2043231002: 10 m water depth

Overview

Basic Information

• IMG/M Taxon OID: 2043231002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045617 | Gp0051643 | Ga0011082
• Sample Name: 10 m water depth
• Sequencing Status: Permanent Draft
• Sequencing Center: Soedertoern University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 49057896
• Sequencing Scaffolds: 9
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → SAR92 clade → SAR92 bacterium BACL16 MAG-120619-bin48	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	3
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Landsort Deep, Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Sweden
• Coordinates
  • Lat. (^o): 58.58333333
  • Long. (^o): 18.23333333
  • Alt. (m): N/A
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F003495	Metagenome / Metatranscriptome	483	Y
F022076	Metagenome / Metatranscriptome	216	Y
F028308	Metagenome	192	N
F028500	Metagenome / Metatranscriptome	191	Y
F034341	Metagenome / Metatranscriptome	175	Y
F058172	Metagenome / Metatranscriptome	135	Y
F080513	Metagenome / Metatranscriptome	115	N
F083611	Metagenome / Metatranscriptome	112	Y
F105247	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Landsort10m_GCH9ZVC01BOC1K	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	516
Landsort10m_GCH9ZVC01BQMM8	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → SAR92 clade → SAR92 bacterium BACL16 MAG-120619-bin48	505
Landsort10m_GCH9ZVC01C1A81	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	557
Landsort10m_GCH9ZVC01DHGMN	Not Available	513
Landsort10m_GCH9ZVC01DII1C	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	530
Landsort10m_GCH9ZVC02H6MOV	Not Available	514
Landsort10m_GCH9ZVC02H6UFR	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	502
Landsort10m_GCH9ZVC02HZY1X	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	502
Landsort10m_GCH9ZVC02IHJXT	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	528

Sequences

Scaffold ID	Protein ID	Family	Sequence
Landsort10m_GCH9ZVC01BOC1K	10m_449410	F105247	MKFAVACLIASTSAISLADAPPYFNEPTWRETYPSAAGLVQTSACEKSGQAGVLCENNLFATGMNGDEDLGQNIIMKGDKFHYN
Landsort10m_GCH9ZVC01BQMM8	10m_224240	F080513	LWLYQLTDQDLLQLYALFTPNDIIREFKPRKSEKRKIYLQPNSKYRLDRPIQARKYLERIILAACPEEIGFEDWEKVYEQKIEYVRAEALSRLWKRIGKHESLWAEE
Landsort10m_GCH9ZVC01BXEZ0	10m_127620	F000155	MKFAVALIATVAANRYENMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP
Landsort10m_GCH9ZVC01C1A81	10m_837130	F034341	MELYSNENNFNIFYEKKRKELKNLQTLNEFVKPNPYFVYFMFKDTIHVDDYGSIKETLFKFPTLNKVSSIFQ
Landsort10m_GCH9ZVC01COLR6	10m_561160	F028308	MQTLNNSWSNYLNNYEWTHTATVRLHYKISELSVDKITTSLVKYKPINYLFYCLENDRYDINHIHLLLNATLTVDRDNIAKGLGKYSKSVSYFDEVKSNKAISWYCSKQLNQNIPMT
Landsort10m_GCH9ZVC01DHGMN	10m_1179750	F083611	MSGKKARARKKKSQRRRDAAAGEEFAGLPDHLVVEHVLRSEHFDDPADLARLPAVSRAMRDAVTGTGLTFEELGEDE
Landsort10m_GCH9ZVC01DII1C	10m_1419330	F022076	YIHTINNIYDKNLLIKQPVIIKPRREHDPYEMNEIKGTRMPDYSGISKDRDIYGELGWIPNFNVKCAKNNDARHVTNREYFDGPMNYHVTFNNSTMTNSEFFR
Landsort10m_GCH9ZVC02H6MOV	10m_829000	F028500	MMYEIRTKWTNLIVYRTTERANAVYWLEENNQEGVFKLVRVK
Landsort10m_GCH9ZVC02H6UFR	10m_1587050	F003495	MKENNEKKMKNEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT
Landsort10m_GCH9ZVC02HZY1X	10m_582530	F003495	MEEKYFWQDNEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT
Landsort10m_GCH9ZVC02IHJXT	10m_1056290	F058172	MGTEVRVGEDKPKYDFYENALFLDDPQEADLSRKARCLAPKIGTQPRFASNNL