2124908025: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1

Overview

Basic Information

• IMG/M Taxon OID: 2124908025
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046711 | Gp0052024 | Ga0026453
• Sample Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample from Bulk Soil Replicate 2: eDNA_1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10867947
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Miscanthus Rhizosphere → Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan State University, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → rhizosphere → bulk soil
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Kellogg Biological Station, Michigan State University
• Coordinates
  • Lat. (^o): 42.406189
  • Long. (^o): -85.40016
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003450	Metagenome	486	Y
F003605	Metagenome / Metatranscriptome	477	Y
F007342	Metagenome	353	Y
F007754	Metagenome / Metatranscriptome	345	Y
F009498	Metagenome / Metatranscriptome	317	Y
F041226	Metagenome	160	Y
F073673	Metagenome	120	Y
F083871	Metagenome	112	N
F093678	Metagenome	106	N
F101250	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
MBSR2a_Contig_101	All Organisms → cellular organisms → Bacteria → Acidobacteria	793
MBSR2a_Contig_186	Not Available	1039
MBSR2a_Contig_3237	Not Available	1181
MBSR2a_Contig_3497	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1400
MBSR2a_Contig_4342	Not Available	669
MBSR2a_Contig_5046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626
MBSR2a_Contig_60	All Organisms → cellular organisms → Bacteria → Acidobacteria	1075
MBSR2a_Contig_6149	All Organisms → cellular organisms → Bacteria	542
MBSR2a_Contig_7756	All Organisms → cellular organisms → Bacteria	565

Sequences

Scaffold ID	Protein ID	Family	Sequence
MBSR2a_Contig_101	MBSR2a_00001190	F073673	SSAVLSAALVLKPSTFAFGRNSLSNNPVNANSTHSYSREMFARCVGDIFRVRVGKQMVDLKLVALEDSQPTSHGITTGRIARTDCFSLRFHAVKRLPATNGFHSLKHSKLGNFDLFMIHSEEGAKHTAIINHLV
MBSR2a_Contig_186	MBSR2a_00023650	F003450	MELPNPISPRVQQPPIISWEEQLRDHNQKIEEYLQNRVFRGCTYESTVKSARTVLKRLFDLVPIPDPNHPDGHRHILVWEFLDPVRGSSRFGVLMSWLLQGNLAYGTRRRYLTELRAFCDYVVAKPNIPGSNLTIIEKYGPIALPFTKYDLPVHAQDRPTKPRYALSAEVRDEFY
MBSR2a_Contig_3237	MBSR2a_00036580	F041226	MTFDEEPDQQKRIAKLREQLEKLGGSTLTLESMPADMEEEFLRHVLEYETAEPISLFRLLENAGLE
MBSR2a_Contig_3497	MBSR2a_00101920	F003605	MANIGDDARLGGFPLVPGTGEEGKRKYGAREINRTRDFVAQVKKLIPTGRPAWRVAGGITSGTANPSGGSDGDIYFKVI
MBSR2a_Contig_4342	MBSR2a_00063740	F007754	AVFATPASAQVVLGGQTWTNTGTTLSLDAVVPGGNQPLNIQCVICGDNQPQQQADFGYTNFKNSGNLSDAIFFSTNVAGGANPGVDTVGIGYDGSFLRNYLIATGDTNLQFSIGIDVNDTGTPQTLEAFALLNLTQHTVLAQYSLLQPGGTLIPSANNGTGFPDYTLSGFNIQLGTDIQAGDQLIFYARISGANDGPDSFFLIPQQVPVPTIGAGLPALFAFG
MBSR2a_Contig_5046	MBSR2a_00093150	F009498	IEEKTMKNTVSISLDRESLARFARLLGNRPSATGVHCGDDDGDVDGVIGTVASGAHCGDDVDG
MBSR2a_Contig_60	MBSR2a_00125770	F093678	MATKARTIKIADLSSVIDQAVQASAGRTLPGGTLIGRQIAASLAAKINPNDLARDITKQVKAAVPDATLTPKVIKDGKIIICGFIIKPQSPIQ
MBSR2a_Contig_6149	MBSR2a_00013440	F007342	MFNNLIESTSHAKEFKRRGSFLLFTTATYVVLIVITGVVSIYAYDAHLDAQST
MBSR2a_Contig_6467	MBSR2a_00095050	F101250	MTLRASLLRELENPSLSVNSRAELCCEAAKKLEDKGEYEEACEVLSGYWQRIGEHPKVGDLEPRTSAEVLLRAGVLTGIIGGKNQVRDAQEKAK
MBSR2a_Contig_7756	MBSR2a_00161820	F083871	MGRAHRSRPNRLGEKLRLIRIHFGLTQMALIKRLAVKTEPLYPSSISLFEQGGREPSLLVLLAYSKLARISINDLVDDKVKPSDLSIKPRRFD