial communities from Bundaberg Australia-rainforest |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Australian Genome Research Facility |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 24947263 |
| Sequencing Scaffolds | 34 |
| Novel Protein Genes | 40 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 28 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 6 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subtropical Soil Microbial Communities From Bundaberg Australia |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Subtropical Soil → Subtropical Soil Microbial Communities From Bundaberg Australia |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → land → sand |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Austrailia: Bundaberg, Queensland | |||||||
| Coordinates | Lat. (o) | -24.867 | Long. (o) | 152.351 | Alt. (m) | N/A | Depth (m) | 0 to .03 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000203 | Metagenome / Metatranscriptome | 1619 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F000734 | Metagenome / Metatranscriptome | 915 | Y |
| F001346 | Metagenome / Metatranscriptome | 718 | Y |
| F001418 | Metagenome / Metatranscriptome | 698 | Y |
| F001758 | Metagenome / Metatranscriptome | 640 | Y |
| F003269 | Metagenome / Metatranscriptome | 496 | Y |
| F003427 | Metagenome / Metatranscriptome | 487 | Y |
| F004323 | Metagenome / Metatranscriptome | 443 | Y |
| F006338 | Metagenome / Metatranscriptome | 375 | Y |
| F011643 | Metagenome / Metatranscriptome | 288 | Y |
| F014312 | Metagenome / Metatranscriptome | 264 | Y |
| F014854 | Metagenome / Metatranscriptome | 259 | Y |
| F015698 | Metagenome / Metatranscriptome | 252 | Y |
| F018180 | Metagenome / Metatranscriptome | 236 | Y |
| F023129 | Metagenome / Metatranscriptome | 211 | Y |
| F028897 | Metagenome / Metatranscriptome | 190 | Y |
| F056192 | Metagenome / Metatranscriptome | 138 | Y |
| F056193 | Metagenome / Metatranscriptome | 138 | N |
| F076133 | Metagenome / Metatranscriptome | 118 | Y |
| F081239 | Metagenome / Metatranscriptome | 114 | Y |
| F087250 | Metagenome / Metatranscriptome | 110 | Y |
| F104505 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| DRAFT_Contig_102414 | Not Available | 505 | Open in IMG/M |
| DRAFT_Contig_102970 | Not Available | 544 | Open in IMG/M |
| DRAFT_Contig_104136 | Not Available | 549 | Open in IMG/M |
| DRAFT_Contig_108446 | Not Available | 511 | Open in IMG/M |
| DRAFT_Contig_113269 | Not Available | 501 | Open in IMG/M |
| DRAFT_Contig_118544 | Not Available | 526 | Open in IMG/M |
| DRAFT_Contig_122824 | Not Available | 545 | Open in IMG/M |
| DRAFT_Contig_126236 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 516 | Open in IMG/M |
| DRAFT_Contig_140757 | Not Available | 518 | Open in IMG/M |
| DRAFT_Contig_147979 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 501 | Open in IMG/M |
| DRAFT_Contig_151969 | Not Available | 506 | Open in IMG/M |
| DRAFT_Contig_19108 | Not Available | 505 | Open in IMG/M |
| DRAFT_Contig_19691 | Not Available | 514 | Open in IMG/M |
| DRAFT_Contig_25580 | Not Available | 519 | Open in IMG/M |
| DRAFT_Contig_30295 | Not Available | 528 | Open in IMG/M |
| DRAFT_Contig_32081 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 501 | Open in IMG/M |
| DRAFT_Contig_40329 | Not Available | 533 | Open in IMG/M |
| DRAFT_Contig_40399 | Not Available | 549 | Open in IMG/M |
| DRAFT_Contig_43006 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 501 | Open in IMG/M |
| DRAFT_Contig_46200 | Not Available | 518 | Open in IMG/M |
| DRAFT_Contig_47576 | Not Available | 520 | Open in IMG/M |
| DRAFT_Contig_53190 | Not Available | 511 | Open in IMG/M |
| DRAFT_Contig_54809 | Not Available | 531 | Open in IMG/M |
| DRAFT_Contig_56253 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 527 | Open in IMG/M |
| DRAFT_Contig_57470 | Not Available | 548 | Open in IMG/M |
| DRAFT_Contig_59587 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 504 | Open in IMG/M |
| DRAFT_Contig_64465 | Not Available | 514 | Open in IMG/M |
| DRAFT_Contig_67421 | Not Available | 502 | Open in IMG/M |
| DRAFT_Contig_70019 | Not Available | 542 | Open in IMG/M |
| DRAFT_Contig_71237 | Not Available | 524 | Open in IMG/M |
| DRAFT_Contig_74299 | Not Available | 541 | Open in IMG/M |
| DRAFT_Contig_82665 | Not Available | 549 | Open in IMG/M |
| DRAFT_Contig_92214 | Not Available | 522 | Open in IMG/M |
| DRAFT_Contig_92818 | Not Available | 538 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| DRAFT_Contig_102414 | DRAFT_00596600 | F001418 | EVGFTSSSGSVRALSVNAKKGLSDDTRLEAARHRVK |
| DRAFT_Contig_102970 | DRAFT_00438790 | F001758 | VTGERLSQAGWLSPSKAEPRGSGAEAGFTSSSGGVRALSVNAKKGLCGEER |
| DRAFT_Contig_104136 | DRAFT_00000070 | F011643 | MTRPGETPDGSAERDNPLKGKPWTWQRGETNPQRFLAEEAVEGVRNAEDGT |
| DRAFT_Contig_108446 | DRAFT_00531880 | F001346 | VKTFRELGDIKKGTAELWKKSNLRVKRPDPWHRANALSKTAAVLVQDGEDAEKKSQLCLYLVRKPVAQPSVEAS |
| DRAFT_Contig_113269 | DRAFT_00052910 | F087250 | RLVGLAPLKAGSQGSGAEAEFTSSSGEVRASLVNAKKGLSNEER |
| DRAFT_Contig_115735 | DRAFT_00438930 | F056193 | FPSDPARRFDALRALAGPGLPSRIAPDGGPPLRFRSPSEVHRSTPAPSRGPEGPHVGRCFLSWALSPYDTCGTTDPHVAGLPTPLRATSGVWVPPSRLPPSSLPTPFGAGASLGFTLQGLLLTTIGTPSGAPCPPGVLHVDSPHPHGERADAAAFRASIPSRARLPFRIPKDPAPPMPDD |
| DRAFT_Contig_118544 | DRAFT_00384630 | F023129 | VSKGNLRVKRSDPWHWANALPKAVADPAQVVKTRIKESQACLNLVRKPVAQPPVQAS |
| DRAFT_Contig_122824 | DRAFT_00405130 | F081239 | AGSQGSGAEAEFTSSSDTFARVSNAKKELGGKERLETVPS |
| DRAFT_Contig_126236 | DRAFT_00468770 | F014312 | TANGVVRLWERVKAERFAVAMTPLVGAERLARKTERFSERPDKNG |
| DRAFT_Contig_129261 | DRAFT_00020270 | F076133 | EGILVCYCADQNAIANPGGTTPPEGPARRTNWARNGDAAAGGERT |
| DRAFT_Contig_140757 | DRAFT_00452460 | F014312 | RERVKAERFALAIDALVEAERLARKTERFSERPDKNG |
| DRAFT_Contig_147979 | DRAFT_00056510 | F014312 | VSRVKAERFALAMTPFVGAERLARKTERFSERPDKNG |
| DRAFT_Contig_151969 | DRAFT_00593480 | F003427 | MVKTRSRNHKRVFTRFACWRLQTPVEASLEASLKILPRKAQDGPATEAESIPLAVENSVGKPAANARPMSARETRAWRT |
| DRAFT_Contig_19108 | DRAFT_00000970 | F015698 | FQVT*FTASLSAGMHGTELCIPERGALCLSARLVAFSCSPPSSMLPGAPLALSETGPVARNGLSLPSNGLRSRGFHSRIEVPGLLLRHLHGNSQVRSAFCSTTGCGSPRSRPLLRFSPWPACFRARSASPPASTPLWDFYLPRNQSVLPESVPISPPSEYARFLLTP |
| DRAFT_Contig_19691 | DRAFT_00492340 | F014312 | TKGTANGVVRLWERVKAERFAVAMTPLVEAERLARKTERFSERPDKNG |
| DRAFT_Contig_25580 | DRAFT_00445600 | F087250 | AGSKGSGEEAEFTSSSGDVRASSVNPKKGLSDKGR |
| DRAFT_Contig_30295 | DRAFT_00361250 | F001346 | MSKNTAELWKKSNLRVKRPDPWHRANALSKTAADPGQDGEDAEKKSQLCLYLVRRSVAQPSVEAS |
| DRAFT_Contig_30295 | DRAFT_00361260 | F006338 | VVLENGMLGGPATRPKTPLAVANSVGKLAAAEMWRQMPARERELGELPSPILKKKQN |
| DRAFT_Contig_32081 | DRAFT_00062900 | F014312 | AVRLWERVKAERFAVAMTPLVEAERLARKTERFSERPDKNG |
| DRAFT_Contig_35860 | DRAFT_00580730 | F000203 | EFFFFVGMGVRQALFPMPALGAIKAADFPTPFSTASGVIGLVAGPSRALPPLDY |
| DRAFT_Contig_40329 | DRAFT_00287700 | F000344 | MRPKHPHAAESGVGKHTARESERVQACAAGKERVTNAHPHKKKK |
| DRAFT_Contig_40399 | DRAFT_00000120 | F001758 | VTGEKLGQAGWPGSSESGSKETKGEAEFTSSSGVVRALSVYAKKGLRNEERLETVPDSVK |
| DRAFT_Contig_43006 | DRAFT_00056300 | F028897 | EEQLGYGTAKAVIASRAVTVHASTLSAPSQELMARA |
| DRAFT_Contig_46200 | DRAFT_00455770 | F006338 | MLSGPATRPKTPLAVENSVGKLAAAEMWRQMPARERELGELPSPIWS |
| DRAFT_Contig_47576 | DRAFT_00432230 | F000734 | VKTFRELGDVKKDTAELWKKSNLRVKRRDPWHRANALPKAVAVLAQDGEDAETKIAAVS |
| DRAFT_Contig_47576 | DRAFT_00432240 | F000203 | MGVRQTLFPLLAFWRHISAAASFPTLFATASGVSGLVAGPLSIPFSRTTEF |
| DRAFT_Contig_53190 | DRAFT_00525510 | F003427 | MVKTRSRNHKRVFTRFACWRLQTPVEASLEASLKILPPQGAGRPCYEAESIPLAVENSVGKPAANARPMSARERERG |
| DRAFT_Contig_54809 | DRAFT_00318030 | F056192 | RWYVKTIATRRGVKADRATRYGKFLRLKPGRAL*SGRIERS*KGAEARIQTEGSRTGSWQRATRNDRAPSGEKKPGEAGSGKPNGPIEILGRL*RCRPGASTRPRGFAARQTFAAGE*KAASRSKLLPGRTADAHQSYDLRLNKTGREEQRA |
| DRAFT_Contig_56253 | DRAFT_00368140 | F014312 | TANGVVRLWERVKAERFAVAMTPLVGAERLARKTERFSERPDKTGSNH |
| DRAFT_Contig_57470 | DRAFT_00287350 | F001418 | AGFTSSSGSVRALSVNAKKGLRDEERLETVPNSVK |
| DRAFT_Contig_59587 | DRAFT_00017170 | F014312 | RLWERVKAERFALAMTPFVEAERLARRIERFSGRPDKNG |
| DRAFT_Contig_64465 | DRAFT_00499210 | F014312 | GTANGVVRLWERVKAERFALAMTPLVGAEKLARKTERFSERPDKNGVSNH |
| DRAFT_Contig_64539 | DRAFT_00000210 | F014854 | VGSAPLERIARFGGGGRIHQFLWSRSHAAGNAKRNSAARSDKKPLRVGSSSPGWFRAWGNRSYPEGKWLLLCISTGRVTLADSINRLKPPNESHRKVDKRSRRTGKITQARQAA |
| DRAFT_Contig_67421 | DRAFT_00043020 | F006338 | LSGPATRPKTPLAVENSVGKLAAPEMRRLMSAWEREIGE |
| DRAFT_Contig_70019 | DRAFT_00505500 | F104505 | VLYAARRGGPIGCPLRFVLAVSVGTRGLYRSPSAARFRNRLHPLVSFAPLQSAPSRVRRWYRYQQRLPWGSRSLFATLPRSVRATRLPSPGAFPSAAFLTPSTAFSASRLVGLFHPTATSRVRSSGGCCLTSSRVTSSVDTVPSRRWRRTADSVATAATIRRLVLRAFGPLANPLPPLQL |
| DRAFT_Contig_71237 | DRAFT_00405190 | F006338 | LSGPATRPKTPLAVENSVGKLAAPEMRRLMSAWERER |
| DRAFT_Contig_74299 | DRAFT_00538380 | F001758 | RLSQAGWLSPSKAGSQGSGAEAEFTSSSGEVRASLVNAKKGTEQ |
| DRAFT_Contig_82665 | DRAFT_00000050 | F004323 | MPLVGFRRREGRAAPVAASLSPVTRDYPSRALSDH |
| DRAFT_Contig_92214 | DRAFT_00415190 | F018180 | TAFDSALARCHGSCLLTLRLPFAHKPAVLFVTSPTFWKVDEACLLSNPSRRARSFCFAFQRFFNWPIPLRPPEPPAPCWRTVATVYPLGNCDSLRLETRLSYLTRLETVSQSSLAAQSLFAFTDGARTPPEELVNPASATRPCGRT |
| DRAFT_Contig_92818 | DRAFT_00066520 | F003269 | MVKTWRCSHSPVLTWFASRWRKHQSKRAEKPHSKFSGRKALDGPATRPKTPLAVENSVGKLAANH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |