NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2038011002

2038011002: Coalbed microbial communities from New Mexico, USA - 343



Overview

Basic Information
IMG/M Taxon OID2038011002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0045251 | Gp0051580 | Ga0011022
Sample NameCoalbed microbial communities from New Mexico, USA - 343
Sequencing StatusPermanent Draft
Sequencing CenterVirginia Polytechnic Institute and State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size319498438
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCoalbed Water Microbial Communities From New Mexico, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomecoal mineunderground water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationNew Mexico
CoordinatesLat. (o)36.728056Long. (o)-108.220833Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F002104Metagenome / Metatranscriptome593Y
F003796Metagenome / Metatranscriptome468Y
F005327Metagenome / Metatranscriptome404Y
F013318Metagenome / Metatranscriptome272Y
F019851Metagenome227N
F021450Metagenome219N
F022943Metagenome / Metatranscriptome212Y
F029737Metagenome187Y
F029741Metagenome / Metatranscriptome187Y
F036294Metagenome / Metatranscriptome170Y
F038220Metagenome / Metatranscriptome166Y
F045184Metagenome153Y
F046903Metagenome / Metatranscriptome150Y
F058831Metagenome134Y
F060097Metagenome133Y
F066627Metagenome126N
F070390Metagenome123Y
F073159Metagenome / Metatranscriptome120Y
F073732Metagenome / Metatranscriptome120Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Coalbed1143_GAIGPUK01A2CE1Not Available506Open in IMG/M
Coalbed1143_GAIGPUK01A5HSMAll Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium505Open in IMG/M
Coalbed1143_GAIGPUK01AL2EJNot Available501Open in IMG/M
Coalbed1143_GAIGPUK01AMYP7All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales503Open in IMG/M
Coalbed1143_GAIGPUK01B8S7YAll Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria513Open in IMG/M
Coalbed1143_GAIGPUK01BIK73Not Available506Open in IMG/M
Coalbed1143_GAIGPUK01BK30HAll Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium505Open in IMG/M
Coalbed1143_GAIGPUK01BLPU8All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium564Open in IMG/M
Coalbed1143_GAIGPUK01BZ0ILAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium511Open in IMG/M
Coalbed1143_GAIGPUK01BZN6FNot Available506Open in IMG/M
Coalbed1143_GAIGPUK01CAN06All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus537Open in IMG/M
Coalbed1143_GAIGPUK01CBJ9JAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium511Open in IMG/M
Coalbed1143_GAIGPUK01CJONLAll Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae539Open in IMG/M
Coalbed1143_GAIGPUK01CK4BNAll Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium533Open in IMG/M
Coalbed1143_GAIGPUK01CMJBDNot Available522Open in IMG/M
Coalbed1143_GAIGPUK01DH0TFAll Organisms → cellular organisms → Bacteria → PVC group518Open in IMG/M
Coalbed1143_GAIGPUK01E11D2Not Available514Open in IMG/M
Coalbed1143_GAIGPUK01EALUHAll Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium583Open in IMG/M
Coalbed1143_GAIGPUK01ECNIVNot Available556Open in IMG/M
Coalbed1143_GAIGPUK01EZ7ISAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Coalbed1143_GAIGPUK01A2CE1Coalbed5_14158300F073732KKLLVKNPPSGNKKIVYLSKNASSTINGDPTLNGATFTIALTPGGTQCVTLPALNWTTTNTGFKYKDPQLTNGPVKVALIKVSGSGNFLLKVVAKSAAITVAPGNPTASYGTSFEIGGGGDQYCASTGTAIPTKNDAVTFLVKNDTGTACTTSCASPSGAFLDAATAF
Coalbed1143_GAIGPUK01A5HSMCoalbed5_2528540F045184GPSLEVDMSSAIVCSNAPELAVRTLACAVIKQALSDALDPTTPAGVRRDAEQFLAGDAWFRRWSVAAGMSPVRLISRRHAA
Coalbed1143_GAIGPUK01AL2EJCoalbed5_716770F019851VKRPDQVCESCWRVSRASSVPVTEIACHHNKVLATWHADTDEWTYQHRVARKRPTQKQSEQLAKMFDQAGAATRRRDET
Coalbed1143_GAIGPUK01AMYP7Coalbed5_1905980F038220MDEVEVLRRQTQELKGSLFALECFMNSLSEALSADARPVVSAFYASETQAFRTAMRGSNAPKATVAQFERDVQRAMRLLGPPAGA
Coalbed1143_GAIGPUK01B8S7YCoalbed5_6638960F022943MHTLEGSHAPASGGPAVRYRVEYEVVGNVVNYRASFAAASGPSHHEGQFDFDPARVDPASAVESFMQNHIGKADWDVAP
Coalbed1143_GAIGPUK01BIK73Coalbed5_3691170F066627DATEKLRKINRKVANYHNLELAIVQVSDSYTRVLNSLKTISDHNCFKPSEYHMISESMMGLLSQTSYAITTLTVVLTDNFSEMSDGERLLNMNQAIKELRENLGVINSAIIEVEILDNQRMQLRTLNYINSVFK
Coalbed1143_GAIGPUK01BK30HCoalbed5_715570F000982MATLRKPTSRALRLLDHHRLRGRSYPTLRYWERLHQMLAEEAEKRGKTPPPAPLVHGDLEAAPTAEDRMERLNQQVAWADQNQLLHRVQMFFDAMPSSGWEQYDKNRR
Coalbed1143_GAIGPUK01BLPU8Coalbed5_6124000F036294LQIGASSDPTGVKPVADEDAATYPRVKLPESDREVGAEGRNM
Coalbed1143_GAIGPUK01BZ0ILCoalbed5_6470240F070390MKTAFFPAKTLSHLPSDNMEALAVLCGEFERFDGHARQLPEQHDDYVEALGILKAFAMARDAKLEAFPEIGPQRHQNIANITAFFSQ
Coalbed1143_GAIGPUK01BZN6FCoalbed5_4597380F013318GVCGEGASGTNFLLTTLTNVVPVYETNVVTVPVTNLVAKPGAEATIAATGSIVNTFAPGIGSILALALGGLYHGYRQIRNRKVNEALIQGVETARAVLTTTPQGQAADAQFVKWLMEHQREAGVFTTVSDLVATLSDNPAARLTAQEIAERVQKVTQQQRTPSQAAVA
Coalbed1143_GAIGPUK01CAN06Coalbed5_12619880F046903EAEAAKGEITKLLELNRNYFTARGPKAAEEGKALETALDAFQRDRLPLLDDLRAQVEDAAAARSDAAFSAQLRKLTVELRSKDLSASKLEDVLEQYKLAVLP
Coalbed1143_GAIGPUK01CBJ9JCoalbed5_9559330F003796QRQGLLRQLADLRELRRGSLTEQFLTVRHADGSSVKRGPYPLLTRKQASKTVSVRLTDPALVPLYRQQIQAMRQFEGVVDQLVRLGEQLGDLAVAQAGKKKTPGGTGAKRRGAPSGHGHGQQTDA
Coalbed1143_GAIGPUK01CJONLCoalbed5_3288180F021450LLLLFSIEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIVAFIMAG
Coalbed1143_GAIGPUK01CK4BNCoalbed5_10234500F073159MARRRKNAVRQGQGTMCNICGVNCGRGGPLKKHLKGAHDIDYDDYKKCFYDFDGKVKTILADKWDDSVSTSAGKTVITHVLVRRFIGDPGPRGVRRSG
Coalbed1143_GAIGPUK01CMJBDCoalbed5_3715940F005327IAETKGASDSFVITAIRPILFQVCSGDDLAELLQTLITLFGRKGKGTGSFIALLKCSSGRFGSCLEAIKGEAMIELAASQRGLRVVKIAPQSLKKTLGSAKDQKWQHRAGELFNPDGKRPNWSKGAAGAVAAAFKAAGA
Coalbed1143_GAIGPUK01DH0TFCoalbed5_372310F058831MSLLNKRQVKAYTLAQAEQHRAHKFTRVGSDFYVKCEAHLRAFIRGYLHRLPSKGKTIL
Coalbed1143_GAIGPUK01E11D2Coalbed5_14070740F029741MPVLAYLGVVGFVLVALLFVADATLERNSPVIVTSDRIGLPEKWHSDTIQTLTTELAHAPDMTSPAVLAAQPKAEPKVLETIEPLARAARAEAPPERNRVTPPMDYRQNRVVDRFSIGGL
Coalbed1143_GAIGPUK01EALUHCoalbed5_4505750F029737YQKSFEKLNYLFVRDMHKYIRKSTVYDSTFFKTILNYSVNITLTASWIKLLKNFNSDKYNNILRFSADFNCSNGEPE
Coalbed1143_GAIGPUK01ECNIVCoalbed5_11283660F060097MTEVIRVDLEKRDPGKSIALLDEKSDQRGGHSPILVEPGGIVQLRYQGRRVGARITKAAANEFVGQILSFENGKPKLEDLTQNDFIAFQEENIFGYDPPAKI
Coalbed1143_GAIGPUK01EZ7ISCoalbed5_2381220F002104MKQHRSGSELTPQEIRLIEQLRQHPEMLARMQSILDLAHATSGPLKTADEVEELLIQELRQLGSTTLHQWATQAEARVGADLQAQDATVRSRKKKR

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