2124908010: Keratinized_gingiva_contig300

Overview

Basic Information

• IMG/M Taxon OID: 2124908010
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046820 | Gp0052284 | Ga0010961
• Sample Name: Keratinized_gingiva_contig300
• Sequencing Status: Permanent Draft
• Sequencing Center: Los Alamos National Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 87500670
• Sequencing Scaffolds: 29
• Novel Protein Genes: 32
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Keratinized Gingiva Microbial Communities From Saint Louis, Missouri, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Keratinized Gingiva → Keratinized Gingiva Microbial Communities From Saint Louis, Missouri, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: St. Louis, MO
• Coordinates
  • Lat. (^o): 38.646
  • Long. (^o): -90.224
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F054111	Metagenome	140	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F067847	Metagenome	125	N
F071327	Metagenome	122	N
F071329	Metagenome	122	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F090517	Metagenome	108	N
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
kg300_1588258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2434
kg300_2254205	All Organisms → cellular organisms → Bacteria	2236
kg300_3187820	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	658
kg300_3253587	All Organisms → Viruses → Predicted Viral	1660
kg300_3255450	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1026
kg300_3257737	All Organisms → Viruses → Predicted Viral	2878
kg300_3264045	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2217
kg300_3264576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer	9684
kg300_3268304	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	528
kg300_3269143	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3581
kg300_3270362	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43332
kg300_3272596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1452
kg300_3272993	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	800
kg300_3273323	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	800
kg300_3274471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	921
kg300_3276207	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	528
kg300_3280911	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1676
kg300_3280912	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1912
kg300_3281692	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	568
kg300_3287435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	27344
kg300_3290032	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1576
kg300_3291177	All Organisms → cellular organisms → Bacteria	1102
kg300_3295148	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1139
kg300_3306713	All Organisms → cellular organisms → Bacteria	2479
kg300_3306841	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9409
kg300_3311322	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2033
kg300_3311627	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	5818
kg300_52439	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	874
kg300_910816	Not Available	2248

Sequences

Scaffold ID	Protein ID	Family	Sequence
kg300_1588258	kg300_00364050	F103434	VVEVTLAVIKEGRTGRRFERGETFMIDKVLVQPSAGNALKATENRDIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR
kg300_2254205	kg300_01145080	F089056	SKRKEADNTMVLEKNHAFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
kg300_3187820	kg300_01067680	F101360	ASQEKKKALKELEEYMAPGDTSKPMIDGMQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVATAALDGFIKQTGEVPDGVEVVQGDPRISVRISTAQEEAIRDLISTGDISLLMIEGGDA
kg300_3253587	kg300_00902610	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEKIKEAELNSL
kg300_3255450	kg300_01329300	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
kg300_3257737	kg300_00702520	F027205	VASRLIVSADDILRAVKESEEFERKALVEAQKRDRAAGKKPREVLHPDHKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
kg300_3264045	kg300_01281010	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASRLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVAAVKEASTHIEIED
kg300_3264045	kg300_01281020	F018385	MMAEHVNRWDPYAEVPIETHRDPVKDDQLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNDLVFMPDSGRKIITQLFEKEVK
kg300_3264576	kg300_00272320	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALAAALLFEYAYPWRIIFG
kg300_3268304	kg300_01197320	F054111	MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTLKIKWDLDYGLFLETESLSTSDKDLFLNILHKVILSL
kg300_3269143	kg300_00524540	F047127	MKKTFAFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK
kg300_3269143	kg300_00524570	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEFNSFGGMALYSSQYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLKIIAKEFGKKGIYE
kg300_3270362	kg300_00323090	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDSEKKTS
kg300_3270362	kg300_00323300	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSVKTPQTN
kg300_3272596	kg300_01194380	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFIEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK
kg300_3272993	kg300_00024940	F081456	KGAHMFEEPPIYYVLISLIFLIVFFAISFATWLVWLTNVAFFVKLVITAIGALFAAMTVILYTISAE
kg300_3273323	kg300_00387400	F081456	KGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVALFVKLVITAIGALFAAMTVILYTISAE
kg300_3274471	kg300_00075130	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPQERTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPVADTTHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSPLVERVLGHVE
kg300_3276207	kg300_00355230	F054111	MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ
kg300_3280911	kg300_00734930	F018385	MAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN
kg300_3280912	kg300_00737670	F018385	LRGLHPWSLTDTSGTETTMAEYVNQWESYKELSIENDRDPVLDNPIIYGVNVKHFTLTVYSPEGRVNKYWNARILKDQVGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRMNSRLPSTLWNTKEVN
kg300_3281692	kg300_01332110	F090517	MNRRILSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSAYASKDPTASYYEQARYYYTVTDRIFTLKTQVDYELNPPIDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL
kg300_3287435	kg300_00532030	F103434	VVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
kg300_3290032	kg300_01201520	F059076	MTNKILLLGLLLKVASINAQAINETNAAGKTGQKVGINTTIPTRTLTIKNAAANDGKPLLRLVDAPIYSKNIGSAMDADLGGNTATATNYTDYRPLMVDKVGDVYRGLPINNMSVLTLTISNVKGDWISEFDTGINYNKYAVAIMSYSFILPPYGPGNAVMLRGSFNTPNVIHGNGKHSVTTTPAFVILKKTGENWGIHADYPNLGPHEFTTGSTDLGPEVNGTWVITLLVGKKDAVNFTELRFSQDGKTTGQGTKDNAYKVGLENFLKKLE
kg300_3291177	kg300_00849930	F061927	MKNSIFILSAMFIVGACSSDSAQKVTEKIKNTYSDSLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
kg300_3295148	kg300_00448820	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKENFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFPLDDKTLAMIIKELGEAVASFKKV
kg300_3306713	kg300_00518050	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGTKKISLEDITGGDDSETGVLKVKYFDDEGADKIFENNNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
kg300_3306841	kg300_00658340	F101360	MSKEDALRRAAVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQADAIQELIASGDIRMIEVGGD
kg300_3311322	kg300_00994190	F063777	LKVLNIKISALPPENNSFWMKLLFYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYILYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKMRVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE
kg300_3311627	kg300_01420160	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
kg300_52439	kg300_00663550	F036281	MITLIKVDEGPVDIHELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSYKEYFDYWTAREGRPAPFFYESRQYHVKSFMRVPGMPELLITAEREKDHWYTFRLSDGLKSKFTRHTITNEKGHQSYDWVLKNAQWELDTIRYF
kg300_910816	kg300_01111700	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNIKVVNGFFSGNSQATVIRNTKQNQNGEFVRPIFVDVQCTEYTGGDLGEISVTYTAEAINVYNTGSFTGSFQCMIVYPLGSANR