2044078009: Sample 10347

Overview

Basic Information

• IMG/M Taxon OID: 2044078009
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056604 | Gp0051617 | Ga0011100
• Sample Name: Sample 10347
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 27411856
• Sequencing Scaffolds: 4
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Oral Microbial Communities From J. Craig Venter Institute, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human Oral → Human Oral Microbial Communities From J. Craig Venter Institute, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal secretion

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F095632	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
mobDRAFT_NODE_24_len_16287_cov_25_426659	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	16321
mobDRAFT_NODE_3426_len_1315_cov_9_505703	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1349
mobDRAFT_NODE_4554_len_3105_cov_10_754589	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3139
mobDRAFT_NODE_731_len_4875_cov_15_924513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	4909

Sequences

Scaffold ID	Protein ID	Family	Sequence
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687750	F074985	VELTDGGWYKTPRIIKGKDFLAHIHDTYTSGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFTLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYFLDHIKAMHID
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687760	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDDQKSKFTRHTMTNEKGHQRYDWVLENVEWAADTIRYF
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687770	F027205	VASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687800	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYRENNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687810	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687820	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILFFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK
mobDRAFT_NODE_24_len_16287_cov_25_426659	mobDRAFT_687880	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELKNL
mobDRAFT_NODE_3426_len_1315_cov_9_505703	mobDRAFT_677420	F095632	MSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQTN
mobDRAFT_NODE_4554_len_3105_cov_10_754589	mobDRAFT_857850	F049707	VSEYTSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSMYGIERKGN
mobDRAFT_NODE_731_len_4875_cov_15_924513	mobDRAFT_116260	F077405	QGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK