| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2038011002 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045251 | Gp0051580 | Ga0011022 |
| Sample Name | Coalbed microbial communities from New Mexico, USA - 343 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Virginia Polytechnic Institute and State University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 319498438 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 20 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coalbed Water Microbial Communities From New Mexico, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Coalbed Water → Coalbed Water → Coalbed Water Microbial Communities From New Mexico, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → coal mine → underground water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | New Mexico | |||||||
| Coordinates | Lat. (o) | 36.728056 | Long. (o) | -108.220833 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000982 | Metagenome / Metatranscriptome | 814 | Y |
| F002104 | Metagenome / Metatranscriptome | 593 | Y |
| F003796 | Metagenome / Metatranscriptome | 468 | Y |
| F005327 | Metagenome / Metatranscriptome | 404 | Y |
| F013318 | Metagenome / Metatranscriptome | 272 | Y |
| F019851 | Metagenome | 227 | N |
| F021450 | Metagenome | 219 | N |
| F022943 | Metagenome / Metatranscriptome | 212 | Y |
| F029737 | Metagenome | 187 | Y |
| F029741 | Metagenome / Metatranscriptome | 187 | Y |
| F036294 | Metagenome / Metatranscriptome | 170 | Y |
| F038220 | Metagenome / Metatranscriptome | 166 | Y |
| F045184 | Metagenome | 153 | Y |
| F046903 | Metagenome / Metatranscriptome | 150 | Y |
| F058831 | Metagenome | 134 | Y |
| F060097 | Metagenome | 133 | Y |
| F066627 | Metagenome | 126 | N |
| F070390 | Metagenome | 123 | Y |
| F073159 | Metagenome / Metatranscriptome | 120 | Y |
| F073732 | Metagenome / Metatranscriptome | 120 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Coalbed1143_GAIGPUK01A2CE1 | Not Available | 506 | Open in IMG/M |
| Coalbed1143_GAIGPUK01A5HSM | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 505 | Open in IMG/M |
| Coalbed1143_GAIGPUK01AL2EJ | Not Available | 501 | Open in IMG/M |
| Coalbed1143_GAIGPUK01AMYP7 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 503 | Open in IMG/M |
| Coalbed1143_GAIGPUK01B8S7Y | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 513 | Open in IMG/M |
| Coalbed1143_GAIGPUK01BIK73 | Not Available | 506 | Open in IMG/M |
| Coalbed1143_GAIGPUK01BK30H | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium | 505 | Open in IMG/M |
| Coalbed1143_GAIGPUK01BLPU8 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 564 | Open in IMG/M |
| Coalbed1143_GAIGPUK01BZ0IL | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 511 | Open in IMG/M |
| Coalbed1143_GAIGPUK01BZN6F | Not Available | 506 | Open in IMG/M |
| Coalbed1143_GAIGPUK01CAN06 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus | 537 | Open in IMG/M |
| Coalbed1143_GAIGPUK01CBJ9J | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 511 | Open in IMG/M |
| Coalbed1143_GAIGPUK01CJONL | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 539 | Open in IMG/M |
| Coalbed1143_GAIGPUK01CK4BN | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 533 | Open in IMG/M |
| Coalbed1143_GAIGPUK01CMJBD | Not Available | 522 | Open in IMG/M |
| Coalbed1143_GAIGPUK01DH0TF | All Organisms → cellular organisms → Bacteria → PVC group | 518 | Open in IMG/M |
| Coalbed1143_GAIGPUK01E11D2 | Not Available | 514 | Open in IMG/M |
| Coalbed1143_GAIGPUK01EALUH | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 583 | Open in IMG/M |
| Coalbed1143_GAIGPUK01ECNIV | Not Available | 556 | Open in IMG/M |
| Coalbed1143_GAIGPUK01EZ7IS | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus | 536 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Coalbed1143_GAIGPUK01A2CE1 | Coalbed5_14158300 | F073732 | KKLLVKNPPSGNKKIVYLSKNASSTINGDPTLNGATFTIALTPGGTQCVTLPALNWTTTNTGFKYKDPQLTNGPVKVALIKVSGSGNFLLKVVAKSAAITVAPGNPTASYGTSFEIGGGGDQYCASTGTAIPTKNDAVTFLVKNDTGTACTTSCASPSGAFLDAATAF |
| Coalbed1143_GAIGPUK01A5HSM | Coalbed5_2528540 | F045184 | GPSLEVDMSSAIVCSNAPELAVRTLACAVIKQALSDALDPTTPAGVRRDAEQFLAGDAWFRRWSVAAGMSPVRLISRRHAA |
| Coalbed1143_GAIGPUK01AL2EJ | Coalbed5_716770 | F019851 | VKRPDQVCESCWRVSRASSVPVTEIACHHNKVLATWHADTDEWTYQHRVARKRPTQKQSEQLAKMFDQAGAATRRRDET |
| Coalbed1143_GAIGPUK01AMYP7 | Coalbed5_1905980 | F038220 | MDEVEVLRRQTQELKGSLFALECFMNSLSEALSADARPVVSAFYASETQAFRTAMRGSNAPKATVAQFERDVQRAMRLLGPPAGA |
| Coalbed1143_GAIGPUK01B8S7Y | Coalbed5_6638960 | F022943 | MHTLEGSHAPASGGPAVRYRVEYEVVGNVVNYRASFAAASGPSHHEGQFDFDPARVDPASAVESFMQNHIGKADWDVAP |
| Coalbed1143_GAIGPUK01BIK73 | Coalbed5_3691170 | F066627 | DATEKLRKINRKVANYHNLELAIVQVSDSYTRVLNSLKTISDHNCFKPSEYHMISESMMGLLSQTSYAITTLTVVLTDNFSEMSDGERLLNMNQAIKELRENLGVINSAIIEVEILDNQRMQLRTLNYINSVFK |
| Coalbed1143_GAIGPUK01BK30H | Coalbed5_715570 | F000982 | MATLRKPTSRALRLLDHHRLRGRSYPTLRYWERLHQMLAEEAEKRGKTPPPAPLVHGDLEAAPTAEDRMERLNQQVAWADQNQLLHRVQMFFDAMPSSGWEQYDKNRR |
| Coalbed1143_GAIGPUK01BLPU8 | Coalbed5_6124000 | F036294 | LQIGASSDPTGVKPVADEDAATYPRVKLPESDREVGAEGRNM |
| Coalbed1143_GAIGPUK01BZ0IL | Coalbed5_6470240 | F070390 | MKTAFFPAKTLSHLPSDNMEALAVLCGEFERFDGHARQLPEQHDDYVEALGILKAFAMARDAKLEAFPEIGPQRHQNIANITAFFSQ |
| Coalbed1143_GAIGPUK01BZN6F | Coalbed5_4597380 | F013318 | GVCGEGASGTNFLLTTLTNVVPVYETNVVTVPVTNLVAKPGAEATIAATGSIVNTFAPGIGSILALALGGLYHGYRQIRNRKVNEALIQGVETARAVLTTTPQGQAADAQFVKWLMEHQREAGVFTTVSDLVATLSDNPAARLTAQEIAERVQKVTQQQRTPSQAAVA |
| Coalbed1143_GAIGPUK01CAN06 | Coalbed5_12619880 | F046903 | EAEAAKGEITKLLELNRNYFTARGPKAAEEGKALETALDAFQRDRLPLLDDLRAQVEDAAAARSDAAFSAQLRKLTVELRSKDLSASKLEDVLEQYKLAVLP |
| Coalbed1143_GAIGPUK01CBJ9J | Coalbed5_9559330 | F003796 | QRQGLLRQLADLRELRRGSLTEQFLTVRHADGSSVKRGPYPLLTRKQASKTVSVRLTDPALVPLYRQQIQAMRQFEGVVDQLVRLGEQLGDLAVAQAGKKKTPGGTGAKRRGAPSGHGHGQQTDA |
| Coalbed1143_GAIGPUK01CJONL | Coalbed5_3288180 | F021450 | LLLLFSIEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIVGALANIGKVLGDSRDYRGFITSIVLYLAVYFCLVGIVAFIMAG |
| Coalbed1143_GAIGPUK01CK4BN | Coalbed5_10234500 | F073159 | MARRRKNAVRQGQGTMCNICGVNCGRGGPLKKHLKGAHDIDYDDYKKCFYDFDGKVKTILADKWDDSVSTSAGKTVITHVLVRRFIGDPGPRGVRRSG |
| Coalbed1143_GAIGPUK01CMJBD | Coalbed5_3715940 | F005327 | IAETKGASDSFVITAIRPILFQVCSGDDLAELLQTLITLFGRKGKGTGSFIALLKCSSGRFGSCLEAIKGEAMIELAASQRGLRVVKIAPQSLKKTLGSAKDQKWQHRAGELFNPDGKRPNWSKGAAGAVAAAFKAAGA |
| Coalbed1143_GAIGPUK01DH0TF | Coalbed5_372310 | F058831 | MSLLNKRQVKAYTLAQAEQHRAHKFTRVGSDFYVKCEAHLRAFIRGYLHRLPSKGKTIL |
| Coalbed1143_GAIGPUK01E11D2 | Coalbed5_14070740 | F029741 | MPVLAYLGVVGFVLVALLFVADATLERNSPVIVTSDRIGLPEKWHSDTIQTLTTELAHAPDMTSPAVLAAQPKAEPKVLETIEPLARAARAEAPPERNRVTPPMDYRQNRVVDRFSIGGL |
| Coalbed1143_GAIGPUK01EALUH | Coalbed5_4505750 | F029737 | YQKSFEKLNYLFVRDMHKYIRKSTVYDSTFFKTILNYSVNITLTASWIKLLKNFNSDKYNNILRFSADFNCSNGEPE |
| Coalbed1143_GAIGPUK01ECNIV | Coalbed5_11283660 | F060097 | MTEVIRVDLEKRDPGKSIALLDEKSDQRGGHSPILVEPGGIVQLRYQGRRVGARITKAAANEFVGQILSFENGKPKLEDLTQNDFIAFQEENIFGYDPPAKI |
| Coalbed1143_GAIGPUK01EZ7IS | Coalbed5_2381220 | F002104 | MKQHRSGSELTPQEIRLIEQLRQHPEMLARMQSILDLAHATSGPLKTADEVEELLIQELRQLGSTTLHQWATQAEARVGADLQAQDATVRSRKKKR |
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